BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02070.1 Length=604 Score E Sequences producing significant alignments: (Bits) Value Ahg470066 jgi|Araly1|470066|fgenesh2_kg.1__20__AT1G02070.1 660 0.0 > Ahg470066 jgi|Araly1|470066|fgenesh2_kg.1__20__AT1G02070.1 Length=547 Score = 660 bits (357), Expect = 0.0 Identities = 488/550 (89%), Gaps = 13/550 (2%) Strand=Plus/Plus Query 18 ATCATGGAGAGAGTGTGTTGCATGTGCGGTGATGTCGGTTTCTCCGACAAGCTCTTCAGC 77 |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1 ATCATGGAGAGAGTATGTTGCATGTGCGGCGACGTCGGTTTCTCCGACAAGCTCTTCAGC 60 Query 78 TGCGGTCACTGCCGCTGCCGCTTCCAACACTCTTATTGTAGCAACTACTACGGCCAGTTT 137 ||||| |||||||| |||||||| || |||||||||||||||||||||||| || ||||| Sbjct 61 TGCGGGCACTGCCGATGCCGCTTACAGCACTCTTATTGTAGCAACTACTACAGCGAGTTT 120 Query 138 GCGGAGCCTACCGAGATTTGCGACTGGTGCCGCAGCGACGACCGGAAGCTGAGCAACGTT 197 ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 121 GCGGAGCCTGCCGAGATTTGCGACTGGTGCCGCAGCGACGACCGGAAGCTGGGAAACGTT 180 Query 198 GCTAGACATGGCGGTTCTTCTTCAAAGAAGCCTTCTTCTTCGGTTAAATATG-AAA--AT 254 |||||||||||||| ||||||||||||||| |||||||||| ||||| |||| ||| || Sbjct 181 GCTAGACATGGCGGCTCTTCTTCAAAGAAGTCTTCTTCTTCCGTTAATTATGAAAATGAT 240 Query 255 GACTTCTCAAACAGATCGGAATATTCGCCCGGCCACCG-GATCAAGCATAACAATAACCG 313 || ||| ||||| || |||| |||||| |||||| || |||||| ||||||||||||| Sbjct 241 GAGTTCACAAACCGACCGGACTATTCGTCCGGCC-GCGAGATCAATCATAACAATAACCA 299 Query 314 TCACGATCAAGTAGCC-AAGGGCGTTGCTGGAGATGGAGGCGGAGTTACGTCGCCTAAGA 372 ||| | |||||| ||| || |||||||| |||| |||||||||||| |||||||||||| Sbjct 300 TCATGGTCAAGTGGCCGAA-GGCGTTGCCGGAGCTGGAGGCGGAGTGCCGTCGCCTAAGA 358 Query 373 CGGCCACACGAAGGTACAAGCTTCTCAAAGATGTCATGTGTTAGTTCCACCTAAACGAGA 432 |||||||||||||||||||||||||||||||||||||||||||||| | || | ||| | Sbjct 359 CGGCCACACGAAGGTACAAGCTTCTCAAAGATGTCATGTGTTAGTTTAAACTGA-CGAAA 417 Query 433 GGTATTAGAAGACTTACT-ATAATCATACTACTCTTTCGAGACTGTGTGATTAAATTATG 491 |||||||||| | ||| | ||||| ||| |||||||| |||| ||||||||||||||||| Sbjct 418 GGTATTAGAAAAATTAGTTATAATAATATTACTCTTTGGAGAATGTGTGATTAAATTATG 477 Query 492 TATAA-TTAG--ACTACGGAGAGAGCAAATTAAAAAAGAAAA-CGTCgttgtttgttttc 547 ||||| |||| |||||||||||| |||| |||||| |||| |||| |||||||||||| Sbjct 478 TATAAATTAGCCACTACGGAGAGAACAAAAAAAAAAAAAAAAGCGTCTTTGTTTGTTTTC 537 Query 548 atcctttttt 557 |||||||||| Sbjct 538 ATCCTTTTTT 547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22073168943 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5