BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02210.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918872 jgi|Araly1|918872|scaffold_100153.1 246 5e-65
> Ahg918872 jgi|Araly1|918872|scaffold_100153.1
Length=646
Score = 246 bits (133), Expect = 5e-65
Identities = 209/244 (86%), Gaps = 12/244 (5%)
Strand=Plus/Plus
Query 3 GGTATGGTTCTTCTTTAGTTGTGATGA--AT-A---TAACGAAGAAATATTGAAAACGAA 56
|||||||| ||||| |||| ||||||| || | |||||||||||||| ||||||||
Sbjct 236 GGTATGGTACTTCTATAGTCGTGATGACTATAAGTTTAACGAAGAAATATGGAAAACGAG 295
Query 57 TTCGGGTTATTGGAAAGAAACTGTATCCAACACACCAATCATTGGCAAGTGGATAACTAG 116
||||||||||||||||||||| | |||||||||||||||||| || ||| ||| || |
Sbjct 296 TTCGGGTTATTGGAAAGAAACCGGATCCAACACACCAATCATCGGTAAGAGGAAAAGAAC 355
Query 117 TAATGGTGTTAAAATTGGTGAGAA-ACAAGTTTTGGT-TTTCCAATCGTATG-AAAACAT 173
||||||||||| ||||||||||| | |||||||||| ||| ||||| | || ||| | |
Sbjct 356 CAATGGTGTTAAGATTGGTGAGAAGA-AAGTTTTGGTGTTT-CAATCTTGTGCAAATCCT 413
Query 174 CAATGGATCCAAATCCGATTGGGTAATGCACGTGTATCAACCAACGTTTTTGCCTCCTAA 233
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 414 -AATGGATCCAAATCCGATTGGGTAATGCACGTGTATCAACCCACGTTTTTGCCTCCCGA 472
Query 234 TCAG 237
||||
Sbjct 473 TCAG 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5