BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02180.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470049 jgi|Araly1|470049|fgenesh2_kg.1__3__AT1G02180.1 1260 0.0
> Ahg470049 jgi|Araly1|470049|fgenesh2_kg.1__3__AT1G02180.1
Length=830
Score = 1260 bits (682), Expect = 0.0
Identities = 784/833 (94%), Gaps = 8/833 (1%)
Strand=Plus/Plus
Query 90 AATCCGCCAGCTCGAGCTA-TTACGCTGGGAATTCAGAGGATAAAACAC--GATATGAAG 146
|||||||||||| |||| | |||||| |||||||||||||||||||||| || ||||||
Sbjct 1 AATCCGCCAGCTTGAGCAATTTACGCAGGGAATTCAGAGGATAAAACACAAGA-ATGAAG 59
Query 147 AACGAAATCAGCATTTTGGAGTTGATTTTACTGTTTCTGTCACTCTCATCAGTGCTAGCT 206
|||| ||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 60 AACGGAATTAGCTTTTTGAAGTCGATTTTACTGTTTCTATCACTCTCATCAGTGCTAGCT 119
Query 207 AGCTCCAAATTGCACGGAAACTCAGCTCATGAAATGGTGAGCATCTTGAACCAGAACAGA 266
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 120 AGCTCCAAATTGCACGGAAACCCAGCTCATGAAATGGTGAGCGTCTTGAACCAGAACAGA 179
Query 267 ACAGCTCGGAAACTAGGCAAACTAAATGAGAGTCCCGGTCTTGGCTGCATGGCCCTCCAG 326
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 ACAGCTCGGAAGCTCGGCAAACTAAATGAGAGTCCTGGTCTTGGCTGCATGGCCCTCCAG 239
Query 327 TATGTTGAGCTCTGCGAGGGGAATTGCAATGTCAACAACACTCTCAGCTGTGAACACCCT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 240 TATGTTGAGCTCTGCGAGGGGAATTGCAATGTCAACAACACTCTCAGCTGTGACCCCCCT 299
Query 387 GAAGACGACTTCACTCAGGTGTTTGCCCCAAACTGTGGTGTAGAACTCCCCACTTTTGGT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAGACGACTTCACTCAGGTGTTTGCCCCAAACTGTGGTGTAGAACTCCCCACTTTTGGT 359
Query 447 ACCATAACTGGCCATATCCTCGGCTGCAGCTCTAAGTATGCAGCACCAGAAGTCGCTTTC 506
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 360 ACCATAACTGGCCATATCCTCGGCTGCAGCTCAAAGTATGCAGCCCCAGAAGTCACTTTC 419
Query 507 TCAGACATTCTCTTTAGAGATAGCAGTGCGTTGTCGGTGCTCAGAAACAGGTCGCATACC 566
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 420 TCAGACATTCTCTTTAGAGATAACAAAGCGTTGTCGGTGCTCAGAAACAGGTCGCATACC 479
Query 567 GAGGTTGGAGTGGGAATGGCTAGGTTGCATAAAGGTACCTTCTTTTGGTGTCTTCTCTTT 626
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 480 GAGGTTGGAGTGGGAATGGCAAGGTTGCATAAAGGTACCTTCTTTTGGTGCCTTCTCTTT 539
Query 627 AGCGATGGTGTGAAAAACTCCTCCTTTG-TACTGGAAGATAACGGCCGGGGTATCAAACA 685
||||||||||||| |||| |||| |||| | |||||||||||||||||||| ||||||||
Sbjct 540 AGCGATGGTGTGACAAACACCTCATTTGCT-CTGGAAGATAACGGCCGGGGCATCAAACA 598
Query 686 AAGAACAGGCTGCTACAGCGGAAGTGCTTTTCCTTGCAGCAGCAACGCACACATGATTTG 745
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 599 AAGAAAAGGCTGCTACAGCGGAAGTGCTTTTCCTTGCAGCAGCAATGCATACATGATGTG 658
Query 746 TATGCGCCTTCTGAACAGCTTTCTGGGACTTCTCTTCTCTTCCTTCTGTCTATTCGAGAA 805
||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 659 TATGCGCCTACTGAACAGCTTTCTGGGACTTGTCTTGTCTTCCTTTTGTCTATTCGAGAA 718
Query 806 ACACCTTAAATTTTGATTCTGAAAGGCAAACCATTTGCT-GCTTGTTTGTAAAGACTAAA 864
||||||||| | ||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 719 ACACCTTAAGTCTTGATTCTGAAAGGCAAACCATTTGCTTG-TTGTCTGTAAAGACTAAA 777
Query 865 GAATAGATGGCACATTTTGTTATCGAATCACCAAATCAATGTTTTCCTTTATT 917
||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 778 GAATAGATGGCACATTTTGTTATTGAATCACCAAATCAATGTTTTCCTTGATT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5