BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02110.1
Length=2314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470059 jgi|Araly1|470059|fgenesh2_kg.1__13__AT1G02110.1 1914 0.0
> Ahg470059 jgi|Araly1|470059|fgenesh2_kg.1__13__AT1G02110.1
Length=2042
Score = 1914 bits (1036), Expect = 0.0
Identities = 1148/1199 (96%), Gaps = 20/1199 (2%)
Strand=Plus/Plus
Query 109 ATGGGATGCACGGCCTCCAAGCTCGACAGTGAGGATGCTGTCCGTCGCTGCAAGGAGCGG 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGATGCACGGCCTCCAAGCTCGACAGTGAGGATGCTGTCCGTCGCTGCAAGGAGCGG 60
Query 169 CGCCGTCTTATGAAGGACGCCGTCTACGCTCGTCACCATCTCGCCGCCGCTCACTCTGAC 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCCGTCTTATGAAGGACGCCGTCTACGCTCGTCACCATCTCGCCGCCGCTCACTCTGAC 120
Query 229 TACTGCCGCTCCCTTCGTCTCACTGGCTCTGCCCTCTCCTCCTTCGCCGCCGGCGAGCCC 288
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 121 TACTGCCGCTCCCTTCGTCTCACCGGCTCTGCCCTCTCCTCCTTCGCCTCCGGCGAGCCC 180
Query 289 CTCTCCGTCTCCGAGAATACTCCCGCTGTTTTTCTCCGCCCTTCCTCCAGTCAGGACGCG 348
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTCTCCGTCTCCGAGAACACTCCCGCTGTTTTTCTCCGCCCTTCCTCCAGCCAGGACGCG 240
Query 349 CCACGTGTCCCTTCTTCCCATTCCCCAGAACCCCCTCCTCCGCCCATCCGCAGCAAGCCT 408
|||||||||||||||||||||||| || || |||| | ||||||||||||||||||||||
Sbjct 241 CCACGTGTCCCTTCTTCCCATTCCACA-AAGCCCC-C-TCCGCCCATCCGCAGCAAGCCT 297
Query 409 AAGCCTACTAGGCCTAGGAGGCTTCCACACATTCTCTCCGACTCCTCTCCTTCTTCCTCT 468
||||||| || ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 298 AAGCCTA---GG---AGG---CTTCCCCACATTCTCTCCGACTCCTCTCCTTCTTCCTCT 348
Query 469 CCTGCCACCAGTTTCTATCCCACTGCTCACCAGAACTCTACTTACTCTCGCTCTCCATCT 528
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 349 CCGGCCACCTCTTTCTATCCCACTGCTCACCAGAACTCTACCTACTCTCGCTCTCCTTCT 408
Query 529 CAAGCTTCCTCTGTCTGGAACTGGGAGAATTTCTACCCTCCCTCTCCCCCCGACTCCGAG 588
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 409 CAAGCTTCCTCTGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGACTCTGAG 468
Query 589 TACTTCGAACGCAAAGCTCGCCAGAACCACAAGCACCGTCCTCCTTCCGACTACGACGCC 648
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 469 TTCTTCGAACGCAAAGCTCGCCAGAACCAGAAGCACCGTCCTCCTTCCGACTACGACGCC 528
Query 649 GAAACTGAAAGATCCGACCACGATTACTGCCACTCACGGAGAGATGCCGCCGAGGAAGTT 708
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 529 GAAACTGAGAGATCCGACCACGATTACTTCCACTCCCGGAGAGATGCCGCCGAGGAAGTT 588
Query 709 CACTGCAGCGAGTGGGGCGACGACCACGACCGTTTCACTGCCACCTCTTCGTCCGACGGA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CACTGCAGCGAGTGGGGCGACGACCACGACCGTTTCACTGCCACCTCTTCGTCCGACGGA 648
Query 769 GATGGGGAGGTCGAAACTCACGTTTCCAGATCCGGTATTGAAGAAGA-G--CCTGTGAAA 825
|||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 649 GATGGGGAGGCCGAAACCCACGTTTCCAGATCCGGTATTGAAGAAGAAGAGCCTGTGAAA 708
Query 826 CAACCACATCAAGACCCAAATGGCAAAGAGCA-CTCTGACCATGTTACCACTTCTTCCGA 884
||| | |||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct 709 CAAG-AG--CAAGACCCAAATGGCAAAGA-CAACTCTGACCATGTTACCACTTCTTCGGA 764
Query 885 CTGCTACAAGACCAAATTGGTGGTAAGGCACAAGAATTTGAAGGAGATCCTTGACGCCGT 944
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 765 CTGCTACAAGACCAAATTGGTGGTAAGGCACAAGAATTTGAAGGAGATCCTCGACGCCGT 824
Query 945 TCAAGACTACTTCGACAAGGCTGCCTCCGCTGGGGACCAGGTCTCCGCCATGCTTGAGAT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TCAAGACTACTTCGACAAGGCTGCCTCCGCTGGGGACCAGGTCTCCGCCATGCTTGAGAT 884
Query 1005 CGGCCGGGCTGAGCTCGACCGCAGCTTCAGCAAGCTGAGGAAGACGGTGTATCATTCAAG 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CGGCCGGGCTGAGCTCGACCGCAGCTTCAGCAAGCTGAGGAAGACGGTGTATCATTCAAG 944
Query 1065 CAGTGTGTTCAGCAACTTGAGCGCAAGCTGGACCTCAAAACCCCCATTGGCAGTCAAATA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CAGTGTGTTCAGCAACTTGAGCGCAAGCTGGACCTCAAAACCCCCATTGGCAGTCAAATA 1004
