BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02190.1
Length=2173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2 3055 0.0
Ahg321478 jgi|Araly1|321478|fgenesh1_pm.C_scaffold_4001535 553 2e-156
Ahg923354 jgi|Araly1|923354|scaffold_104635.1 414 1e-114
Ahg923356 jgi|Araly1|923356|scaffold_104637.1 117 4e-25
> Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2
Length=2131
Score = 3055 bits (1654), Expect = 0.0
Identities = 2022/2188 (92%), Gaps = 72/2188 (3%)
Strand=Plus/Plus
Query 1 ACATTATAAACAAGTACCTCCAAATTGCACTTCCTTCAAACTTATTCGACAGTAGACTAG 60
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ACATTCTAAACAAGTACCTCCAAATTGCACTTCCTTCAAACTTCTTCGACAGTAGACTAG 60
Query 61 CTCAAGTACCTTTGGATGGCGTCGAGGCCCGGAGCTCTTACGGAGTGGCCATGGAGTCCC 120
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAGTACCTTTGGATGGCATTGAGACCCGGAGCTCTTACGGAGTGGCCATGGAGTCCC 120
Query 121 CTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTCGTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTCGTAC 180
Query 181 GTGA---CGGCTGTGGATGAGGAGAAAGACCTCAGCAGACTTATGATAGTCGTGTTGATG 237
|||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |
Sbjct 181 GTGACGGCGGCTGTGGATGAGGAGAAAGACCTCACCAGACTGATGATAGTCGTGTTGACG 240
Query 238 CTGTGGAGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCGCCAGAGGACGGCTAAG 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGTGGCGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCGCCAGAGGACGGCTAAG 300
Query 298 GGAACGAACAAGATCGTGGACAAGCCCATTGAGTTTGAGCAAGTGGACCGAGAGCGCACT 357
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||
Sbjct 301 GGAACGAACAAGATCGTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCGCTCT 360
Query 358 TGGGACGACCAAGTCATCTTCAACACTCTCCTCATGTATCTCGCAAACATCAAGCTCCCA 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGGACGACCAAATCATCTTCAACACTCTCCTCATGTATCTCGCAAACATCAAGCTCCCA 420
Query 418 GGCGCCTCCCACCTTCCCCCATGGAGGCTAGACGGGGCCATCCTCATGGCTCTACTTCAC 477
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 421 GGCGCCTCCCACCTTCCCCCCTGGAGACTAGATGGAGCCATCCTCATGGCTCTACTTCAC 480
Query 478 GCTGGTCCCGTCGAGTTTCTCTACTACTGGTTTCACAGAGCTCTCCACCACCATTTCCTC 537
|| | | ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GC---T---G--GAGTTCCTCTACTACTGGTTCCACAGAGCTCTCCACCACCATTTCCTC 532
Query 538 TACTCTCGCTACCATTCTCACCACCACTCCTCCATTGTCACCGAGCCCATCACGTCTGTG 597
|||||||||||||||||||||||||| | ||| | |||| ||||||
Sbjct 533 TACTCTCGCTACCATTCTCACCACCA-T--TCC----T--------CCAT----TCTGTG 573
