BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02120.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470058 jgi|Araly1|470058|fgenesh2_kg.1__12__AT1G02120.1 3127 0.0
> Ahg470058 jgi|Araly1|470058|fgenesh2_kg.1__12__AT1G02120.1
Length=1946
Score = 3127 bits (1693), Expect = 0.0
Identities = 1882/1970 (96%), Gaps = 26/1970 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGCTTTCTACTGCTTCCGTTTCGGGGAGCGTCGACCTTCCTCGAGGAACCATG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCGATGCTTTCTACTGCTTCCGTTTCGGGGAGCGTCGACCTTCCTCGGGGAACCATG 60
Query 61 AAGGTTGACTCGTCTGCGTCTCCGGAGGTCGTATCCGATCTCCCACCATCTTCCCCAAAG 120
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 61 AAGGTTGAATCGTCTGCGTCTCCGGAGGTCGTTTCCGATCTCCCACCATCGTCCCCCGAG 120
Query 121 GGCTCACCTGATCGCCATGACCCTTCCACTTCTTCTCCGAGCCCCAGTCGTGGTGGTGAC 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGATCACCTGATCGCCATGACCCTTCCACTTCTTCTCCGAGCCCCAGTCGTGGTGGTGAC 180
Query 181 AATCAGTCTGAAGTCATATCCAAGAGTGAAGAGTATCGGCAATTGTTTCGGCTTCCAGCT 240
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AATCAGTCTGAAGTCATATCGAAGAGTGAAGAGTATCGGCAATTATTTCGGCTTCCAGCT 240
Query 241 GACGAAATCCTTGTTCAAGATTTTAACTGTGCTTGTCAGGAGAGTATTCTTATGCAGGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACGAAATCCTTGTTCAAGATTTTAACTGTGCTTGTCAGGAGAGTATTCTTATGCAGGGT 300
Query 301 CATATGTACCTCTTCATCCATTATATCTGCTTTTACTCCAACATCTTTGGTTATGAGACC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATATGTACCTCTTCATCCATTATATCTGCTTTTACTCCAACATCTTTGGTTATGAGACC 360
Query 361 AAGAAAATTATCCCATTTGCTGAAATATCTTGTGTTAAACGAGCCAAGACTGCTGGTATT 420
||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 361 AAGAAAATTATTCCATTTGCGGATATATCTTGTGTTAAACGAGCAAAGACTGCTGGTATT 420
Query 421 TTTCCTAATGCCATTGAGATTTTAGCTGGAGGGAAGAAGTACTTTTTTGCATCGTTTCTT 480
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 421 TTTCCCAATGCCATTGAGATTTTAGCTGGAGGGAAAAAGTACTTTTTTGCATCATTTCTT 480
Query 481 TCCCGCGATGAAGCTTTCAAGCTTATCCATGATGGATGGTTGGAATATGGTAGTGCTGTC 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 TCCCGTGATGAAGCTTTCAAGCTTATCCATGATGGATGGTTGGAATATGGTAGTCCTGTC 540
Query 541 AAATCAGAAGGCGAGATTCTGGTGACCGAACCGCAGGTAAGCGATGGAGTTGTTAAAAGG 600
||| ||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||
Sbjct 541 AAAGCAGAAGGCGAGATTCAGGTGACCGAACAGCAGGTAAATGATGGACTTGTTAAAAGG 600
Query 601 GCACGCAGTTCCATGGATTTGGCCAATGAACTAGATATTCCAGTAAGGGATGAAACTCTT 660
|||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 601 GCACTCAGTTCCATGGATTTGGCCAATGAACTAGATATTCCATTGCGGGATGAAAATCTT 660
Query 661 CATCTTTCCAGCAGTTCCAGTCTTCCTGTCATTAGTCAGAATGGCGTTCCACCTTCATCC 720
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CATCTTTCCGGCAGTTCCAGTCTTCCTGTCATTAGTCAGAATGGCCTTCCACCTTCATCC 720
Query 721 GTTCAGCGGCACGCTGAACCAGATGTAGATGTTGTGGCGGCCAATACTTTCAACTGGAAG 780
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GTTCAGCGGCATGCAGAACCAGATGTAGATGTCGTGGCGGCCAATACTTTCAACTGGAAG 780
Query 781 CCTGAAGATACAGATGCACCTAAATTGTCATCTGACTTTACAAAGGTAGCAGAGGCAAAG 840
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 CCTGAAGATATAGATGCACCTAAATTGTCATCTGATTTTACAAAGGTAGCAGAGGCAAAG 840
Query 841 TTTTCGATTCCAGTAGAAGAGTTCTTTAGATTGtttttttCAGATGGTGCTGTCAGTTTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTTTCGATTCCAGTAGAAGAGTTCTTTAGATTGTTTTTTTCAGATGGTGCTGTCAGTTTT 900
Query 901 GTTGAATCTTTCCATAAAAATTGTGGAGACAAAGAGTTTAGGTGTACCTCTTGGCAACCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTTGAATCTTTCCATAAAAATTGTGGAGACAAAGAGTTTAGGTGTACCTCTTGGCAACCT 960
