BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02060.1
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311240 jgi|Araly1|311240|fgenesh1_pm.C_scaffold_1000020 3197 0.0
> Ahg311240 jgi|Araly1|311240|fgenesh1_pm.C_scaffold_1000020
Length=2139
Score = 3197 bits (1731), Expect = 0.0
Identities = 2012/2147 (94%), Gaps = 22/2147 (1%)
Strand=Plus/Plus
Query 45 ATGGTATCTTCTGTACCTAAACTCCATGCTTTGTTTGTCTCCAAGTCTCAACC---AGTT 101
||||| |||||||| |||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 1 ATGGTTTCTTCTGTCCCTAAACTCCATGCTTTGTTTGTCGCCAAGTCTCTACCAGTAGTT 60
Query 102 CTCCGAGCCGCCAAAGTTACCAATGAAGAAAGG---T-C--C-ACCAAATCAAAACTCGC 154
|||||||||||||| |||||||||||| |||| | | | |||||||||||||||||
Sbjct 61 ATCCGAGCCGCCAAAATTACCAATGAAG-AAGGTTCTGCGTCGACCAAATCAAAACTCGC 119
Query 155 CAGGTCCTTGGCCCGTGCCGTGAACTCTAACCCGTGGTCGGACGAACTCGAGTCTTCACT 214
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAGGTCCTTGGCGCGTGCCGTGAACTCTAACCCGTGGTCGGACGAACTCGAGTCTTCACT 179
Query 215 ATCATCTCTTCATCCGTCCCAAACC-ATCTCCAGAACCACCGTTCTCCAAACCCTGCGTC 273
||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 180 CTCATCTCTTCACCCGT-CTGAACCTCTCTCCAGAACCACCGTTCTCCAAACCCTGCGTC 238
Query 274 TCATCAAGGTCCCTGCGGATGGTCTCCGGTTCTTTGACTGGGTTTCCAACAAGGGGTTT- 332
|||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 239 TCATCAAGGTCCCTGCCGATGGTCTCCGGTTCTTCGACTGGGTTTACAACAA-GGGTTTC 297
Query 333 TCTCACAAAGAGCAGTCTTTCTTCCTCATGTTAGAGTTCCTCGGTCGAGCTCGCAATCTC 392
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 TCTCACAAAGAGCAGTCTTTCTTCCTCATGTTAGAGTTCCTAGGTCGAGCTCGCAATCTC 357
Query 393 AATGTGGCTCGCAATTTCTTGTTCTCCATCGAGAGAAGGTCTAATGGCTGCGTCAAGCTC 452
|||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 358 AATGCGGCTCGCAATTTCTTGTTCTCCATCGAGAAAAGGTCTAACGGCTGCGTCAAGCTC 417
Query 453 CAGGATCGCTACTTCAACAGCTTGATTAGGAGCTACGGGAACGCTGGGCTCTTCCAGGAG 512
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 CAGGATCGCTACTTCAACAGCTTGATTAGGAGCTACGGCAACGCTGGGCTCTTCCAGGAG 477
Query 513 TCAGTGAAGCTGTTCCAGACCATGAAGCAGATGGGCATCTCCCCTTCCGTTCTTACCTTC 572
|||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 478 TCAGTGAACCTGTTCCAGACCATGAAGAAGATGGGCATCTCGCCTTCCGTGCTTACCTTC 537
Query 573 AACAGTCTTCTCTCCATTTTGCTCAAGCGTGGCAGAACTGGAATGGCCCATGACTTGTTC 632
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 538 AACAGTCTTCTCTCGATTTTGCTTAAGCGTGGCCGAACTGGAATGGCCCATGACATGTTC 597
Query 633 GACGAAATGCGTCGTACCTACGGGGTTACCCCAGACTCCTATACTTTCAATACATTGATA 692
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 GACGAAATGCGCCGTACCTACGGGGTTACCCCAGATTCCTATACTTTCAATACATTGATA 657
