BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02040.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333453 jgi|Araly1|333453|fgenesh1_pg.C_scaffold_1000018 1260 0.0
> Ahg333453 jgi|Araly1|333453|fgenesh1_pg.C_scaffold_1000018
Length=795
Score = 1260 bits (682), Expect = 0.0
Identities = 768/807 (95%), Gaps = 15/807 (2%)
Strand=Plus/Plus
Query 172 ATGCATGGAGCCATGAACTCACCATGCATTGATTTCGTAATGTTCAGTCGTGGACAACAC 231
|||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGCATGGAGTCATGAACTCGTCATGCATTGATTTCGTAATGTTCAGTCGCGGACAACAC 60
Query 232 GATGAGGACAACATGTCACGTCGTCCTCCGTGGAAGAGGGAGAGATCGATGTCCACTCAG 291
||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 61 GATGAGGACAACATGTCACGTCG---TCCATGGAAGAGGGAGAGATCGATGCCCACTCAG 117
Query 292 ---CATCATCATCTTAACTTGTCTCCAAACGAAGACGAAGAGCTTGCCAACTGTCTTGTC 348
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 118 CATCATCATCATCTTAACTTGTCTCCAAACGAAGATGAGGAGCTCGCCAACTGTCTTGTG 177
Query 349 TTGTTGTCCAATTCAGGGGATGCGCATGGTGGTGATCAGCATAAACAACATGGACATGGT 408
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 178 TTGTTGTCCAATTCAGGGGATGCGCA---TGGTGATCATCATAAACAACATGGACATGGT 234
Query 409 AAGGGCAAAACCGTCaaaaagcaaaaaaCCGCCCAGGTTTTCCAATGCAAAGCTTGCAAG 468
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 235 AAGGGCAAAACCGTCAAAAAGCAAAAAACCGCTCAGGTTTTCCAATGCAAAGCTTGCAAG 294
Query 469 AAGGTGTTCACGTCGCATCAGGCATTGGGTGGACACAGGGCAAGCCACAAGAAAGTGAAG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAGGTGTTCACGTCGCATCAGGCATTGGGTGGACACAGGGCAAGCCACAAGAAAGTGAAG 354
Query 529 GGTTGTTTTGCCTCTCAAGATAaagaagaggaagaggaagaggaatacaaagaagacgac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGTTGTTTTGCCTCTCAAGATAAAGAAGAGGAAGAGGAAGAGGAATACAAAGAAGACGAC 414
Query 589 gacgacaacgacgaggacgaagaTGAGGAGGAGGATGAGGAAGACAAATCAACGGCTCAT 648
||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 415 GACGAG---GACGAGGACGAAGATGAGGAGGAGGA--AG-AAGACAAATCAACGGCTCAC 468
Query 649 ATCGCAAGAAAGAGATCCAACGCTCACGAATGCACCATCTGCCATCGCGTCTTCTCTTCG 708
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 469 ATCGCAAGAAAGAGATCCAACGCTCACGAGTGCACCATCTGCCATCGCGTCTTCTCTTCG 528
Query 709 GGACAGGCCTTAGGAGGCCACAAGCGATGCCATTGGCTAACACCTTCCAATTATCTTCGT 768
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 529 GGACAGGCCTTGGGAGGCCACAAGAGATGCCATTGGCTAACACCTTCCAATTATCTTCGT 588
Query 769 ATGACGTCGCTCCACGATCATCATCATTCCGTCGGCAGACCGCAGCCGTTAGATCAACCA 828
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 589 ATGACGTCGCTCCACGATCATCACCATTCCGTCGGTAGACCGCAGCCGTTAGATCAACCA 648
Query 829 TCTCTCGATCTCAACTTAGCTTGCCAAGAATATTCCGTCGATCCAACGGCCATGAGCGTA 888
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 649 TCTCTCGATCTCAACTTAGCTTGCCAAGAGTATTCCGTTGATCCAACGGCCATGAGCGTA 708
Query 889 GGGATGATCGAGAGAGATGGTGGTGGCAATAATCACAACGCTACTTCATCTTCGTGGTTA 948
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 709 GGGATGATCGAGAGAGATGGTGGTGGCAATAGTCACAACGCCACTTCATCTTCATGGTTA 768
Query 949 AAACTCGCAAGTGGTGATTGGTCTTGA 975
|||||||||||||||||||||||||||
Sbjct 769 AAACTCGCAAGTGGTGATTGGTCTTGA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5