Query 598 GTGCACCCCTTCGCCGAGCACATCGCCTACACACTACTCTTTGCCATACCTATGGTAACG 657
||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||
Sbjct 574 GTGCACCCCTTCGCCGAACACATCGCCTACTCACTACTCTTTGCCATACCCATGGTAACG 633
Query 658 GCGTCCCTGTGTGGGATCCTCTCCATCGTTTCCATCATGGGATACATTACTTACATTGAC 717
|||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 634 GCGTCCCTGTGTGGGATCCTCTCCATTGTTTCCATCATTGCATACATTACTTACATTGAC 693
Query 718 TTCATGAACAACATGGGACATTGCAACTTCGAGCTTTTCCCTAAGCGTCTCTTCCACCTC 777
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 694 TTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCCCTAAGCGTCTCTTCCACCTC 753
Query 778 TTCCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCGTTTCACTCGCTCCACCACACGCAG 837
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 754 TTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGTTTCACTCGCTCCACCACACGCAG 813
Query 838 TTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACTTCATCTACGGGACGACTGAT 897
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 814 TTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACTACATCTACGGGACGACTGAT 873
Query 898 AATTTGACCGACTCACTATACGAGAGGTCGTTGGAGATAGAGGAAGAATCACCCGACGTC 957
||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 874 AATTTGACCGAGTCATTATACGAGAGGTCGTTGGAGAGAGAGGAAGAATCACCCGACATC 933
Query 958 ATCCACCTCACTCACCTCACCACACACAACTCCATCTACCAAATGCGCCTTGGTTTCCCG 1017
|| |||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||
Sbjct 934 ATTCACCTCACTCACCTTACCACACGCGATTCCATCTACCAAATGCGCCTTGGTTTCCCG 993
Query 1018 TCCCTCTCCTCTTGCCCCTTGTGGTCTCGACCCCCATGGTACCTCACATGCTTCATGTGG 1077
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 994 TCCCTCTCCTCTTGCCCCTTATGGTCTCGATCCCCATGGTACCTCACATGCTTCATGTGG 1053
Query 1078 CCCTTCACTCTCCTCTGCTCATTTGCCCTCACTTCAGCTATC-CCTTTGCGCACCTTTGT 1136
||||||||||||||||||||||||| ||||| || ||| || || | ||||||||||||
Sbjct 1054 CCCTTCACTCTCCTCTGCTCATTTGTGCTCACCTCCGCTCTCTCC-TCGCGCACCTTTGT 1112
Query 1137 CTTTGAGCGAAACCGTCTCCGTGACCTCACCGTTCACTCTCACCTCCTTCCCAAGTTTTC 1196
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1113 CTTTGAGCGAAACCGTCTCCGTGATCTCACCCTTCACTCTCACCTCCTTCCCAA------ 1166
Query 1197 CTTTCACTATAAATCACAGCGCCACCATGAGTCCATCAACACTATCATAGAGGAAGCTAT 1256
|||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1167 CTTTTACTATAAATCACTGCGCCACCATGAGTCCATCAACAATATCATAGAGGAAGTTAT 1226
Query 1257 CCTTGAAGCAGATGAAAAGGGTGTGAAAGTAATGAGTCTTGGCCTGATGAACAATAGGGA 1316
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1227 TCTTGAAGCAGATGAAAAGGGTGTGAAAGTAATCAGTCTTGGCCTGATGAACAATAGGGA 1286