Query 693 AATGGGTTTTGTAAGAACTCCATGGTCGATGAAGCCTTTAGGATTTTTAAGGATATGGAG 752
| ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 658 AGTGGGTTTTGCAAGAACTCCATGGTCGACCAAGCCTTTAGGATTTTTAAGGAAATGGAG 717
Query 753 CTGTATCA-TTGCAATCCTGACGTTGTTACATATAACACGATCATCGATGGGTTATGCAG 811
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTGTAT-AGTTGCAATCCTGACGTTGTTACATATAACACGATCATCGATGGGTTATGCAG 776
Query 812 AGCCGGCAAGGTCAAGATTGCACATAATGTTTTGAGTGGAATGTTGAAGAAAGCAACCGA 871
||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |
Sbjct 777 AGCTGGCAAGGTCAAGATTGCACACAATCTTTTGAATGGAATGTTGAAGAAAGCAACGGC 836
Query 872 TGTGCATCCCAACGTTGTTAGTTACACTACTCTGGTGCGAGGCTATTGTATGAAGCAGGA 931
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 837 TGTGCATCCCAACATTGTTAGTTACACTACTCTGCTGCGAGGCTATTGTATGAAGCAGGA 896
Query 932 AATTGATGAAGCAGTGCTTGTGTTTCATGACATGCTGAGTAGAGGGCTGAAACCCAATGC 991
||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 897 AATTGATGAAGCACTGCTTGTGTTTCATGAAATGCTGACCAGAGGGCTAAAACCCAATGC 956
Query 992 TGTTACTTACAATACTCTGATCAAGGGGCTCTCTGAGGCTCACAGATATGATGAGATCAA 1051
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 957 TGTAACTTACAATACTCTGATCAAGGGGCTCTCGGAGGCTCATAGATATGATGAGATCAA 1016
Query 1052 A-GATATCTTGATTGGAGGGAACGACGCATTTACCACTTTCGCTCCAGATGCCTGCACTT 1110
| ||| | |||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 1017 AGGAT-TTTTGATTGGAGGG---GACGCAGTTACCACTTTCTCTCCAGATGCCTGCACTT 1072
Query 1111 TTAATATTTTGATCAAAGCCCACTGCGATGCTGGTCATTTGGATGCAGCGATGAAGGTGT 1170
|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1073 TTAATATTTTGATCAAAGCCCACTGCGATGCTGGACATCTAGATGCAGCGATGAAGGTGT 1132
Query 1171 TCCAAGAAATGCTGAATATGAAGTTGCATCCTGATTCAGCTTCTTATAGTGTTTTGATTC 1230
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1133 TCCAAGAAATGCTGAATATGAAGTTGCATCCGGATTCAGCTTCATATAGTGTTTTGATTC 1192
Query 1231 GTACTCTGTGCATGAGAAACGAATTTGATAGAGCTGAGACATTGTTCAATGAGTTATTTG 1290
||||||||||| ||||||| |||||||||| ||| ||||||||||| |||||||| ||||
Sbjct 1193 GTACTCTGTGCCTGAGAAATGAATTTGATAAAGCCGAGACATTGTTTAATGAGTTGTTTG 1252
Query 1291 AGAAGGAAGTATTGTTAGGTAAGGATGAATGCAAGCCTCTCGCTGCAGCTTATAACCCAA 1350
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1253 AGAAGGAAGTATTGTTAGGTAAGAATGAATGCAAGCCTCTTGCTGCAGCTTATAACCCAA 1312
Query 1351 TGTTTGAATACTTATGTGCCAATGGGAAAACAAAACAAGCGGAGAAAGTTTTCAGGCAGC 1410
|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1313 TGTTCGAATACTTATGTGCCAATGGGAAAGCAAAACAAGCGGAGAAAGTTTTTAGGCAGC 1372
Query 1411 TGATGAAAAGAGGAGTGCAAGATCCGCCCTCTTACAAGACTTTGATAACGGGTCACTGCA 1470
||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||| |||||
