BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02040.1 Length=975 Score E Sequences producing significant alignments: (Bits) Value Ahg333453 jgi|Araly1|333453|fgenesh1_pg.C_scaffold_1000018 1260 0.0 > Ahg333453 jgi|Araly1|333453|fgenesh1_pg.C_scaffold_1000018 Length=795 Score = 1260 bits (682), Expect = 0.0 Identities = 768/807 (95%), Gaps = 15/807 (2%) Strand=Plus/Plus Query 172 ATGCATGGAGCCATGAACTCACCATGCATTGATTTCGTAATGTTCAGTCGTGGACAACAC 231 |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGCATGGAGTCATGAACTCGTCATGCATTGATTTCGTAATGTTCAGTCGCGGACAACAC 60 Query 232 GATGAGGACAACATGTCACGTCGTCCTCCGTGGAAGAGGGAGAGATCGATGTCCACTCAG 291 ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| Sbjct 61 GATGAGGACAACATGTCACGTCG---TCCATGGAAGAGGGAGAGATCGATGCCCACTCAG 117 Query 292 ---CATCATCATCTTAACTTGTCTCCAAACGAAGACGAAGAGCTTGCCAACTGTCTTGTC 348 |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 118 CATCATCATCATCTTAACTTGTCTCCAAACGAAGATGAGGAGCTCGCCAACTGTCTTGTG 177 Query 349 TTGTTGTCCAATTCAGGGGATGCGCATGGTGGTGATCAGCATAAACAACATGGACATGGT 408 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 178 TTGTTGTCCAATTCAGGGGATGCGCA---TGGTGATCATCATAAACAACATGGACATGGT 234 Query 409 AAGGGCAAAACCGTCaaaaagcaaaaaaCCGCCCAGGTTTTCCAATGCAAAGCTTGCAAG 468 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 235 AAGGGCAAAACCGTCAAAAAGCAAAAAACCGCTCAGGTTTTCCAATGCAAAGCTTGCAAG 294 Query 469 AAGGTGTTCACGTCGCATCAGGCATTGGGTGGACACAGGGCAAGCCACAAGAAAGTGAAG 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 AAGGTGTTCACGTCGCATCAGGCATTGGGTGGACACAGGGCAAGCCACAAGAAAGTGAAG 354 Query 529 GGTTGTTTTGCCTCTCAAGATAaagaagaggaagaggaagaggaatacaaagaagacgac 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 GGTTGTTTTGCCTCTCAAGATAAAGAAGAGGAAGAGGAAGAGGAATACAAAGAAGACGAC 414 Query 589 gacgacaacgacgaggacgaagaTGAGGAGGAGGATGAGGAAGACAAATCAACGGCTCAT 648 ||||| |||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 415 GACGAG---GACGAGGACGAAGATGAGGAGGAGGA--AG-AAGACAAATCAACGGCTCAC 468 Query 649 ATCGCAAGAAAGAGATCCAACGCTCACGAATGCACCATCTGCCATCGCGTCTTCTCTTCG 708 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 469 ATCGCAAGAAAGAGATCCAACGCTCACGAGTGCACCATCTGCCATCGCGTCTTCTCTTCG 528 Query 709 GGACAGGCCTTAGGAGGCCACAAGCGATGCCATTGGCTAACACCTTCCAATTATCTTCGT 768 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 529 GGACAGGCCTTGGGAGGCCACAAGAGATGCCATTGGCTAACACCTTCCAATTATCTTCGT 588 Query 769 ATGACGTCGCTCCACGATCATCATCATTCCGTCGGCAGACCGCAGCCGTTAGATCAACCA 828 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 589 ATGACGTCGCTCCACGATCATCACCATTCCGTCGGTAGACCGCAGCCGTTAGATCAACCA 648 Query 829 TCTCTCGATCTCAACTTAGCTTGCCAAGAATATTCCGTCGATCCAACGGCCATGAGCGTA 888 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 649 TCTCTCGATCTCAACTTAGCTTGCCAAGAGTATTCCGTTGATCCAACGGCCATGAGCGTA 708 Query 889 GGGATGATCGAGAGAGATGGTGGTGGCAATAATCACAACGCTACTTCATCTTCGTGGTTA 948 ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| Sbjct 709 GGGATGATCGAGAGAGATGGTGGTGGCAATAGTCACAACGCCACTTCATCTTCATGGTTA 768 Query 949 AAACTCGCAAGTGGTGATTGGTCTTGA 975 ||||||||||||||||||||||||||| Sbjct 769 AAACTCGCAAGTGGTGATTGGTCTTGA 795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36216771150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5