Query 1317 GGAACTAAACGGGTCTGGAGAAATGTACGTGCAAAAGTATCCGAAGTTGAAGATAAGACT 1376
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1287 GGAACTAAACAAGTCTGGAGAAATCTACGTGCAAAAGTATCCGAAGTTGAAGATGAGACT 1346
Query 1377 AGTGGACGGGAGCAGCATGGCAGCTACGGTGGTTATCAACAATATTCCAAAGGAAGCCAC 1436
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1347 AGTGGACGGGAGCAGCATGGCAGCTGCGGTGGTTATCAACAATATTCCAAAGGAAACCAC 1406
Query 1437 GGAAATTGTCTTTAGAGGAAATCTCACAAAGGTGGCTTCGGCTGTTGTCTTTGCTCTGTG 1496
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1407 GGAAATTGTCTTTAGAGGAAATCTCACAAAGGTCGCTTCGGCTGTTGTCTTTGCTCTGTG 1466
Query 1497 CCAAAAGGGCGTCAAGGTGGTCGTGTTACGCGAGGAGGAACACAGCAAACTCATCAAATC 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 CCAAAAGGGCGTCAAGGTGGTCGTGTTACGCGAGGAGGAACACAGCAAACTCATCAAATC 1526
Query 1557 TGGGGTTGACAAGAATCTGGTACTGTCTACAAGCAATAGTTATTACTCCCCAAAGGTGTG 1616
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1527 TGGGGTTGGCAAGAATCTGGTACTGTCTACAAGCAATAGTTATTACTCCCCAACGGTGTG 1586
Query 1617 GTTGGTGGGGGATGGAATAGAGAACGAAGAGCAGATGAAAGCAAAAGAAGGAACCCTCTT 1676
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1587 GTTGGTGGGGGATGGAATAGAGAACGAAGAGCAGATGAAGGCAAAAGAAGGAACCCTCTT 1646
Query 1677 TGTTCCCTTTTCTCACTTTCCGCCCAACAAACTCCGCAAGGACTGTTTCTACCAGTCCAC 1736
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1647 TGTTCCCTTTTCTCACTTTCCGCCCAACAAACTCCGCAAGGACTGTTTCTACGAGTCCAC 1706
Query 1737 TCCAGCTATGCGTGTTCCCAAGTCTGCCCAAAACATCGACTCCTGTGAGAACTGGCTGGG 1796
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 1707 TCCAGCTATGCGTGTTCCCAACTCTGCCCAAATCATCGACTCATGTGAGAACTGGCTGGG 1766
Query 1797 GAGGAGGGTGATGAGTGCATGGAAAATAGGAGGTATAGTGCATGCACTTGAGGGTTGGGA 1856
|||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1767 AAGGAGGGTGATGAGTGCATGGAAAGTAGGAGGTATAGTGCATGCCCTTGAAGGTTGGGA 1826
Query 1857 GGAGCATGACTGCGGCAACACTTGCAACGTCCTCCGTCTCCACGCCATATGGGAAGCTGC 1916
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1827 GGAGCATGACTGCGGCAACACTTGCAACGTCCTCCGTCTCCACGCCATCTGGGAAGCTGC 1886
Query 1917 TCTTCGCCATGATTTCCAACCTCTCC--CACC----ATCTCCTCTATGAGCTTTTTTCAT 1970
|||||||||||||||||||||||||| | || ||||| ||||||||||||| |||
Sbjct 1887 TCTTCGCCATGATTTCCAACCTCTCCGTCTCCCGCCATCTCATCTATGAGCTTTT--CAT 1944
Query 1971 ATTCATACATCTATGTCCCCTTTCT-TGATTATATCTACTTCCCTTCCATCATTGTTTGC 2029
||||||| ||||| ||||||| | || || | | | | || ||||| ||||
Sbjct 1945 ATTCATA-ATCTAC-TCCCCTTCCAGTG-TT-TG-C--CGT---TT--ATCAT-GTTT-- 1989