Query 1125 CAAGCTCGATGCATCTACCCTGAATGATGAACAAGGCGGCCTCAAGAGCCTCTGCTCCAC 1184
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1005 CAAGCTCGATGCATCTACCCTGAATGATGAACATGTCGGCCTCAGGAGCCTCTGCTCCAC 1064
Query 1185 TCTAGACCGACTCCTCGCTTGGGAAAAGAAGCTTTATGAGGATGTCAAGGCAAGAGAAGG 1244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1065 TCTAGACCGACTCCTCGCTTGGGAGAAGAAGCTTTATGAGGATGTCAAGGCAAGAGAAGG 1124
Query 1245 AGTTAAGATTGAGCACGAGAAGAAGCTGTCTGCGCTGCAGAGTCAGGAGTATAAGGGAG 1303
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1125 AGTTAAGATTGAGCACGAGAAGAAGCTGTCTGCGCTGCAGAGTCAGGAGTACAAGGGAG 1183
Score = 1441 bits (780), Expect = 0.0
Identities = 834/861 (97%), Gaps = 0/861 (0%)
Strand=Plus/Plus
Query 1374 AGAAGCTGTTTTAACCACGTCTAATGCCATTCTCCGCCTCCGGGACACTGACCTTGTCCC 1433
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AGAAGCTGTTTTGACCACGTCTAATGCCATTCTCCGCCTCCGGGACACTGACCTTGTCCC 1241
Query 1434 TCAGCTTGTTGAACTCTGCCACGGATTAATGTACATGTGGAAGTCAATGCACGAGTATCA 1493
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1242 TCAACTTGTTGAACTCTGCCACGGATTAATGTACATGTGGAAGTCAATGCACGAGTACCA 1301
Query 1494 CGAAATCCAGAACAACATCGTGCAACAAGTCCGTGGCCTGATCAACCAAACAGAGAGAGG 1553
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1302 CGAAATCCAGAACAACATCGTGCAACAAGTCCGTGGCCTGATCAACCATACAGAGAAAGG 1361
Query 1554 TGAGTCAACATCAGAGGTACACCGGCAGGTGACGCGGGACCTAGAGTCAGCTGTGTCCTT 1613
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1362 TGAGTCAACATCAGAGGTACACCGGCAGGTGACGCGGGACCTAGAATCAGCTGTCTCCTT 1421
Query 1614 GTGGCATTCGAGCTTCTGTCGCATCATTAAATTCCAGAGGGAGTTCATATGCTCTCTCCA 1673
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1422 GTGGCATTCGAGCTTCTGTCGCATCATCAAATTCCAGAGGGAGTTCATATGCTCTCTCCA 1481
Query 1674 CGCATGGTTCAAGCTGAGCCTGGTTCCCCTGAGCAACGGAGACCCAAAGAAACAGCGGCC 1733
||| ||||||||||| || || |||||||||||||||| ||||||||||||| |||||||
Sbjct 1482 CGCCTGGTTCAAGCTCAGTCTTGTTCCCCTGAGCAACGAAGACCCAAAGAAAGAGCGGCC 1541
Query 1734 AGACTCATTTGCCTTGTGCGAGGAGTGGAAGCAGAGCCTGGAACGGGTGCCTGACACAGT 1793
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 AGAGTCATTTGCCTTGTGCGAGGAGTGGAAGCAGAGCCTGGAACGGGTGCCTGACACAGT 1601
Query 1794 GGCGTCAGAAGCCATAAAGAGCTTTGTAAACGTGGTACATGTGATATCAATAAAGCAGGC 1853
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1602 GGCGTCAGAAGCCATAAAGAGCTTTGTAAACGTGGTCCATGTCATATCAATAAAGCAGGC 1661
Query 1854 GGAAGAGGTGAAGATGAAGAAACGCACGGAGAGTGCAGGAAAGGAGCTGGAGAAGAAAGC 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 GGAAGAGGTGAAGATGAAGAAACGCACGGAGAGTGCAGGAAAGGAGCTGGAGAAGAAAGC 1721
Query 1914 ATCCTCACTGAGGAGCATAGAGAGGAAGTACTACCAGGCATACTCGACGGTTGGGATAGG 1973
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1722 ATCCTCACTAAGGAGCATAGAGAGGAAGTACTACCAGGCTTACTCGACGGTTGGGATAGG 1781
Query 1974 CCCTGGACCGGAGGTGTTGGACTCACGGGACCCGCTATCTGAGAAGAAATGTGAGCTGGC 2033
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1782 CCCTGGACCGGAGGTGTTGGACGCACGGGACCCGCTTTCTGAGAAGAAATGTGAGCTGGC 1841
Query 2034 GGCATGTCAGAGGCAGGTGGAGGATGAGGTAATGAGGCACGTGAAGGCTGTGGAGGTGAC 2093
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1842 GGCATGTCAGAGGCAGGTGGAAGATGAGGTAATGAGGCACGTGAAGGCTGTGGAGGTGAC 1901
Query 2094 ACGAGCTATGACTCTCAACAATCTACAAACCGGCCTGCCCAATGTATTCCAGGCCTTGAC 2153
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1902 ACGAGCTATGACTCTCAACAATCTGCAAACCGGCCTGCCCAATGTATTCCAGGCCTTGAC 1961
Query 2154 CAGCTTCTCATCTCTCTTCACTGAATCTCTCCAGACTGTCTGTTCTCGTTCCTACTCCAT 2213
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1962 CAGCTTCTCATCTCTCTTCACTGAATCCCTACAGACTGTTTGTTCTCGTTCCTACTCCAT 2021
Query 2214 CAACTGATTATGTCCAAGTTT 2234
|||||||||||| ||||||||
Sbjct 2022 CAACTGATTATGGCCAAGTTT 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87150480560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5