BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02070.1

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470066 jgi|Araly1|470066|fgenesh2_kg.1__20__AT1G02070.1           660    0.0  


> Ahg470066 jgi|Araly1|470066|fgenesh2_kg.1__20__AT1G02070.1
Length=547

 Score =  660 bits (357),  Expect = 0.0
 Identities = 488/550 (89%), Gaps = 13/550 (2%)
 Strand=Plus/Plus

Query  18   ATCATGGAGAGAGTGTGTTGCATGTGCGGTGATGTCGGTTTCTCCGACAAGCTCTTCAGC  77
            |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct  1    ATCATGGAGAGAGTATGTTGCATGTGCGGCGACGTCGGTTTCTCCGACAAGCTCTTCAGC  60

Query  78   TGCGGTCACTGCCGCTGCCGCTTCCAACACTCTTATTGTAGCAACTACTACGGCCAGTTT  137
            ||||| |||||||| |||||||| || |||||||||||||||||||||||| || |||||
Sbjct  61   TGCGGGCACTGCCGATGCCGCTTACAGCACTCTTATTGTAGCAACTACTACAGCGAGTTT  120

Query  138  GCGGAGCCTACCGAGATTTGCGACTGGTGCCGCAGCGACGACCGGAAGCTGAGCAACGTT  197
            ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  121  GCGGAGCCTGCCGAGATTTGCGACTGGTGCCGCAGCGACGACCGGAAGCTGGGAAACGTT  180

Query  198  GCTAGACATGGCGGTTCTTCTTCAAAGAAGCCTTCTTCTTCGGTTAAATATG-AAA--AT  254
            |||||||||||||| ||||||||||||||| |||||||||| ||||| |||| |||  ||
Sbjct  181  GCTAGACATGGCGGCTCTTCTTCAAAGAAGTCTTCTTCTTCCGTTAATTATGAAAATGAT  240

Query  255  GACTTCTCAAACAGATCGGAATATTCGCCCGGCCACCG-GATCAAGCATAACAATAACCG  313
            || ||| ||||| || |||| |||||| ||||||  || |||||| ||||||||||||| 
Sbjct  241  GAGTTCACAAACCGACCGGACTATTCGTCCGGCC-GCGAGATCAATCATAACAATAACCA  299

Query  314  TCACGATCAAGTAGCC-AAGGGCGTTGCTGGAGATGGAGGCGGAGTTACGTCGCCTAAGA  372
            ||| | |||||| ||| || |||||||| |||| ||||||||||||  ||||||||||||
Sbjct  300  TCATGGTCAAGTGGCCGAA-GGCGTTGCCGGAGCTGGAGGCGGAGTGCCGTCGCCTAAGA  358

Query  373  CGGCCACACGAAGGTACAAGCTTCTCAAAGATGTCATGTGTTAGTTCCACCTAAACGAGA  432
            ||||||||||||||||||||||||||||||||||||||||||||||  | || | ||| |
Sbjct  359  CGGCCACACGAAGGTACAAGCTTCTCAAAGATGTCATGTGTTAGTTTAAACTGA-CGAAA  417

Query  433  GGTATTAGAAGACTTACT-ATAATCATACTACTCTTTCGAGACTGTGTGATTAAATTATG  491
            |||||||||| | ||| | ||||| ||| |||||||| |||| |||||||||||||||||
Sbjct  418  GGTATTAGAAAAATTAGTTATAATAATATTACTCTTTGGAGAATGTGTGATTAAATTATG  477

Query  492  TATAA-TTAG--ACTACGGAGAGAGCAAATTAAAAAAGAAAA-CGTCgttgtttgttttc  547
            ||||| ||||  |||||||||||| ||||  |||||| |||| |||| ||||||||||||
Sbjct  478  TATAAATTAGCCACTACGGAGAGAACAAAAAAAAAAAAAAAAGCGTCTTTGTTTGTTTTC  537

Query  548  atcctttttt  557
            ||||||||||
Sbjct  538  ATCCTTTTTT  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22073168943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5