Query 2030 TGTTTACTATGTTTTTCTATCGACAA-TATATAAG-TAC-CCTTGTTACCCTTGGTGCCA 2086
| | || || | | | ||| | || || || | ||| ||||||||| ||||||||||
Sbjct 1990 T-TCTA-TA-GACTATATATATATAAGTAC-TA-GCTACACCTTGTTACGCTTGGTGCCA 2044
Query 2087 CGTGCTTCATATATGTTAGAAAGGGCaaaaaaaTTCGTCGTATGATATGCTTAGTTAAAT 2146
||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct 2045 CGTGCTTCATATATGTTAGAAAGGGCAAACAATTTCGTCGTTTGAAATGCTTAGTTAAAT 2104
Query 2147 TTT-ATAAAACTCAATAAAAATCTTCAG 2173
||| | ||||||||||||||||||||||
Sbjct 2105 TTTGA-AAAACTCAATAAAAATCTTCAG 2131
> Ahg321478 jgi|Araly1|321478|fgenesh1_pm.C_scaffold_4001535
Length=1866
Score = 553 bits (299), Expect = 2e-156
Identities = 1278/1728 (74%), Gaps = 157/1728 (9%)
Strand=Plus/Plus
Query 216 ACTTATGATAGTCGTGTTGATGCTGTGGAGAATAGTTCACAGCCAGATATGGATCAGCGT 275
|||||||||||| | ||| | ||||| | || ||||| ||||| |||||||| || |
Sbjct 129 ACTTATGATAGTGGCATTGGCGGTGTGGCGGATTGTTCATAGCCAAATATGGATAAGTTT 188
Query 276 GTCTCG---CCAGAGGACGGCTAAGGGAACGAA-CAAGATCGTGGACAAGCCCATTGAGT 331
|| || ||| | || || || ||||| || | ||||||| ||||| |||| ||||
Sbjct 189 CTCCCGTTACCA-A--ACCGCAAAAGGAACCAAGC-GGATCGTGAACAAGTCCATAGAGT 244
Query 332 TTGAGCAAGTGGACCGAGAGCGCACTTGGGACGACCAAG-TCATCTTCAACACTCTC-CT 389
|||| ||||| |||||||| | || |||||||| | || ||||||||||| ||||| |
Sbjct 245 TTGATCAAGTTGACCGAGAACAAACCTGGGACGATC-AGATCATCTTCAACTCTCTCATT 303
Query 390 CATGTATC-T--CGCAAACAT-CAAGCTCCCAGGCG-CC--TCCCACCTTCCCCCATGGA 442
| | || | | | ||||| | | | || ||| | || | ||| |||| | |||
Sbjct 304 C-TTTA-CTTAAC-CAAAC-TGTACG-TCTTAGG-GACCAATACCA-TTTCCTTC-TGGC 355
Query 443 G-GCTAGACGGGGCCATCCTCA-TGGCTCTACTTCACGCTGGTCCCGTCGAGTTTC-TCT 499
| | || || || || | | ||||| || || |||||||| |||||| ||| |||
Sbjct 356 GAAC-CGATGGATTGAT-CTTAGTCGCTCTCCTCCATGCTGGTCCGGTCGAG-TTCATCT 412
Query 500 ACTACTGGTTTCACAGAGCTCTCCACCACCATTTCCTCTACTCTCGCTACCATTCTCACC 559
|||| ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 413 ACTATTGGTTCCACCGAGCACTTCACCACCACTTCCTCTACTCTCGCTACCATTCTCACC 472
Query 560 ACCACTCCTCCATTGTCACCGAGCCCATCACGTCTGTGGTGCACCCCTTCGCCGAGCACA 619
||||||| ||||||||||||||||| ||||| || || || || || || || |||||||
Sbjct 473 ACCACTCTTCCATTGTCACCGAGCCAATCACTTCGGTAGTACATCCGTTTGCGGAGCACA 532
Query 620 TCGCCTACACACTACTCTTTGC-CATACCTATGGTAACGGCGTCCCTGTGTGGGATCC-T 677
| | || || || |||| | | ||||| | || | | | || || || | | |
Sbjct 533 TTGGATATACGTTAATCTTGGGGC-TACCTCTAACAATGACTTTGCTATGCGGCA-CGGT 590
Query 678 CTC--CATCGTTTCCAT-CATGGGATACATT-A-CTTACATTGACTTCATGAACAACATG 732
