BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02130.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918732 jgi|Araly1|918732|scaffold_100013.1 1103 0.0
Ahg943767 jgi|Araly1|943767|scaffold_604311.1 676 0.0
> Ahg918732 jgi|Araly1|918732|scaffold_100013.1
Length=657
Score = 1103 bits (597), Expect = 0.0
Identities = 638/658 (97%), Gaps = 1/658 (0%)
Strand=Plus/Plus
Query 69 GCTCTTCCTCCCACAGATCGAAAACCATGAATCCTGAGTACGACTATCTTTTCAAGCTCC 128
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCTTCCTCCCACAGATCG-AAACCATGAATCCTGAGTACGACTATCTTTTCAAGCTCC 59
Query 129 TGCTTATCGGGGATTCTGGCGTAGGCAAGTCTTGTCTTCTTTTGAGATTCTCTGATGATT 188
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 TGCTTATCGGGGATTCTGGCGTAGGCAAGTCTTGTCTTCTTTTGAGATTTTCTGATGATT 119
Query 189 CTTATGTAGAAAGTTACATTAGCACTATTGGAGTCGATTTTAAAATTAGGACTGTGGAAC 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 CTTATGTAGAAAGTTACATTAGCACTATTGGAGTCGATTTTAAAATTAGGACTGTGGAGC 179
Query 249 AAGATGGCAAAACAATTAAGCTCCAAATTTGGGACACTGCTGGTCAAGAACGGTTCAGGA 308
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGATGGGAAAACGATTAAGCTCCAAATTTGGGACACTGCTGGTCAAGAACGGTTCAGGA 239
Query 309 CTATTACTAGCAGTTACTACCGTGGGGCACATGGAATTATTATTGTCTACGATGTCACAG 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTATTACTAGCAGTTACTACCGTGGGGCACATGGAATTATTATTGTCTACGATGTCACAG 299
Query 369 ATGAAGAAAGCTTCAATAATGTCAAGCAATGGTTGAGTGAAATTGATCGTTATGCTAGTG 428
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCAAGAAAGCTTCAATAATGTGAAGCAATGGTTGAGTGAAATTGATCGTTATGCTAGTG 359
Query 429 ACAATGTCAACAAACTCCTTGTTGGAAACAAGTCTGATCTTACTGAAAACAGAGCCATTC 488
|||| || ||||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 360 ACAACGTGAACAAACTCCTGGTTGGAAACAAGTCTGATCTTACTCAAAACAGAGCCGTTC 419
Query 489 CTTATGAAACTGCCAAGGCTTTTGCCGATGAAATCGGGATTCCTTTTATGGAGACTAGTG 548
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CTTATGAAACGGCCAAGGCTTTTGCCGATGAAATTGGGATTCCTTTTATGGAGACTAGTG 479
Query 549 CAAAAGATGCTACAAACGTAGAACAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAAAGATGCTACAAACGTAGAACAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGA 539
Query 609 GAATGGCTAGCCAACCAGCTGGGAATAATGCAAGACCACCGACCGTGCAGATCAGAGGAC 668
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 540 GAATGGCAAGCCAACCAGCTGGGAATAATGCAAGACCGCCGACAGTGCAGATCAGAGGAC 599
Query 669 AGCCTGTGGCACAGAAGAACGGCTGCTGCTCAACTTGATTGACGTGACCAGCCTAGCA 726
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 AGCCTATGGCACAGAAGAACGGCTGCTGCTCAACTTGATTGAATTGACCAGCCTAGCA 657
> Ahg943767 jgi|Araly1|943767|scaffold_604311.1
Length=652
Score = 676 bits (366), Expect = 0.0
Identities = 533/615 (87%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 95 ATGAATCCTGAGTACGACTATCTTTTCAAGCTCCTGCTTATCGGGGATTCTGGCGTAGGC 154
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 21 ATGAATCCCGAGTATGACTATCTTTTCAAGCTCCTGCTTATCGGAGATTCTGGTGTTGGG 80
Query 155 AAGTCTTGTCTTCTTTTGAGATTCT-CTGATGATTCTTATGTAGAAAGTTACATTAGCAC 213
|| || ||||| || || ||||| | |||||||||| || |||| |||||||| |||||
Sbjct 81 AAATCATGTCTACTCTTAAGATT-TGCTGATGATTCGTACATAGAGAGTTACATAAGCAC 139
Query 214 TATTGGAGTCGATTTTAAAATTAGGACTGTGGAACAAGATGGCAAAACAATTAAGCTCCA 273
||||||||| |||||||||||| ||||||| ||||||||||| || || ||||||||||
Sbjct 140 TATTGGAGTTGATTTTAAAATTCGGACTGTCGAACAAGATGGGAAGACGGTTAAGCTCCA 199
Query 274 AATTTGGGACACTGCTGGTCAAGAACGGTTCAGGACTATTACTAGCAGTTACTACCGTGG 333
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 200 AATTTGGGACACTGCTGGTCAAGAGCGGTTCAGGACAATTACCAGCAGTTACTACCGGGG 259
Query 334 GGCACATGGAATTATTATTGTCTACGATGTCACAGATGAAGAAAGCTTCAATAATGTCAA 393
|||||||||||| || ||||| || || |||||||| ||||| ||||||||||| || ||
Sbjct 260 GGCACATGGAATCATAATTGTTTATGACGTCACAGACGAAGAGAGCTTCAATAACGTGAA 319
Query 394 GCAATGGTTGAGTGAAATTGATCGTTATGCTAGTGACAATGTCAACAAACTCCTTG-TTG 452
||| |||||||||||||| ||||||||||| ||||||| || ||||||||| ||| |||
Sbjct 320 GCAGTGGTTGAGTGAAATCGATCGTTATGCGAGTGACAGCGTGAACAAACTC-TTGGTTG 378
Query 453 GAAACAAGTCTGATCTTACTGAAAACAGAGCCA-TTCCTTATGAAACTGCCAAGGCTTTT 511
| ||||| | |||||| ||| ||||||||| | |||| |||||||| ||||||||||||
Sbjct 379 GGAACAAATGTGATCTGGCTGCAAACAGAGC-AGTTCCATATGAAACAGCCAAGGCTTTT 437
Query 512 GCCGATGAAATCGGGATTCCTTTTATGGAGACTAGTGCAAAAGATGCTACAAACGTAGAA 571
|| |||||||| || ||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 438 GCGGATGAAATTGGAATTCCTTTTATGGAGACGAGTGCAAAAGATGCCACCAACGTGGAA 497
Query 572 CAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGAGAATGGCTAGCCAACCAGCTGGG 631
|||||||||||||| ||| | || ||||||||||| |||||||| || |||||||||| |
Sbjct 498 CAGGCTTTCATGGCCATGGCAGCGTCCATCAAAGACAGAATGGCAAGTCAACCAGCTGCG 557
Query 632 AATAATGCAAGACCACCGACCGTGCAGATCAGAGGACAGCCTGTGGCACAGAAGAACGGC 691
|| ||||||||||| || || |||||||||||||||||||| || | |||||||||||
Sbjct 558 AACAATGCAAGACCGCCAACGGTGCAGATCAGAGGACAGCCAGTTCCCCAGAAGAACGGT 617
Query 692 TGCTGCTCAACTTGA 706
|||||||| |||||
Sbjct 618 TGCTGCTCGTCTTGA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5