BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02050.1
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470071 jgi|Araly1|470071|fgenesh2_kg.1__25__AT1G02050.1 2198 0.0
Ahg490563 jgi|Araly1|490563|fgenesh2_kg.6__3697__AT4G00040.1 863 0.0
> Ahg470071 jgi|Araly1|470071|fgenesh2_kg.1__25__AT1G02050.1
Length=1291
Score = 2198 bits (1190), Expect = 0.0
Identities = 1259/1292 (97%), Gaps = 5/1292 (0%)
Strand=Plus/Plus
Query 3 TTTGCTGATATTCTGCATCCACCATCTTTCTTCCCAATATCTAATTGAGTTTTTTCCTTC 62
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TTTGCTAATATTCTGCATCCACCATCTTTCTTCCCAATATCTTATTGAGTTTTTTCCTTC 60
Query 63 TGCGCTTGAAAAGAA-ATGTCGAATTCTAGGATGAATGGTGTTGAGAAGCTAAGCAGCAA 121
|||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TGCGCTTGAAAA-AAGATGTCGAATTCTAGAATGAATGGTGTTGAGAAGCTAAGCAGCAT 119
Query 122 ATCCACAAGGCGTGTCGCAAATGCCGGAAAGGCAACACTGCTTGCTCTTGGCAAAGCCTT 181
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 120 ATCCACAAGGCGTGTCGCAAATCCCAGAAAGGCAACACTGCTTGCTCTTGGCAAAGCCTT 179
Query 182 CCCAAGCCAAGTCGTTCCTCAGGAGAATCTAGTGGAAGGATTTCTACGAGACACCAAATG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCCAAGCCAAGTCGTTCCTCAGGAGAATCTAGTGGAAGGATTTCTACGAGACACCAAATG 239
Query 242 TGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGTGCAAAACGACAACCGTGAAGAC 301
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 240 TGATGACGCGTTTATCAAAGAAAAGTTGGAACACTTGTGCAAAACCACAACCGTGAAGAC 299
Query 302 GCGATACACTGTGTTGACGCGAGAGATACTGGCTAAATACCCTGAGCTAACAACAGAGGG 361
||| ||||| || ||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 GCGCTACACGGTATTGTCACGAGAGATACTGGATAAATACCCTGAGCTAACAACAGAGGG 359
Query 362 TTCACCAACAATCAAGCAAAGACTTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCATT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCACCAACAATCAAGCAAAGACTTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCATT 419
Query 422 GGAAGCCAGTTTAGGTTGCATCAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCACAT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAAGCCAGTTTAGGTTGCATCAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCACAT 479
Query 482 TGTCTACGTTTCCTCAAGCGAGATCCGTTTACCCGGTGGTGACCTTTACCTCTCAGCAAA 541
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TGTCTACGTTTCCTCAAGCGAGATCCGATTACCCGGTGGTGACCTTTACCTCTCAGCAAA 539
Query 542 GCTAGGCCTGAGGAATGACGTGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTAGGCCTGAGGAATGACGTGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGG 599
Query 602 TGTGACTGGCCTCCGTGTGGCCAAAGACATTGCTGAGAACAACCCCGGAAGCCGTGTTCT 661
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TGTGACTGGCCTCCGTGTGGCCAAAGACATTGCTGAGAACAACCCGGGAAGCCGTGTTCT 659
Query 662 GCTCACAACCTCTGAAACCACCATTCTCGGATTTCGGCCACCAAACAAAGCGCGTCCGTA 721
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 660 GCTCACAACCTCTGAAACCACCATTCTCGGGTTTCGCCCACCAAACAAAGCTCGTCCGTA 719
Query 722 CGACCTAGTTGGAGCTGCTCTGTTTGGAGATGGTGCAGCTGCTGTGATCATCGGAGCTGA 781
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 CGACCTAGTTGGAGCTGCTCTGTTTGGAGATGGTGCAGCTGCTGTAATCATCGGAGCTGA 779
