BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02170.1
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909750 jgi|Araly1|909750|Al_scaffold_0001_4 771 0.0
Ahg921729 jgi|Araly1|921729|scaffold_103010.1 307 1e-82
> Ahg909750 jgi|Araly1|909750|Al_scaffold_0001_4
Length=936
Score = 771 bits (417), Expect = 0.0
Identities = 449/464 (97%), Gaps = 3/464 (1%)
Strand=Plus/Plus
Query 348 GCCGTGATCTGTGGCATCTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 407
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCGTGATCTGTGGTATTTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAAC 60
Query 408 GACGCCAAGTGCATGCGTCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 467
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGCCAAGTGCATGCGCCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATT 120
Query 468 CTCATGCTTACCGAGGAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAACATGAGG 527
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CTCATGCTTACC---GAAGAAACTGATCCATATCGTATCCCGACCAAGCAAAATATGAGA 177
Query 528 ATGGCATTGTATTGGCTCGTACAGGGATGCACAGCAGGCGACTCACTTGTCTTCCACTAC 587
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 178 ATGGCATTGTATTGGCTCGTACAGGGATGCACTGCAGGCGACTCCCTTGTCTTCCACTAC 237
Query 588 TCTGGTCATGGTTCGCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 647
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTGGTCATGGTTCTCGTCAAAGAAACTACAACGGTGATGAAGTTGATGGCTATGATGAA 297
Query 648 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACACTCTGTCCTCTGGATTTTGAAACTCAGGGGATGATTGTAGACGATGAGATCAACGCA 357
Query 708 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACCATTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCAT 417
Query 768 AGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAG 811
||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 418 AGTGGCACCGTGCTTGATTTACCGTTCCTATGCAGAATGAACAG 461
Score = 431 bits (233), Expect = 7e-120
Identities = 270/286 (94%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 932 AGCGCTGTCGAAGATCACGTCTACGGGTGCTATGACTTTCTGTTTTATTCAAGCAATTGA 991
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 651 AGCGCTGTCAAAGATCACGTCTACGGGTGCTATGACGTTCTGTTTTATTCAAGCAATTGA 710
Query 992 ACGCAGCGCACAAGGCACAACCTATGGAAGCCTTCTGAATTCTATGCGCACCACAATAAG 1051
|||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 711 ACGCAGCGCACAAGGCACGACCTATGGAAGCCTTTTGAATTCAATGCGCACCACAATAAG 770
Query 1052 GAATACAGGGAATGA---TGGTGGT---GGT---AGTGGTGGAGTTGTGACGACTGTGCT 1102
||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 771 GAATACAGGGAATGAGGGTGGTGGTATTGGTGGTAGTGGTGGAGTTGTGACGACTGTGCT 830
Query 1103 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GAGCATGCTTCTGACAGGGGGAAGTGCGATTGGGGGATTAAGACAGGAGCCTCAACTGAC 890
Query 1163 TGCTTGCCAAACATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 1208
|||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 891 TGCTTGTCAACCATTCGATGTCTATGCAAAGCCTTTCACTCTCTAG 936
Score = 202 bits (109), Expect = 6e-51
Identities = 117/121 (97%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 813 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAAAGGAACTGCT 872
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 493 GCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCTGGTTTGTGGAAAGGAACAGCT 552
Query 873 GGTGGAGAAGCCATTTCAATTAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 932
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 553 GGTGGAGAAGCCATATCAATCAGTGGATGTGATGATGATCAGACTTCGGCCGACACATCA 612
Query 933 G 933
|
Sbjct 613 G 613
> Ahg921729 jgi|Araly1|921729|scaffold_103010.1
Length=376
Score = 307 bits (166), Expect = 1e-82
Identities = 210/230 (91%), Gaps = 7/230 (3%)
Strand=Plus/Plus
Query 243 GACCCTCGCACCGCCCCTCCTCCGCAACCTTCCTCCGCCCCTTCTCCGCCTCCCCAAATC 302
||||||||| |||||| ||| || | ||||||||||||| |||||||||| ||||||||
Sbjct 99 GACCCTCGCTCCGCCCTTCCACCTCCACCTTCCTCCGCCTCTTCTCCGCCGACCCAAATC 158
Query 303 CACGCGCCTCCCGGTCAGCTGCCTCACCCCCATGGCAGGAAGAGGGCCGTGATCTGTGGC 362
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 159 CACGCCCCTCCCGGTCAGCTACCTCACCCCCATGGCAGGAAGAGGGCCGTGATC--T--- 213
Query 363 ATCTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAACGACGCCAAGTGCATG 422
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 214 A--TGGTATCGTTTCTCTCACCACGAGCTCAAAGGCTGCATCAACGACGCCAAGTGCATG 271
Query 423 CGTCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATTCTCAT 472
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 272 CGTCACCTTCTCATCAACAAATTCAAGTTCTCCCCAGATTCAATTCTCAT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49979144187
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5