BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02160.2

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470051 jgi|Araly1|470051|fgenesh2_kg.1__5__AT1G02160.2            592    1e-168


> Ahg470051 jgi|Araly1|470051|fgenesh2_kg.1__5__AT1G02160.2
Length=507

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 486/556 (87%), Gaps = 51/556 (9%)
 Strand=Plus/Plus

Query  1    CCATTAAGATATCTTCGCGGAATCGGTTGTgagagagagagaCGGTGATCGGGAAATGTC  60
            ||||||||||||||||||||||        |||||||||||||||||||||||||||| |
Sbjct  1    CCATTAAGATATCTTCGCGGAA--------GAGAGAGAGAGACGGTGATCGGGAAATGGC  52

Query  61   GACGAAAGGCGCGGCGGCGGCGTACCCTAGCGCGGCTCGGATATCTGATTCTCCATGTTA  120
            ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  53   GACGAAAGGCGAGGCGGCGGCATACCCTAGCGCGGCTCGGATATCTGACTCTCCATGTTA  112

Query  121  TCTTCAGTACTCTGCTTCTCTCAAATGTCTTGAAGAATTTGGATCAGACAAGAGTAAATG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113  TCTTCAGTACTCTGCTTCTCTCAAATGTCTTGAAGAATTTGGATCAGACAAGAGTAAATG  172

Query  181  CCAGGATCATTTTGATGTGTACAAGGAATGCAAGAAGAAAGAGGTTGTTGTTGTGAATGA  240
            |||||||||||||||||||||||||||||||||||||||||||| | |||  |||  |  
Sbjct  173  CCAGGATCATTTTGATGTGTACAAGGAATGCAAGAAGAAAGAGGCT-TTG--GTG--T--  225

Query  241  ATATTTAGGCTTTTGGCGTTTCCAACTTCTTTGCTGCTTTACCTATGTGTTATTTTGTTT  300
             | |  |  |||    | |  |    | ||  || |||| ||||||||||| ||||||||
Sbjct  226  -T-TCCAA-CTT----C-T--C----TGCT--GC-GCTT-ACCTATGTGTTCTTTTGTTT  267

Query  301  CTCAGAGGGAAGCTCGACTGGAACGCAATAAGACACGGTCGTTGTTCTCGTGAATGCAGA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  CTCAGAGGGAAGCTCGACTGGAACGCAATAAGACACGGTCGTTGTTCTCGTGAATGCAGA  327

Query  361  TCCTCGAATACCAATGATGTCTCAGAACATCACCTA-GCTAGTAGTATCCTGTTGTTTCA  419
            |||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct  328  TCCTCGAATACCAATGATGTCTCAGAACATCACCTAAGCTAGCAGTAGCCTGTTGTTTCA  387

Query  420  TTTGCAATGGCTGTGTTTGTATGATCTATCTAAGTAAACAAGTGGAAAGTGTTTGTTAAT  479
                || || ||||||||||     |||   | |||||||||||||||||||||||||||
Sbjct  388  ----CA-TG-CTGTGTTTGT-----CTA---A-GTAAACAAGTGGAAAGTGTTTGTTAAT  432

Query  480  GTTACTTTTTACTCCCCATTGGTGAATCATGG-TGTATACCTGTTAAACTTTGAGAGCAA  538
            |||||||||||| | |||||||||| |  ||| || ||||||||||||||||||||||||
Sbjct  433  GTTACTTTTTACGCTCCATTGGTGA-TGGTGGATGGATACCTGTTAAACTTTGAGAGCAA  491

Query  539  GTGGTTATTTATTTAG  554
            ||||||| ||| ||||
Sbjct  492  GTGGTTAGTTAGTTAG  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20718484827


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5