Query 782 CCCGAGAGAGTGTGAAGCTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCC 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCCGAGAGAGTGTGAAGCTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCC 839
Query 842 GGGGACACAGAACGTGATCGAGGGGAGGTTGACTGAGGAAGGCATAAACTTCAAGCTTGG 901
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GGGGACACAGAACGTGATCGACGGGAGGTTGACGGAGGAAGGCATAAACTTCAAGCTTGG 899
Query 902 ACGAGACCTCCCGCAGAAGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGATGGG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACGAGACCTCCCGCAGAAGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGATGGG 959
Query 962 AAAGGCTGG---CGATGAGTCGATGGAGTTCAATGACATGTTCTGGGCTGTTCATCCAGG 1018
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 AAAGGCTGGTGGCGATGAGTCGATGGAGTTCAATGACATGTTCTGGGCAGTTCATCCAGG 1019
Query 1019 AGGACCTGCGATTCTGAACCGTCTGGAGACAAAACTGAAGCTGGAGAAAGAGAAGCTGGA 1078
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 AGGACCTGCGATTCTGAACCGTCTGGAGACAAAACTAAAGCTGGAGAAAGAGAAGCTGGA 1079
Query 1079 GAGCAGCAGAAGGGCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTGTATGT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAGCAGCAGAAGGGCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTGTATGT 1139
Query 1139 GATGGAGTATATGAGAGATGAGCTGAAGAAGAAAGGTGACGCAGCACAAGAGTGGGGACT 1198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GATGGAGTATATGAGAGAGGAGCTGAAGAAGAAAGGTGACGCAGCACAAGAGTGGGGACT 1199
Query 1199 TGGCTTAGCTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCATCCGCAGCCTCACCTC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGGCTTAGCTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCATCCGCAGCCTCACCTC 1259
Query 1259 TTCCTAATTGTTATAATTTACATTTGGGTTAT 1290
| ||||||||| ||||||||||||||||||||
Sbjct 1260 TCCCTAATTGTCATAATTTACATTTGGGTTAT 1291
> Ahg490563 jgi|Araly1|490563|fgenesh2_kg.6__3697__AT4G00040.1
Length=1347
Score = 863 bits (467), Expect = 0.0
Identities = 914/1127 (81%), Gaps = 41/1127 (4%)
Strand=Plus/Plus
Query 147 GGAAAGGCAACACTGCTTGCTCTTGGCAAAGCCTTCCCAAGCCAA-GTCG-TTCCTCAGG 204
||||| ||||||||||||||||| || || |||||||| || ||| || | |||| ||||
Sbjct 70 GGAAA-GCAACACTGCTTGCTCTCGGTAAGGCCTTCCCCAG-CAATGTTGTTTCC-CAGG 126
Query 205 AGAATCTAGTGGAAGGATT-TCTACGAGACACCAAATGTGATGACGCGTT-TATCAAAGA 262
||||||| |||| |||||| ||| || || | ||||||||||||| | || |||||||||
Sbjct 127 AGAATCTCGTGG-AGGATTATCTCCGTGAAATCAAATGTGATGAC-CTTTCTATCAAAGA 184
Query 263 AAAGCTGGAACACTTGTGCAAAACG-ACAACCGTGAAGACGCGATACACTGTGTTGACGC 321
|||||| |||||||||| |||| | ||||| || ||||| || ||||| || || | |
Sbjct 185 CAAGCTGCAACACTTGTGTAAAA-GCACAACTGTCAAGACACGCTACACAGTCATGTCTC 243
Query 322 GAGAGATACTGGC-TAAATACCCTGAGCTAACAA-CAGAGGGTTCACCAACAATCAAGCA 379
| |||| || || ||||||||||| ||| ||| | |||||||| ||||| ||||| ||
Sbjct 244 GTGAGACGCT-GCAAAAATACCCTGAACTAGCAATC-GAGGGTTCCCCAACCATCAAACA 301
Query 380 AAGACTTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCAT-TGGAAGCCAGTTTAGG-T 437
|| ||||| ||||||||||| ||||||||| | ||||||| | ||||| || || || |
Sbjct 302 GAGGCTTGAGATTGCAAACGAAGCGGTTGTGCAGATGGCATAT-GAAGCGAGCTT-GGTT 359
Query 438 TGCATCAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCA-CATTGTCTACGTTTCCTC 496
