BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02100.3
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918735 jgi|Araly1|918735|scaffold_100016.1 1655 0.0
> Ahg918735 jgi|Araly1|918735|scaffold_100016.1
Length=1046
Score = 1655 bits (896), Expect = 0.0
Identities = 990/1034 (96%), Gaps = 12/1034 (1%)
Strand=Plus/Plus
Query 47 GACGACGATGGCGGAATCTCGCAGCAACAGAGCGGCGGTTCAGGCTACTAACGACGATGC 106
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 GACGACGATGGCAGAATCTCGCAGCAACAGAGCGGCGGTTCAGGCTACTAACGACGATGC 74
Query 107 ATCCGCCAGTAAATTGTCTTGTGTCAAAAAGGGATATATGAAAGACGACTATGTTCATCT 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATCCGCCAGTAAATTGTCTTGTGTCAAAAAGGGATATATGAAAGACGACTATGTTCATCT 134
Query 167 CTTTGTGAAAAGACCTGTTCGAAGATCTCCCATCATTAATCGAGGTTACTTTTCCCGTTG 226
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 135 CTTTGTGAAAAGACCTGTTCGACGATCTCCCATCATTAATCGAGGTTACTTTTCCCGTTG 194
Query 227 GGCTGCCTTCCGAAAGCTTATGTCTCAGTTTCTTCTAA-GCGGGAC--A-AGTTCTAAGA 282
|||||||||||||||||||||||||||||||| || || |||| || | | | | ||||
Sbjct 195 GGCTGCCTTCCGAAAGCTTATGTCTCAGTTTC-TCGAATGCGGTACTAATAATGCCAAGA 253
Query 283 AACAGATACTGTCTCTCGGAGCTGGCTTTGATACTACCTATTTTCAGTTGCTGGATGAGG 342
||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 254 CACAGATACTCTCACTCGGAGCTGGCTTTGATACTACGTATTTTCAGTTGCTGGATGAGG 313
Query 343 GGAATGGGCCCAATCTCTATGTGGAACTTGATTTTAAGGAGGTGACTAGCAAGAAGGCTG 402
|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 314 GGAAAGGGCCCAATCTCTATGTGGAACTTGATTTTAAGGAGGTCACAAGCAAGAAGGCTG 373
Query 403 CTGTTATACAAAACTCCAGCCAACTCAGGGACAAACTAGGAGCCAATGCATCTATTTCTA 462
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
Sbjct 374 CTGTTATAGAAAACTCCTCCCAACTCAGGGACAAACTAGGACCCAATGCATCTATTTCAA 433
Query 463 TTGACG-AAGGACAAGTTCTCAGTGATCATTACAAGTTACTTCCAGTTGACCTGCGCGAT 521
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 434 TTGA-GAAAGGACAAGTGCTCAGTGATCATTACAAGTTACTTCCAGTTGACCTGCGCCAT 492
Query 522 ATACCAAAATTAAGAGATGTTATATCCTTTGCAGATATGGATCTAAGTCTGCCGACGTTT 581
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 493 ATACCAAAATTAAGAGATGTTATATCCTTTGCAGATATGGATCCAAGTCTGCCGACATTT 552
Query 582 ATTATTGCAGAATGTGTTTTGATTTATCTGGACCCCGATTCAAGCCGTGCCATCGTCAAT 641
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 553 ATTATTGCAGAATGTGTTTTGATATATCTGGACCCCGATTCAAGCCGTGCCATCGTCAAT 612
Query 642 TGGTCGTCAAAAACGTTTTCAACTGCAGTATTTTTCTTATATGAGCAGATCCATCCAGAT 701
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGGGCGTCAAAAACGTTTTCAACTGCAGTATTTTTCTTATATGAGCAGATCCATCCAGAT 672
Query 702 GATGCATTTGGGCATCAAATGATTAGAAATTTGGAGAGTCGGGGATGTGCACTCTTAAGC 761
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GATGCATTTGGACATCAAATGATTAGAAATTTGGAGAGTCGGGGATGTGCACTCTTAAGC 732
Query 762 ATTGATGCATCACCAACTTTACTTGCAAAGGAGAGATTGTTTCTTGATAATGGATGGCAG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 ATTGATGCATCACCAACTTTACTTGCAAAGGAGAGATTGTTTCTTGATAATGGATGGCAG 792
Query 822 AGAGCTGTTGCCTGGGACATGCTAAAAGTGTATGGTAGTTTTGTTGATACTCAAGAAAAA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGAGCTGTTGCCTGGGACATGCTAAAAGTGTATGGTAGTTTTGTTGATACTCAAGAAAAA 852
Query 882 CGCAGGATCGAGCGATTGGAGTTGTTTGACGAATTTGAAGAGTGGCACATGATGCAGGAA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CGCAGGATCGAGCGATTGGAGTTGTTTGACGAATTTGAAGAGTGGCACATGATGCAGGAA 912
Query 942 CATTACTGTGTCACATATGCTGTCAATGATGCAATGGGAATATTTGGTGATTTCGGTTTC 1001
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 913 CATTACTGTGTCACATATGCTGTCAATGACGCAATGGGAATATTTGGAGATTTTGGTTTC 972
Query 1002 ACAAGAGAAGGGGGCGGTGAAAGAATGAG---CTCATCAGCGTCATCACCTTGAAAAG-- 1056
|||| |||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 973 ACAAAAGAAGGGGGCGGTGAAAGAATGAGTAGCTCATCAGCATCATCACCTTGAAAAAAA 1032
Query 1057 GAGGAGGGTTTGTA 1070
||||||||||||||
Sbjct 1033 GAGGAGGGTTTGTA 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5