BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02140.1

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918728 jgi|Araly1|918728|scaffold_100009.1                        824    0.0  


> Ahg918728 jgi|Araly1|918728|scaffold_100009.1
Length=495

 Score =  824 bits (446),  Expect = 0.0
 Identities = 481/497 (97%), Gaps = 5/497 (1%)
 Strand=Plus/Plus

Query  35   AGAAAGaaaa-aaaGAGAAGGCATGGCCGCGGAAGAAGCGACGGAGTTCTACCTGAGATA  93
            ||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  2    AGAAA-AAAAGAGAGAGAAGTCATGGCCGCGGAAGAAGCGACGGAGTTCTACCTGAGGTA  60

Query  94   CTATGTCGGTCACAAAGGGAAATTTGGACACGAGTTCCTGGAGTTCGAGTTTAGAGAGGA  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTATGTCGGTCACAAAGGGAAATTTGGACACGAGTTCCTGGAGTTCGAGTTTAGAGAGGA  120

Query  154  CGGTAAGCTCCGTTACGCCAATAACTCTAACTACAAGAACGATACTATTATCCGCAAGGA  213
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  121  CGGTAAGCTCCGTTACGCCAACAACTCTAACTACAAGAACGATACTATTATCCGGAAGGA  180

Query  214  GGTATTTCTCACCCCCGCCGTGCTCAAGGAATGCAAGCGTATCGTCTCCGAGAGCGAGAT  273
            ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGTGTTTCTCACCCCCGCCGTTCTCAAGGAATGCAAGCGTATCGTCTCCGAGAGCGAGAT  240

Query  274  TCTGAAAGAAGACGATAACAATTGGCCGGAACCTGACCGTGTTGGAAAGCAAGAGCTCGA  333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  241  TCTGAAAGAAGACGATAACAATTGGCCGGAACCTGACCGTGTTGGAAAGCAAGAGCTTGA  300

Query  334  GATCGTCTTGGGTAATGAGCATATCTCATTCGCTACATCTAAGATTGGATCTCTTGTTGA  393
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  301  GATCGTCTTGGGTAATGAGCATATCTCATTCGCTACATCTAAAATTGGATCTCTTGTTGA  360

Query  394  TTG-CCAGAGCAGTAATGATCCTGAAGGACTTCGCATCTTCTACTATCTTGTTCAGGACT  452
             || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  361  -TGTCCAGAGCAGTAATGATCCTGAAGGGCTTCGCATCTTCTACTATCTTGTTCAGGACT  419

Query  453  TGAAATGTCTTGTTTTTTCGCTCATCTCTCTGCACTTCAAAATCAAGCCTATCTAGAGAA  512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  TGAAATGTCTTGTTTTTTCGCTCATCTCTCTGCACTTCAAAATCAAGCCTATCTAGAGAA  479

Query  513  GAAAATCAGTTTGTGAC  529
            |||| ||||| ||||||
Sbjct  480  GAAA-TCAGTGTGTGAC  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28973416920


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5