BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02205.3
Length=2067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918720 jgi|Araly1|918720|scaffold_100001.1 2073 0.0
Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2 222 7e-57
> Ahg918720 jgi|Araly1|918720|scaffold_100001.1
Length=1339
Score = 2073 bits (1122), Expect = 0.0
Identities = 1203/1243 (97%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 51 ATATTACATTCGACGGTATAATGGCCACAAAACCAGGAGTCCTCACCGATTGGCCTTGGA 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATTACATTCGACGGTATAATGGCCACAAAACCAGGAGTCCTCACCGATTGGCCTTGGA 60
Query 111 CACCCCTCGGAAGTTTCAAGTACATCGTAATAGCACCATGGGCTGTCCATAGCACATACA 170
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACCCCTCGGGAGTTTCAAGTACATCGTAATAGCACCATGGGCTGTCCATAGCACATACA 120
Query 171 GGTTTGTGACAGATGATCCAGAGAAGAGGGATCTCGGGTACTTCCTTGTGTTCCCATTCT 230
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||
Sbjct 121 GGTTTGTGACAGATGATCCGGAGAAGAGGGATCTCGGGTACTCCCTTGTATTCCCCTTCT 180
Query 231 TGCTCTTCAGAATTCTGCACAACCAGGTTTGGATCTCTCTGTCCCGTTACTATACGTCCT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCTCTTCAGAATTCTGCACAACCAGGTTTGGATCTCTCTGTCCCGTTACTATACGTCCT 240
Query 291 CGGGAAAGAGACGCATCGTCGACAAGGGAATCGACTTCAATCAGGTCGACAGGGAGACCA 350
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGGAAAGAGGCGCATCGTCGACAAGGGAATCGACTTCAATCAGGTCGACAGGGAGACCA 300
Query 351 ACTGGGATGACCAAATATTGTTCAACGGAGTGCTGTTCTATATAGGCATCAACCTATTGC 410
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 301 ACTGGGATGACCAAATATTGTTCAACGGAGTGCTGTTCTATACAGGCATCTGCCTGTTGC 360
Query 411 CGGAGGCCAAACAACTTCCCTGGTGGAGAACTGACGGAGTGTTGATGGCAGCGCTTATTC 470
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGGAGGCCAAGCAACTTCCCTGGTGGAGAACTGACGGAGTGTTGATGGCAGCGCTTATTC 420
Query 471 ACACCGGACCGGTGGAGTTCCTCTATTATTGGCTCCACAAAGCTCTCCACCATCACTTTC 530
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGCCGGACCGGTGGAGTTCCTCTATTATTGGCTCCACAAAGCTCTCCACCATCACTTTC 480
Query 531 TTTATTCCCGCTACCATTCCCACCACCACTCCTCTATCGTCACTGAGCCCATCACTTCGG 590
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTATTCCCGTTACCATTCCCACCACCACTCCTCTATCGTCACTGAGCCCATCACTTCGG 540
Query 591 TGATACATCCGTTTGCGGAGCACATAGCATACTTCATCCTCTTCGCGATACCACTACTTA 650
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 541 TGATACATCCGTTTGCGGAGCACATAGCATACTTCGTGCTCTTCGCGATACCGCTACTTA 600
Query 651 CCACGTTGCTAACAAAAACGGCGTCAATAATT-TCGTTCGCCGGATACATAATCTACATA 709
| ||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 601 CGACGTTGCTAACAAAAACGGCGTCCAT-ATTGTCGTTCGCCGGATACATAATCTACATA 659
Query 710 GACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCCCTAAGCGCCTTTTCCAC 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCCCTAAGCGCCTTTTCCAC 719
Query 770 CTCTTTCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCATACCACTCGCTGCACCACACG 829
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 720 CTCTTTCCTCCCCTCAAGTTCCTCTGTTACACTCCCTCATTCCACTCGCTGCACCATACG 779
Query 830 CAGTTCCGGACCAACTACTCCCTCTTCATGCCCTTGTATGACTACATCTACGGCACAATG 889
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 CAGTTTCGGACCAACTACTCCCTCTTCATGCCCTTTTATGACTACATCTACGGCACAATG 839
Query 890 GATGAAAGCACGGATACGTTGTACGAGAAAACTCTAGAAAGAGGAGATGATATAGTGGAC 949
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 840 GATGAAAGCACGGATACGTTGTACGAGAAATCTCTAGAAAGAGGAGATGATAGAGTGGAC 899
Query 950 GTGGTGCACTTAACTCACCTGACGACGCCAGAATCCATATACCATTTGCGCATTGGCTTG 1009
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 900 GTGGTGCACTTAACTCACCTGACGACTCCAGAGTCCATATACCATTTGCGCATTGGCTTG 959
Query 1010 GCCTCATTTGCCTCCTACCCCTTCGCTTATAGATGGTTCATGCGCCTTTTGTGGCCTTTC 1069
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 960 GCCTCATTTGCCTCCTACCCCTTCTCTTATAGGTGGTTCATGCGCCTTTTGTGGCCTTTC 1019
Query 1070 ACCTCTCTCTCCATGATATTCACGCTCTTCTACGCCCGCCTCTTTGTCGCTGAGAGAAAC 1129
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACCTCTCTCTCCATGATCTTCACGCTCTTCTACGCCCGCCTCTTTGTCGCTGAGAGAAAC 1079
Query 1130 TCCTTCAACAAGCTCAACTTGCAGTCTTGGGTGATACCTAGATATAATCTACAGTACTTG 1189
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 TCCTTCAAGAAGCTCAACTTGCAGTCTTGGATGATACCTAGATATAATCTACAGTACTTG 1139
Query 1190 TTAAAATGGAGGAAAGAAGCGATCAATAACATGATTGAGAAAGCGATACTGGAGGCAGAT 1249
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 TTAAAATGGAGGAAAGACGCGATCAACAACATGATTGAGAAAGCGATACTGGAGGCAGAT 1199
Query 1250 AAGAAAGGAGTGAAGGTGCTTAGTCTGGGTCTCATGAACCAAG 1292
|| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 1200 AAAAAAGGAGTGAAGGTGCTTAGCCTGGGCCTCATGAACCAAG 1242
> Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2
Length=2131
Score = 222 bits (120), Expect = 7e-57
Identities = 167/190 (88%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 694 ATACA-TAATCTACATAGACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCC 752
||||| || | ||||| ||||||||||||||||||||||| || ||||||||| | |||
Sbjct 675 ATACATTACT-TACATTGACTTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCC 733
Query 753 CTAAGCGCCTTTTCCACCTCTTTCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCATACC 812
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| | |
Sbjct 734 CTAAGCGTCTCTTCCACCTCTTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGTTTC 793
Query 813 ACTCGCTGCACCACACGCAGTTCCGGACCAACTACTCCCTCTTCATGCCCTTGTATGACT 872
||||||| ||||||||||||||||||||||||||||| || |||||||| | || ||||
Sbjct 794 ACTCGCTCCACCACACGCAGTTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACT 853
Query 873 ACATCTACGG 882
||||||||||
Sbjct 854 ACATCTACGG 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77742190045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5