BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02065.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470069 jgi|Araly1|470069|fgenesh2_kg.1__23__AT1G02065.1 1509 0.0
> Ahg470069 jgi|Araly1|470069|fgenesh2_kg.1__23__AT1G02065.1
Length=1355
Score = 1509 bits (817), Expect = 0.0
Identities = 1183/1341 (88%), Gaps = 100/1341 (7%)
Strand=Plus/Plus
Query 92 aaaaaaaaaTGAATTTTAAAAAGGGACCTTTAagagagatggtgggagagagagcaat-- 149
||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 60 AAAAAAAAATGAA--TTAAAAAGGGACATTTAAGAGAGATGGT--GAGAGAGAGCAATAG 115
Query 150 --agagagagaAGGAAATCCACCCCCACAAATAG-AAAGTTAGGGTTTATTGGaaaaaaa 206
||||||||||||| |||| ||||||||||| |||||||||||||| |||||| |||
Sbjct 116 AGAGAGAGAGAAGGAGCTCCA--CCCACAAATAGAAAAGTTAGGGTTTACTGGAAAGAAA 173
Query 207 GAAAGAGAGTGTGTCTCTGTGTGTGATTCTAATAGAGGTGTAGTACGTCGCTTTGCTTTC 266
| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 174 G-AA-AGA---------------TGATTCTAATAGAGGTGTAGTACGTCGCTTTGCTTTC 216
Query 267 AGTCCATTAAAACCATTCCATAACCTATTCCGCACCGACATGTCTCCTC-CCCCTTTCCT 325
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 217 AGTCCATTAAAACCATTCCATAACCTATTCCGCACCGACATGTCTCCTCTCCCC-TTCCT 275
Query 326 TTATTAGCctctctctctctTTTTCACTACTCCGTCTTGATTTTATAAACAAAAGAAAGA 385
||||||| | |||||||||| | || | | ||| || |||||
Sbjct 276 TTATTAG-----C-CTCTCTTTTT-A-TA----------A----ACAAA-TTAA-AAAGA 311
Query 386 AAGAGAGAGAGATCTTCCTCGGGATTGCAACATGTTGGACTACGAATGGGATAATCCTTC 445
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 312 AAGAGAGAGAGATCTTCCTCGGGATTGCAACATGCTGGACTACGAATGGGATAATCCTTC 371
Query 446 CTC-CATCGTTCTCTCCGGAGATGAAAGAAACCCGGACTCTGA-CC--CGACCCGGTCAT 501
||| | | ||||||||||||||||||||||||||||||||||| || ||||||| || |
Sbjct 372 CTCGC-TTGTTCTCTCCGGAGATGAAAGAAACCCGGACTCTGACCCGACGACCCGATCCT 430
Query 502 CCTTCTCCTTTTTCGACCCCATCTCCCATTACAACAACGACCACCGTCACATCACCATTT 561
|| ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 431 CCCTCTCCTTTTTCGACCCCGTCTCTCATTACAACAACGACCACCGCCACATCACCATTT 490
Query 562 CTCCTCCCCTCCTCTCTTCCTTCTCTAACCAA-CAACAACAGCATCACCTCACCCTCTAC 620
|||||||||||||||||||||||||||| || || || || ||||||||||||||||||
Sbjct 491 CTCCTCCCCTCCTCTCTTCCTTCTCTAA-TAACCAGCAGCAACATCACCTCACCCTCTAC 549
Query 621 GGTCAGACCAACAGCAACAACCAGTTTCTTCATCATcaccatcaccaccactccttgtac 680
||||||| || ||||||||| || | || | | ||||| || || || |||||
Sbjct 550 GGTCAGAGCAGCAGCAACAA-CAACCTGTT-GT--T--TCATCATCATCA--CC-TGTAC 600
Query 681 gggtccaccac-caccaccacTCCTTACGGCGCCTCCGATCCCATCTACCATCCCCACTC 739
| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 --G-AC-CCACGCACCACCACTCCTTACGGCGCCTCCGATCCCATGTACCATCCCCACTC 656
Query 740 TTCCGCTCCGCCAGCCTCCTTGTTCTCCTACGACCAGACAGGACCGGGCTCGGGATCCGG 799
