BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02145.3
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918727 jgi|Araly1|918727|scaffold_100008.1 2555 0.0
> Ahg918727 jgi|Araly1|918727|scaffold_100008.1
Length=1517
Score = 2555 bits (1383), Expect = 0.0
Identities = 1473/1517 (97%), Gaps = 4/1517 (0%)
Strand=Plus/Plus
Query 27 GATGCCGACGGATTCGAAAATGGCCAAGTTTCTTCAATCCTATGGATATGATTTGATTCT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GATGCCGACGGATTCGAAAATGGCCAAGTTTCTTCAATCCTATGGATATGATTTGATTCT 62
Query 87 GGGATCTGTAGCTGCAATCTATGTGGTCATGGCACCATATACTAAGGTGGAAGAGAGCTT 146
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGGATCTGTAGCTGCAATTTATGTGGTCATGGCACCATATACTAAGGTGGAAGAGAGCTT 122
Query 147 CAACGTTCAGTCAATGCACGACATTCTTTACCATCGCCATCATTTGGACTCTTATGATCA 206
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CAACGTACAGTCAATGCACGACATTCTTTACCATCGCCATCATTTGGACTCTTATGATCA 182
Query 207 TTTGGAGTTCCCCGGTGTTGTCCCTCGAACTTTTATTGGAGCCTTCATAGTCTCTGTTTT 266
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 183 TTTGGAGTTCCCTGGTGTTGTCCCTCGAACTTTTATTGGAGCCTTCATTGTCTCTGTTTT 242
Query 267 TGCATCACCTGTTGTATCAATTATCAGCTGCCTTGGCTTCCCCAAGGTTTATAGCCTTGT 326
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 243 TGCATCACCTGTTGTATCAATTATCAGCTGGCTTGGCTTCCCCAAGGTTTATAGCCTTGT 302
Query 327 TGCAGCTCGTTTGGTGTTGGGCTGCATCATATTGTCCACACTAAGATTTTTCCGGATTCA 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TGCAGCTCGTTTGGTGTTGGGCTGCATCATATTGTCCACACTAAGATTTTTCCGGATTCA 362
Query 387 GATaaaaaaaaaGTTTGGAAATCAAGTGGAAACTTTCTTTGTACTTTTCACCAGTCTTCA 446
||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GATAAGAAATAAGTTTGGACATCAAGTGGAAACTTTCTTTGTACTTTTCACCAGTCTTCA 422
Query 447 GTTTCATTTTCTTTTCTACTGCACTCGTCCTCTTCCTAATATTCTAGCTTTGGGATTAGT 506
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 423 GTTTCATTTTCTTTTCTACTGCACTCGTCCTCTACCTAATATTCTAGCTTTGGGATTAGT 482
Query 507 CAATCTGGCATATGGTAATTGGTTAAAGGGAAATTTTTATCCAGCTTTGAGTTTCCTGAT 566
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 483 TAATCTGGCATATGGTAATTGGTTAAAGGGAAACTTTTATCCAGCTTTGAGTTTCCTGAT 542
Query 567 TTTTGCCACTGTAATCTTCAGATGCGATACGATGTTACTGCTTGGGCCTATTGGTCTTGA 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 TTTTGCCACTGTAATCTTCAGATGCGATACGATGTTACTACTTGGGCCTATTGGTCTTGA 602
Query 627 ACTTTTATTGACCAAATCGATCTCCTTCTGGAAAGCACTTAAGTATTGTGTTGGAACCGC 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTTTTATTGACCAAATCGATCTCCTTCTGGAAAGCACTTAAGTATTGTGTTGGAACCGC 662
Query 687 TCTGTTGGCCGTAGGTCTTACCATTTTC-GTTGACTCTATCATGTGGAAGAAGTTTGTCT 745
||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct 663 TCTGTTGGCCGTAGGTCTTACCA-TTTCGGTTGACTCTATCATGTGGAAGAAGTGTGTCT 721
