BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02170.1 Length=1336 Score E Sequences producing significant alignments: (Bits) Value Ahg909750 jgi|Araly1|909750|Al_scaffold_0001_4 771 0.0 Ahg921729 jgi|Araly1|921729|scaffold_103010.1 307 1e-82 > Ahg909750 jgi|Araly1|909750|Al_scaffold_0001_4 Length=936 Score = 771 bits (417), Expect = 0.0 Identities = 449/464 (97%), Gaps = 3/464 (1%) Strand=Plus/Plus Query 348 GCCGTGATCTGTGGCATCTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 407 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCCGTGATCTGTGGTATTTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 60 Query 408 GACGCCAAGTGCATGCGTCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 467 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACGCCAAGTGCATGCGCCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 120 Query 468 CTCATGCTTACCGAGGAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAACATGAGG 527 |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 CTCATGCTTACC---GAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAATATGAGA 177 Query 528 ATGGCATTGTATTGGCTCGTACAGGGATGCACAGCAGGCGACTCACTTGTCTTCCACTAC 587 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 178 ATGGCATTGTATTGGCTCGTACAGGGATGCACTGCAGGCGACTCCCTTGTCTTCCACTAC 237 Query 588 TCTGGTCATGGTTCGCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 647 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TCTGGTCATGGTTCTCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 297 Query 648 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 707 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 357 Query 708 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 417 Query 768 AGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAG 811 ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct 418 AGTGGCACCGTGCTTGATTTACCGTTCCTATGCAGAATGAACAG 461 Score = 431 bits (233), Expect = 7e-120 Identities = 270/286 (94%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 932 AGCGCTGTCGAAGATCACGTCTACGGGTGCTATGACTTTCTGTTTTATTCAAGCAATTGA 991 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 651 AGCGCTGTCAAAGATCACGTCTACGGGTGCTATGACGTTCTGTTTTATTCAAGCAATTGA 710 Query 992 ACGCAGCGCACAAGGCACAACCTATGGAAGCCTTCTGAATTCTATGCGCACCACAATAAG 1051 |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| Sbjct 711 ACGCAGCGCACAAGGCACGACCTATGGAAGCCTTTTGAATTCAATGCGCACCACAATAAG 770 Query 1052 GAATACAGGGAATGA---TGGTGGT---GGT---AGTGGTGGAGTTGTGACGACTGTGCT 1102 ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 771 GAATACAGGGAATGAGGGTGGTGGTATTGGTGGTAGTGGTGGAGTTGTGACGACTGTGCT 830 Query 1103 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 1162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 890 Query 1163 TGCTTGCCAAACATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 1208 |||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 891 TGCTTGTCAACCATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 936 Score = 202 bits (109), Expect = 6e-51 Identities = 117/121 (97%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 813 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAAAGGAACTGCT 872 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 493 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCTGGTTTGTGGAAAGGAACAGCT 552 Query 873 GGTGGAGAAGCCATTTCAATTAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 932 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 553 GGTGGAGAAGCCATATCAATCAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 612 Query 933 G 933 | Sbjct 613 G 613 > Ahg921729 jgi|Araly1|921729|scaffold_103010.1 Length=376 Score = 307 bits (166), Expect = 1e-82 Identities = 210/230 (91%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 243 GACCCTCGCACCGCCCCTCCTCCGCAACCTTCCTCCGCCCCTTCTCCGCCTCCCCAAATC 302 ||||||||| |||||| ||| || | ||||||||||||| |||||||||| |||||||| Sbjct 99 GACCCTCGCTCCGCCCTTCCACCTCCACCTTCCTCCGCCTCTTCTCCGCCGACCCAAATC 158 Query 303 CACGCGCCTCCCGGTCAGCTGCCTCACCCCCATGGCAGGAAGAGGGCCGTGATCTGTGGC 362 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 159 CACGCCCCTCCCGGTCAGCTACCTCACCCCCATGGCAGGAAGAGGGCCGTGATC--T--- 213 Query 363 ATCTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAACGACGCCAAGTGCATG 422 | | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 214 A--TGGTATCGTTTCTCTCACCACGAGCTCAAAGGCTGCATCAACGACGCCAAGTGCATG 271 Query 423 CGTCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATTCTCAT 472 |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 272 CGTCACCTTCTCATCAACAAATTCAAGTTCTCCCCAGATTCAATTCTCAT 321 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49979144187 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5