||||||| ||||||||||||||||||||||| | || || | ||||||||||||
Sbjct 657 TTCCGCT---CCAGCCTCCTTGTTCTCCTACGA-C---CA-GA-C---CTCGGGATCCGG 704
Query 800 ATCTTCCTACAACTTCCTCATCCCCAAGACAGAAGTGGATTTCACGTCCAACAGGATCGG 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ATCTTCCTACAACTTCCTCATCCCCAAGACAGAAGTGGATTTCACGTCCAACAGGATCGG 764
Query 860 GCTGAACCTGGGAGGCCGTACGTACTTCTCAGCGGCGGACGACGACTTCGTGAGCAGGCT 919
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 765 GCTGAATCTGGGAGGCCGTACGTACTTCTCAGCCGCGGACGACGACTTCGTGAGCAGGCT 824
Query 920 ATACAGGAGGTCTC-GACCAGGTGAGTCAGGGATGGCGAACTCGCTGAGCACGCCGCGGT 978
||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 825 GTACAGGAGGTC-CAGACCAGGTGAGTCAGGGATGGGGAACTCGCTGAGCACGCCGCGGT 883
Query 979 GCCAAGCAGAGGGATGCAACGCGGATCTGAGCCACGCGAAACACTACCACAGAAGGCACA 1038
||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 884 GCCAAGCCGAGGGATGCAACGCGGATCTGAGCCACGCGAAGCACTACCACCGCCGGCACA 943
Query 1039 AAGTGTGCGAATTCCACTCAAAAGCATCGACGGTTGTAGCCGCCGGACTAAGCCAAAGGT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 944 AAGTGTGCGAATTCCACTCAAAAGCATCGACGGTTGTAGCCGCCGGACTAAGCCAGAGGT 1003
Query 1099 TTTGCCAGCAATGCAGCAGGTTCCATTTGCTGTCGGAATTCGACAACGGGAAACGGAGCT 1158
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTTGCCAGCAGTGCAGCAGGTTCCATTTGCTGTCGGAATTCGACAACGGGAAACGGAGCT 1063
Query 1159 GCCGTAAGCGACTTGCTGACCATAACCGCCGCCGCCGTAAATGTCACCAATCAGCCTCCG 1218
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1064 GCCGTAAGCGACTTGCTGACCATAACCGCCGCCGCCGTAAATGTCACCAATCTGCCTCCG 1123
Query 1219 CCACCCAAGACACCGGCACCGGCAAGACTACTCCAAAGTCACCGAACGATTCGGGTGTTA 1278
||||||||||| ||| | | ||| | ||||||||||||||||| ||||| ||||| |
Sbjct 1124 CCACCCAAGACGCCG-C-C----AAGCCAACTCCAAAGTCACCGAAGGATTCTGGTGTAA 1177
Query 1279 AAGCGTCATC-GTCACCGTCGTCCAACGCGCCGCCTACGATATCACTGGAGTGCTTCCGG 1337
||||||| || ||| ||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1178 AAGCGTC-TCCGTCGCCGTC--C-AACGCGCCGACTACGATATCACTGGAGTGCTTCCGG 1233
Query 1338 CAAAGGCAGTTCCAAACGACAGCGTCTTCATCCACGTCAGCGTCTTCGTCTTCAAATTCA 1397
|||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||
Sbjct 1234 CAAAGGCAGTTCCAAACGACAGCGTCGTCTTCCACGTCAGCGTCTTCCTCCTCAAATTCA 1293
Query 1398 ATGTTTTTCTCCAGCGGATAG 1418
||||||||||| | |||||||
Sbjct 1294 ATGTTTTTCTCAACCGGATAG 1314
Score = 75.0 bits (40), Expect = 2e-12
Identities = 53/58 (91%), Gaps = 5/58 (9%)
Strand=Plus/Plus
Query 3 TTTCTTTCTTCTCCATCTTCAC-TTTTTTAAGTAGCTAGATGACAAGACAGACAGCTA 59
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 1 TTTCTTTCTTCTCCATCTTCACTTTTTTTAAGTAG--AG--GACAAGACAGACAGCTA 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5