Query 746 GGCCAGAATTTGAAGTTTTCTGGTTTAACTCCATTCTAAACCGGAGTTCTGATTGGGGTA 805
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 722 GGCCAGAATTTGAAGTTTTCTGGTTTAACTCCATTCTAAACCGGAGTTCTGACTGGGGTA 781
Query 806 CACATTCCATACATTGGTACTTCACCTCAGCACTCCCACGGTCTTTACTTGTAGCTTATC 865
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 782 CACATTCCATACATTGGTACTTCACCTCGGCACTCCCACGGTCTTTACTTGTAGCTTATC 841
Query 866 CACTTTCATTGCTTGGTACTTTAGTTGACAGAAGGGTTCCATTCTTTATAGTTCCAGTTT 925
|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 842 CACTTTCATTGCTTGGTACTTTGGTTGACAGGAGGGTTCCATTCTTTATTCTTCCAGTTT 901
Query 926 TATCGTTCGTTATACTATACTCTAAACTTCCACACAAGGAACTCCGATTTATCATTAGTT 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TATCGTTCGTTATACTATACTCTAAACTTCCACACAAGGAACTCCGATTTATCATTAGTT 961
Query 986 CAGTGCCAATGTTCAACTTGTCTGCTGCAGTTGCTGCTAGCAGAATCTACAATAATAGGA 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CAGTGCCAATGTTCAACTTGTCTGCTGCAGTTGCTGCTAGCAGAATCTACAATAATAGGA 1021
Query 1046 AGAAAACGATTTGGAAACTGGTGAATATGGTTATGCTAGCGTTTTTTGCAATCAGTGCAG 1105
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AGAAAAAGATTTGGAAACTGGTGAATATGGTTATGCTAGCGTTTTTTGCAATCAGTGCAG 1081
Query 1106 GGTGCACGGTTGTAACATTCATGGCATCTTACTACAATTATCCTAGCGGCTATGCTTTAA 1165
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1082 GGTGCACGCTTGTAACATTCATGGCATCTTACTACAATTATCCTAGCGGCTATGCTTTGA 1141
Query 1166 AGCGCTTGCATCAGATTGGCCATCCTGCAAATGTAGCTGG-GGAAGAGTGGGTTCACATA 1224
| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1142 ATCGCTTGCATCAGATAGGCCATCCTGCAAATGTAGCTGGAGGA-GAGTGGGTTCACATA 1200
Query 1225 GACACTTTTGGTGCGATGAATGGAATATCTCGCTTTTGTGAAGATGATTTTCCGTGGAGA 1284
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1201 GACACTTTTGGTGCGATGAATGGAATATCTCGCTTTTGTGAAGATGCTTTTCCGTGGAGA 1260
Query 1285 TATTCCAAAGAAGAAGAGATAGTAGTGGAGGAGTTGCGAAACCGAAATTTCACGTACCTG 1344
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TACTCAAAAGAAGAAGAGATAGTAGTGGAGGAGTTGCGAAACCGAAATTTCACGTACCTG 1320
Query 1345 GTGAACGAGCATTCCTCTGTAGATGGATACAAGTGCTTATTTTATGAAGAAGGCTTTGAG 1404
|||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1321 GTGAACGAGCGCCCCTCTGTAGATGGATACAAGTGCTTGTTCTATGAAGAAGGCTTTGAG 1380
Query 1405 AGACTTGAGCTGCGGCGAGGTTTCCCTCCCATTGTCTTGGTaaaaaaaGCCAAAGTATAC 1464
|||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1381 AGACTTGAGCTGCGGCGAGGCTTCCCTCCCATTGTCCTGGTAAAAAAGGCCAAGGTATAC 1440
Query 1465 TTGCACCGGGAGATGAAGAAGGAAGATCCTTTTCATAAGAAATGGCCTGGATGTTAGGTA 1524
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1441 GTGCACCGGGATATGAAGAAGGAAGATCCTTTTCATAAGAAATGGCCTGGATGTTAGGCA 1500
Query 1525 ATCCTACAAATAGAGAC 1541
|||| ||||||||||||
Sbjct 1501 ATCCAACAAATAGAGAC 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5