Sbjct 1373 TGATGAAAAGAGGAGCGCAAGATCCATCCTCTTACAGGACTTTGATCACGGGTCTCTGCA 1432
Query 1471 GAGAAGGTAAATTCAAGCCTGCTTATGAGCTGTTGGTTCTAATGCTCAGGCGGGAATTTG 1530
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1433 GAGAAGGTAAATTCAAGGCTGCTTATGAGCTGTTGGTTCTAATGCTGAGGCGGGAATTTG 1492
Query 1531 TACCTGATCTTGAAACTTACGAGTTATTGATTGATGGACTGTTGAAGATAGGTGAAGCTC 1590
| ||||||| |||||| |||||| ||||||||||||| || |||||||||||||||||||
Sbjct 1493 TTCCTGATCCTGAAACCTACGAGGTATTGATTGATGGGCTATTGAAGATAGGTGAAGCTC 1552
Query 1591 TTCTTGCTCACGATACCCTACAAAGGATGCTAAGGAGCTCTTATCTTCCTGTTGCAACCA 1650
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1553 TTCTTGCTCATGATACCCTACAAAGGATGCTAAGGAGCTCTTATCTTCCGGTTGCAACCA 1612
Query 1651 CTTTCCATTCTGTACTTGCAGAACTTGCGAAAAGGAAATTTGCTAACGAGTCTTTCTGCT 1710
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 1613 CTTTCCATTCTGTACTTGCAGAACTTGTGAAAAGGAAATTTGCTAACGACTCTTTCGGCT 1672
Query 1711 TGGTAACGCTAATGTTGGAAAAACGAATAAGACAGAACATTGATCTTTCAACGCAGGTTG 1770
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1673 TGCTAACGGTAATGTTGGAAAAACGAATAAGACAGAACATTGATCTTTCAACGCAGGCTG 1732
Query 1771 TCAGATTGCTTTTTAGTAGTGCACAGAAAGAGAAGGCATTTCTGATTGTTAGGTTGCTTT 1830
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1733 TCAGATTGGTTTTTAGTAGTGCACAGAAAGAAAAGGCATTTCTGATTGTTAGGTTGCTTT 1792
Query 1831 ATGATAACGGGTATTTGGTTAAGATGGAGGAATTACTTGGTTACCTCTGCGAGAATAGAA 1890
|||| |||||||||||| ||||||||||||||||||||| || ||||||||||||| |||
Sbjct 1793 ATGACAACGGGTATTTGATTAAGATGGAGGAATTACTTGATTTCCTCTGCGAGAATCGAA 1852
Query 1891 AACTACTTGATGCACATACACTTGTTCTGTTTTGTCTGGAAAAAAGTCAAATGGTAGATA 1950
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1853 AACTGCTTGATGCACACACACTTGTTCTGTTTTGTCTGGAAAAGAGTCAAATGGTAGATA 1912
Query 1951 TCGACACATGCAACACGGTCATAGAAGGACTCTGTAAGCATAAGAGACACTCTGAAGCGT 2010
||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 TCGACACGTGTAACACGATCATAGAAGGACTCTGTAAGCATAAGAGACACTCTGAAGCGT 1972
Query 2011 TTAGTTTGTACAATGAATTAGTAGAACTAGGAAACCACCAACAGCTTAGCTGCCACGTGG 2070
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1973 TTAGTTTGTACAATGAATTAGTAGAACTAGGAAATCACCAACAGCTTAGCTGCCACGTGG 2032
Query 2071 TTTTGAGGAATGCCTTAGAGGCTGCTGGAAAGTGGGAAGAACTTCAGTTTGTGTCAAAGA 2130
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 TTTTGACAAATGCCTTAGAGGCTGCTGGAAAGTGGGAAGAACTTCAGTTTGTGTCAAAGA 2092
Query 2131 GGATGGCTACATTGAGAGAATCAGATGATTGCTCTGTATTAGAATGA 2177
||||||||||| ||||| |||||||| ||||| |||||| |||||||
Sbjct 2093 GGATGGCTACAATGAGAAAATCAGATAATTGCGCTGTATCAGAATGA 2139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81932116995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5