BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02074.1

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918741 jgi|Araly1|918741|scaffold_100022.1                        119    6e-27


> Ahg918741 jgi|Araly1|918741|scaffold_100022.1
Length=293

 Score =  119 bits (64),  Expect = 6e-27
 Identities = 119/144 (83%), Gaps = 9/144 (6%)
 Strand=Plus/Plus

Query  6    ATGGAGGCAATCGGAGGGGAAACAAAACCGACGGCG-ATGTGAAGTTCCC-GGTGGTTTC  63
            ||| ||| |||| || |||| |||||| | ||| || |  |  ||||||| |||||||||
Sbjct  21   ATGAAGG-AATCCGA-GGGAGACAAAATCAACGACGAAAAT-CAGTTCCCTGGTGGTTTC  77

Query  64   GC-TAACTTGGAACCTAAACGGTCGGAGAGG-GATCCACGTGGCAGAATTCAGGAGATAT  121
             | |  |||| ||  ||||||||||||| || ||||||||||||||| |||||| |||||
Sbjct  78   -CTTGGCTTGAAATATAAACGGTCGGAG-GGTGATCCACGTGGCAGATTTCAGGCGATAT  135

Query  122  TTTTGGAGTTTGGTTGGCCATGTT  145
            ||||||||||||||||||||||||
Sbjct  136  TTTTGGAGTTTGGTTGGCCATGTT  159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 4735344364


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5