||| | | || ||||| | | ||| || | ||||||| || || |||||||| |||
Sbjct 591 CTCGGC-T-GTCTCCATTC-TC--ATATATGCAACTTACATAGATTTTATGAACAATATG 645
Query 733 GGACATTGCAACTTCGAGCTT-TTCCCTA-AGCGTCTCTTCCACC-TCTTCCCTCCCCTC 789
|| || |||||||||||||| |||| | | | ||||||| || | || ||||| ||
Sbjct 646 GGTCACTGCAACTTCGAGCTCATTCCG-AGATC-TCTCTTCT-CCATTTTACCTCCTCTT 702
Query 790 AAGTTCCTCTGTTACACCCCCTCGTTTCACTCGCTCCACCACACGCAGTTCCGGACCAAC 849
|||||||| || ||||| |||||||||||||||||||||||||| || ||| |||| |||
Sbjct 703 AAGTTCCTTTGCTACACTCCCTCGTTTCACTCGCTCCACCACACACAATTCAGGACAAAC 762
Query 850 TACTCTCTGTTCATGCCAATATACGACTTCATCTACGGGACGACTGATAATTTG-ACCGA 908
|||||||| ||||||||||| ||||||| |||||| ||||| || || | | | | ||
Sbjct 763 TACTCTCTATTCATGCCAATGTACGACTACATCTATGGGACTACCGACGAGT-GCAGTGA 821
Query 909 CTCACTATACGAGAGGTCGTTGGAGATAGAGGAAGAATCACCC-GACGTC-ATCCACCTC 966
|||| | ||||| | |||||||||| ||| ||||| | | || |||| | || || ||
Sbjct 822 CTCATTGTACGAAACATCGTTGGAGAAAGAAGAAGA-TAAGCCTGACG-CGATTCATCTG 879
Query 967 ACTCACCTCACCA-CACACAACTCCATCTACCAAATGCGCCTTGGTTTCCCGTCCCTCTC 1025
|| || || || | ||| |||| || ||||| | || || || || | ||||||||
Sbjct 880 ACCCATCTAAC-ATCACTGGACTCTATTTACCATCTCCGGCTCGGCTTGGCTTCCCTCTC 938
Query 1026 CTCTTGC-CCCTTGTGGTCTCGACCCCCATGGTACCTCACATGCTTCATG-TG--GCCCT 1081
|| | || ||| | |||| ||| || ||||| | | | ||||| || |||||
Sbjct 939 CT-T-GCACCC--GC--TCTCTTCCCAG-TGTTACCT-AT-T-CATCATGATGAAGCCCT 988
Query 1082 TCACTC-TC-C-TCTGCT-CATTTGCCCTCACTTCAGCTATCCCTTTGCGCA-CCTTTGT 1136
|||||| | | ||| || |||| | |||||||| | || |||| | || |||| ||
Sbjct 989 TCACTCATATCATCTCCTTCATT--C--TCACTTCA--T-TCTCTTTTC-CAACCTTCGT 1040
Query 1137 CTTTGAGCGAAACCGTCT-CCGTGACCTCAC-CGTTCACTCTCACCTCCTTCCCAAGTTT 1194
||| ||| ||||||| || |||||| ||||| | ||||||| ||||| |||||||||||
Sbjct 1041 CTTCGAGAGAAACCG-CTTCCGTGATCTCACAC-TTCACTCCCACCTTCTTCCCAAGTTC 1098
Query 1195 TCCTTTCACTATAAATCACAGC-GCCACCATGAGTCCATCAACACTATCATAGAGGAAGC 1253
|||| ||| || | || |||| || | | || | ||||||| || ||||||| ||
Sbjct 1099 TCCTCTCATTACATGTCGCAGCAGC-AGAAAGAATGTATCAACAAAATGATAGAGGCGGC 1157
Query 1254 TATCCTTGAAGCAGATGAA-AAGGGTGTGAAAGTAATGAGTCTTGGC-CTGAT-GAACAA 1310
||| |||||||| || ||| ||||||||||||||||||||| |||| || || |||| |
Sbjct 1158 TATTCTTGAAGCGGA-GAAGAAGGGTGTGAAAGTAATGAGT-TTGGGGCT-ATTGAACCA 1214
Query 1311 TAGGGAG--GAACTAAACGGGTCTGGAGAAATGTACGTGCAA-AAGTATCCGAAGTTGAA 1367
||||| ||| |||| |||| |||||||||||||||| | ||| |||| ||| | ||
Sbjct 1215 --GGGAGAAGAATTAAATGGGTATGGAGAAATGTACGTG-AGGAAGCATCCAAAGCTAAA 1271
