BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02090.1
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470065 jgi|Araly1|470065|fgenesh2_kg.1__19__AT1G02090.1 1465 0.0
> Ahg470065 jgi|Araly1|470065|fgenesh2_kg.1__19__AT1G02090.1
Length=935
Score = 1465 bits (793), Expect = 0.0
Identities = 889/936 (95%), Gaps = 4/936 (0%)
Strand=Plus/Plus
Query 75 GGAAGATGGATATCGAGCAGAAGCAAGCCGAGATCATTGATCAGCTCGTGAAGCGAGCTT 134
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1 GGAAGATGGATATCGAGCAGAAGCAAGCCGAGATCATTGATCAGCTCGTCAAACGAGCTT 60
Query 135 CTACTTGCAAATCCGAGGCTCTGGGCCCGCTCATCATCGAAGCCACATCGCATCCTTCTC 194
||||||||||| |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 61 CTACTTGCAAACCCGAGGCTCTCGGTCCTCTCATCATCGAAGCCACATCGCATCCTTCTC 120
Query 195 TCTTCGCCTTCTCCGAGATTTTGGCTCTACCCAATGTTGCCCAGCTTGAAGGAACCACAG 254
||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 121 TCTTCGCCTTCTCCGAGATTTTGGCTCTACCCACTGTTACCCAGCTTCAAGGAACCACAG 180
Query 255 ATTCTGTGTACCTGGATCTACTACGCTTGTTTGCCCATGGCACCTGGGGAGACTACAAAT 314
||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||
Sbjct 181 ATTCTGTGTACCTGGATGTACTGCGGTTGTTTGCCCATGGCACCTGGGGTGACTACAAAT 240
Query 315 GCAATGCCACCCGTCTTCCGCACTTGTCCCCTGACCAAATTCTTAAGCTTAAGCAGCTCA 374
||||||| ||||| |||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 241 GCAATGCTTCCCGTATTCCTCAGTTGTCCCCTGACCAAATTCTCAAGCTAAAGCAGCTCA 300
Query 375 CTGTCCTCACCCTTGCTGAGTCTAACAAGGTATTGCCCTATGATACACTAATGGTCGAGT 434
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CTGTGCTCACCCTTGCTGAGTCTAACAAGGTATTGCCCTATGATACACTCATGGTCGAGT 360
Query 435 TAGATGTTTCCAATGTTCGCGAACTCGAGGACTTTCTTATCAATGAATGCATGTATGCGG 494
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TAGATGTTACCAATGTTCGCCAACTCGAGGACTTTCTTATCAATGAATGCATGTACGCGG 420
Query 495 GTATAGTTAG-GGGAAAACTGGATCAGTTAAAAAGATGTTTTGAGGTTCCGTTTGCAGCT 553
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTATAGTTAGAGGG-AAACTTGATCAGTTAAAAAGATGTTTTGAGGTTCCGTTTGCAGCT 479
Query 554 GGTAGGGATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGGTTG 613
|||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 480 GGTAGGGATCTAAGGCCAGGACAACTTGGGAATATGTTAGACACATTGTCCAACTGGTTG 539
Query 614 AACACGTCAGAGAATCTGCTCATTTCAATTCAAGACAAGATCAAATGGGCGGACAATATG 673
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 540 AATACGTCAGAGAATCTGCTCATTTCAATTCAAGACAAGATCAAATGGGCAGACAGTATG 599
Query 674 AGTGAGATGGACAAAAAACATCGTAAGGAAGCAGAAGAAGGGGTGGAAGAAGTGAAGAAG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTGAGATGGACAAAAAACATCGTAAGGAAGCAGAAGAAGGGGTGGAAGAAGTGAAGAAG 659
Query 734 TCTCTGTCCATGAAGGGGGATGTTGACATCAGAGGGAATAAGGAGATGTTTGGGGAACCA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTCTGTCCATGAAGGGGGATGTTGACATCAGAGGGAATAAGGAGATGTTTGGGGAACCA 719
Query 794 AGTGGAGTGATGGACTACGAAGAAGATGGGATCCGACCAAAGAGGAGGAGGCATCCTGTA 853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 AGTGGAGTGATGGACTACGAAGAAGATGGGATCCGACCAAAGAGGAGGAGGCATCCGGTA 779
Query 854 ACAAGGTAGAGGAGCAAGAGAGAGCAAATGGTCAGTGCGGATTGACATTCCATTTACCGA 913
||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 780 ACAAGGTAGAGGAGCGAGCGAGAGCAAATGGTCAGTGTGGACTGACATTCCATTTACCGA 839
Query 914 GAGTAGATTATGATTATTTGGTTG-CGGAT-TTTCAACTTGTATAAGATCCTCTGTTCTC 971
|||||||||||||| |||| | || ||||| |||||||||||| || |||||||||||||
Sbjct 840 GAGTAGATTATGATGATTTTGATGGCGGATCTTTCAACTTGTAGAAAATCCTCTGTTCTC 899
Query 972 TCTCACAATAACCCCTTGTTATGTTTGATTTCCCTC 1007
||||||||||||||||||||||||||| ||||||||
Sbjct 900 TCTCACAATAACCCCTTGTTATGTTTGTTTTCCCTC 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39609710763
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5