||||||||||||||||||||| |||||||||| |||||||| | | ||||| ||||||||
Sbjct 360 TGCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATC-TAGTCTATGTTTCCTC 418
Query 497 AAGCGAGATCCGTTTACCCGGTGGTGACCTTTACCTCTCAG-CAAAGCTAGGCCTGAGGA 555
|| ||| ||||||| ||||| |||||||| |||||||| | || |||| ||||| || |
Sbjct 419 CAGTGAGTTCCGTTTGCCCGGAGGTGACCTCTACCTCTC-GACACAGCTGGGCCTTAGCA 477
Query 556 ATGACGTGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGGTGTGA-CTGGCCTC 614
| || || | ||||||||||||||||||||||||||||| |||||| ||| | ||| |
Sbjct 478 ACGAGGTTCAGAGAGTGATGCTGTATTTTCTGGGATGCTATGGAGGTTTGAGCGGGC-TG 536
Query 615 CGTGTGGCCAAAGACATTGCTGAGAACAACCCCGGAAGCCGTGTTCTGCTCACAACCTCT 674
|| ||||| ||||||||||| ||||||||||| || ||||| || |||||||| |||||
Sbjct 537 CGCGTGGCTAAAGACATTGCCGAGAACAACCCAGGGAGCCGGGTGCTGCTCACCACCTCC 596
Query 675 GAAACCACCATTCTCGGATTTCGGCCACCAAACAAAGCGCGTCCGTACGACCTAGTTGGA 734
|| || || |||| || || || || || |||||||| || || |||||| |||| ||
Sbjct 597 GAGACTACGGTTCTGGGGTTCCGCCCGCCCAACAAAGCTCGCCCTTACGACTTAGTCGGG 656
Query 735 GCTGCTCTGTTTGGAGATGGTGCAGCTGCTGTGATCATCGGAGCTGACCCGAGAGAGTGT 794
||||| ||||||||||| || ||||||||| | ||||||||||||||||| ||||||| |
Sbjct 657 GCTGCACTGTTTGGAGACGGAGCAGCTGCTCTAATCATCGGAGCTGACCCTAGAGAGTCT 716
Query 795 GAAGCTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTC-TTGCCGGGGACACAGAA 853
||| |||| ||||||||||| |||| ||| | ||||||||| || || ||||||
Sbjct 717 GAATCTCCCTTCATGGAGCTTCACTGTGCTCTGCAGCAGTTCCTTCCCCAA-ACACAGGG 775
Query 854 CGTGATCGAGGGGAGGTTGACTGAGGAAGGCATAAACTTCAAGCTTGGACGAGACCTCCC 913
|||||||| |||||| || | || || || |||| ||||||||| ||| ||||||||||
Sbjct 776 GGTGATCGACGGGAGGCTGTCAGAAGAGGGAATAAGCTTCAAGCTAGGAAGAGACCTCCC 835
Query 914 GCAGAAGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGATGGGAAAGGCTGGCGA 973
|||||||| || || ||| | || |||||||||||||||||| ||| ||||||||||
Sbjct 836 TCAGAAGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTGGTGGCAAAGGCTGGCTC 895
Query 974 TGAGT-CGATGGAGTTCAATGACATGTTCTGGGCTGTTCATCCAGGAGGACCTGCGATTC 1032
|| || || ||||||| |||||| | |||||||| |||||||| || ||||| || || |
Sbjct 896 TG-GTTCGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCGGGTGGACCAGCCATCC 954
Query 1033 TGAACCGTCTGGAGACAAAACTGAAGCTGGAGAAAGAGAAGCTGGAGA-GCAGCAGAAGG 1091
||| | | ||||||||||| ||||||||| || || |||||||| | |||||||||||
Sbjct 955 TGAGCGGGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGA-ATGCAGCAGAAGG 1013
Query 1092 GCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTG-TATGTGATGGAGTATA- 1149
|||||| ||||||| |||||||| ||||||||||| || || || | ||||| | |
Sbjct 1014 GCGTTGATGGATTATGGGAACGTAAGCAGCAACACCAT-CTTCTACATAATGGACAA-AG 1071
Query 1150 TGAGAGATGAGCT-GAAGAAGAAAGGTGAC-GCAGC-ACAAGAGTGGGGACTTGGCTTAG 1206
| ||| ||||||| || ||||||||| || | || | |||||||||| || |||||||
Sbjct 1072 TAAGAAATGAGCTTGA-GAAGAAAGGC-ACAG-AGGGAGAAGAGTGGGGTCTGGGCTTAG 1128
Query 1207 CTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCATCCGCAGCCTC 1253
|||||||||| |||||||| ||||||||| ||||||| | ||||||
Sbjct 1129 CTTTCGGACCGGGAATCACTTTCGAAGGCTTTCTCATGAGGAGCCTC 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49064194179
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5