Query 961 CATGAAAAGCTTGGACACACCCGCAATGTCTCATTTCAACATCCGATAAAAATTTATTTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CATGAAAAGCTTGGACACACCCGCAATGTCTCATTTCAACATCCGATAAAAATTTATTTT 1020
Query 1021 GGTGCAAAGTTTGGTGGCTGCCAGGAGTCACAGAAATTTCGGATGTACAGAAATAGCCAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 GGTGCAAAGTTTGGTGGCTGCCAGGAGTCACAGAAATTTCGGATGTACAGAGATAGCCAT 1080
Query 1081 CTGGTTATTGAAACATCACAGGAGATCAGCGATGTGCCTTATGCAGATTATTTTACGGTA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGGTTATTGAAACATCACAGGAGATCAGCGATGTGCCTTATGCAGATTATTTTACGGTA 1140
Query 1141 GAGGGAGTCTGGGACTTGAAAAGAGATTGCAGAGACTCGGTAGAAGGTTGTATATTGGAT 1200
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1141 GAGGGAGTCTGGGACTTGAAAAGAGATTGCAGAGACTCGATAGAAGGTTGTATATTGGAT 1200
Query 1201 GTTTATGTCAATGTGGCCTTCTCTAAAAGAACAGTGTGGAAAGGGAAAATAGTGCAGTCT 1260
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTTTATGTCAATGTGGCCTTCGCTAAAAGAACAGTGTGGAAAGGGAAAATAGTGCAGTCT 1260
Query 1261 ACTTTAGAAGAATGTAGAGAAGCTTATGCACATTGGATAAGAATGGCACATGAACTGTTG 1320
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ACTTTGGAAGAATGTAGAGAAGCTTATGCACATTGGATAAGAATGGCACATGAACTGTTG 1320
Query 1321 AAGCAGAAGAAGCTGGAGAACCAAGAAGGGAATAAGTTGATTGAGGATGGTGAACCGCTA 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1321 AAGCAGAAGAAGCTGGAGAACCAAGAAGGGAATAAGTTGATTGAGGATGGTGCACCACTA 1380
Query 1381 GCAGCAAGGGAAGAAAGAGTATCTGAATGTGACGAGGAGGGGAAGGTGGAAATGGTGGGC 1440
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1381 GCAGCAAAGGAAGAAAGAGTATCTGAATGTGAAGAGGAGGGGAAGGTGGAAATGGTGGGA 1440
Query 1441 GAAGGGGTAGTTaaaaaaaGCTTAAAGGAAGCATGGGTGAATCTGACTTCATTTGTGAAG 1500
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1441 GAAAGGGTAGTGAAAAAAAGCTTAAAGGAAGCATGGGTGAATCTGACATCATTTGTGAAG 1500
Query 1501 AGGCAAAGCGGGACAAGGCAGGTTATAGTATTAGCGTTTGCAGTAATCTTACTGATGCAG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AGGCAAAGCGGGACAAGGCAGGTTATAGTATTAGCGTTTGCAGTAATCTTACTGATGCAG 1560
Query 1561 GTGACGATAGTGGTGCTACTGAAAAAAGGAGGAGGGGGGCAAGTGGAGTATCATGAGAGG 1620
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1561 GTGACGATAGTGGTGCTACTGAAGAAAGGAGGAGGGGGGCAAGTGGAGTATCATGAGAGG 1620
Query 1621 TACGACGAGTACAGTGTAAACGGGGAGACTTTGGGGTGGTTAGAGAAGAGAATGCATTTC 1680
|||||||||||||||| ||| ||||||| | |||||||||| ||||||||||||||||||
Sbjct 1621 TACGACGAGTACAGTGGAAATGGGGAGAGTCTGGGGTGGTTGGAGAAGAGAATGCATTTC 1680
Query 1681 CTGAGGGAAGAGATGATGATGGTTGAGGATCGTTTGCAGAGGATGCGACAAGACCATGCC 1740
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1681 CTGAGGGAAGAGATGATGATGGTTGAGGATCGTTTGCAAAGGATGCGACAAGACCACGCT 1740
Query 1741 GCCTTGAAGGCTCAGTTCCACCATTTGGAACGCCTCCTCCGCCGCAACAAACAGTAAATT 1800
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1741 GCCTTGAAGGCTCAGTTCCACCATTTGGAACGCCTCGTCCGCCGCAACCAACAGTAAATT 1800
Query 1801 T-GCTACACCCTACTCTCTGTTTGTGCAGAATGCGGATGGATATATGCATGTATGTATGT 1859
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TTGTT-CACCCTACTCTCTGTTTGTGCAGAATGCGGATGGATATATGCATGTATGTATGT 1859
Query 1860 AATGTATTATCGGACGTTACTTTGCAAAGTTGTTGTTATACCTACCTACTCATATGAATA 1919
|||||||| ||||| | | || |||||||| | | |||||||||
Sbjct 1860 AATGTATTTTCGGA--T------G-----TT------ATACCTAC-T-C--ATATGAATA 1896
Query 1920 TGAGCAGAGACTCTGTTAAACGAAA-TGATGTAATCAATTGTATTCGTGT 1968
||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1897 TGAGCAGAGACTCTGTTAAACGAAAATGATTTAATCAATTGTATTCGTGT 1946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5