Query 1368 GATAAG-ACTAGTGGACGGGAGCAG-CATGGCAGCT-ACGGTGGTTAT-CAACAATATTC 1423
|||||| | |||||||||| ||||| | || ||||| | |||||| | || | ||||
Sbjct 1272 GATAAGGA-TAGTGGACGGAAGCAGTCTTG-CAGCTGA-GGTGGTGCTTCAT-AGCATTC 1327
Query 1424 CAAA-GGAAGCCA-CGGAAATTGTCTTTAGAGG--AAATCTCACAAAGGTGGCTTCG-GC 1478
| || | ||| || | || |||||||||| ||||| || |||| || || || ||
Sbjct 1328 CTGTTGGGA-CCAACG-AGGTTCTCTTTAGAGGCCAAATCACA-AAAGTTG-CT-CGTGC 1382
Query 1479 TGTTGTCTTTGCTCTGTGCCAAAAGGGCGTCAAGGTGGTCGTGTTACGCGAGGAGGAACA 1538
|||||||| |||| |||||||| | | |||||||| | || |||||| |||| || ||
Sbjct 1383 CATTGTCTTTTCTCTTTGCCAAAATGCCATCAAGGTGATGGTCTTACGCAAGGAAGAGCA 1442
Query 1539 CAGCAAACTCATCAAAT-CTGGG--G-T--T-GACAAG-AA--TCTGGTACTGTCTACAA 1588
|| || | ||| || || | | | | ||| || |||||| || | ||||
Sbjct 1443 TTCCATGTTCGCCGAATTCTTGGACGATAATTGT-AAGGAAAATCTGGTGCT--C-ACAA 1498
Query 1589 GCAATAGTTATTACTCCCCAAAGGTGTGGTTGGTGGGGGATGGAATAGAG-AACGAAGAG 1647
|||| | | || ||| || | | ||||||||||| ||||| || || || |||||
Sbjct 1499 CCAAT--T-ACTA-TCC--AATGATTTGGTTGGTGGGAGATGGGCTA-AGCAAAAAAGAG 1551
Query 1648 CAGATGAAAGCAAAAGAAGGAACCCTCTTTGTTCCCTTT-TCTCACTTTCCGCCCAACAA 1706
|||| || ||||||||| |||| |||||| |||| ||| ||||| ||||| || | |||
Sbjct 1552 CAGAAGATGGCAAAAGAAAGAACTCTCTTTCTTCC-TTTCTCTCAATTTCCTCCTACCAA 1610
Query 1707 ACTCCGCAAGGACTG-TTTCTACCAGT-CCACTCCAGCTATGCGTGTTCCCA-A-GTCTG 1762
||| || || ||||| ||| ||||| | ||||||| |||||| | |||| | | |||
Sbjct 1611 ACTACGAAAAGACTGCTTT-TACCA-TACCACTCCGGCTATGA-TCATCCCGCACG-CTG 1666
Query 1763 CCCAAAACATCGACTCCTGTGAGAACTGGCTGGGGAGGAGGGTGATGAGTGCATGGAAAA 1822
|||| ||||| || || |||||||| |||||||||||||| |||||||| ||||||| |
Sbjct 1667 CCCATAACATTGATTCTTGTGAGAATTGGCTGGGGAGGAGAGTGATGAGCGCATGGAGAG 1726
Query 1823 TAGGAGGTATAGTGCATGCACTTGA-GGGTTGGGAGGAGCATGACTGC 1869
| || || ||||| ||||| ||||| |||| ||||||| || || |||
Sbjct 1727 TTGGTGGGATAGTACATGCGCTTGAAGGGT-GGGAGGAACACGAGTGC 1773
> Ahg923354 jgi|Araly1|923354|scaffold_104635.1
Length=653
Score = 414 bits (224), Expect = 1e-114
Identities = 382/452 (85%), Gaps = 35/452 (8%)
Strand=Plus/Plus
Query 288 GACGGCTAAGGGAACGAACAAGATCGTGGACAAGCCCATTGAGTTTGAGCAAGTGGACCG 347
|||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 173 GACGGCCAAGGGAAGGAAGAAGATCGTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCG 232
Query 348 AGAGCGCACTTGGGACGACCAAGTCATCTTCAACACTCTCCTCATGTATCTCG-CAAACA 406
|| | || |||||||||||||| ||||||||||||| ||| |||||| ||| | | ||||
Sbjct 233 AG-G-GC-CTTGGGACGACCAAATCATCTTCAACACGCTCTTCATGTTTCTTGTC-AACA 288
Query 407 TCAAGCTCCCAGGC-GCCTCCCACCT-TCCC-C-CATGGAGGCTAGACGGGGCCATCCTC 462
||| ||| ||||| | || || | | |||| | | ||||| |||||||| ||||| |||
Sbjct 289 ACAAACTCTCAGGCTG-CT-CC-CGTATCCCTCTC-TGGAGACTAGACGGAGCCATTCTC 344
Query 463 ATG-G-C-T--C--TACTTCACGCTGGTCCCGTCGAGTTTC-TCTACTACTGGTTTCACA 514
||| | | | | ||||||| |||||||||||| || ||| | ||||| ||||| ||||
Sbjct 345 ATGAGTCATGACTATACTTCATGCTGGTCCCGTCCAG-TTCTTATACTAGTGGTTCCACA 403
Query 515 GAGCTCTCCACCACCATTTCC---TCTACTCTCGCTACCATTCTCACCACCACTCCTCCA 571
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 404 GAGCTCTCCACCAGCACTTCCTGATCTACTCTCGCTACCATTCTCACCACCACTCCTCCA 463
Query 572 TTGTCACCGAGCCCATCACG--T---C---TGTGGTGCACCCCTTCGCCGAGCACATCGC 623
| ||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 464 TCGTCACCGAGCCCATCACAACTTGGCAGCTGTGGTGCACCCCTTCGCCGAGCACATCGC 523
Query 624 CTACACACTACTCTTT-GCCATACCTATGGTAACGGCGTCCCTGTGTGGGATCCTCTCCA 682
|||| ||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 524 CTACTCACTACT-TTTCGCCATACTTATAGTAACGGCGTCCCTGTGTGGGATCCTCTCCA 582
Query 683 TCGTTTCCATCATGGGATACATTACTTACATT 714
| ||| || || | | |||| |||||||||||
Sbjct 583 TTGTTACCTTCGTTGCATACGTTACTTACATT 614
Score = 195 bits (105), Expect = 2e-48
Identities = 150/172 (87%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 57 CTAGCTCAAGTACCTTTGGATGGCGTCGAGGCCCGGAGCTCTTACGGAGTGGCCATGGAG 116
||| ||||| ||||||||||||||||| ||| | |||| ||| ||||| |||||||||||
Sbjct 2 CTACCTCAAATACCTTTGGATGGCGTCAAGGTCGGGAGTTCTAACGGAATGGCCATGGAG 61
Query 117 TCCCCTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTC 176
|||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || ||
Sbjct 62 TCCCCTTGGTGGCTTCAAGTACCTCTTGGTGGCCCCGTTGAAGATGGCAAGCATACATTC 121
Query 177 GTACGTGACGGCTGTGGATGAGGAGAAAGACCTCAGC-AGACTTATGATAGT 227
||||||||| |||| ||| |||||||| || || ||| ||||| ||||||||
Sbjct 122 GTACGTGACAGCTGAGGAGGAGGAGAAGGAGCT-AGCGAGACTGATGATAGT 172
> Ahg923356 jgi|Araly1|923356|scaffold_104637.1
Length=373
Score = 117 bits (63), Expect = 4e-25
Identities = 78/85 (92%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1228 TCCATCA-ACACTATCATAGAGGAAGCTATCCTTGAAGCAGATGAAAAGGGTGTGAAAGT 1286
|||| || ||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 53 TCCACCACACAAAATCATAGAGGTAGCTATCCTTGAAGCAGATGAAAAGGGTGTGAGAGT 112
Query 1287 AATGAGTCTTGGCCTGATGAACAAT 1311
||||||||||||||||||||| |||
Sbjct 113 AATGAGTCTTGGCCTGATGAATAAT 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81779756015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5