BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02230.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909883 jgi|Araly1|909883|Al_scaffold_0001_137 1404 0.0
Ahg333558 jgi|Araly1|333558|fgenesh1_pg.C_scaffold_1000123 507 9e-143
> Ahg909883 jgi|Araly1|909883|Al_scaffold_0001_137
Length=1083
Score = 1404 bits (760), Expect = 0.0
Identities = 985/1092 (90%), Gaps = 21/1092 (2%)
Strand=Plus/Plus
Query 2 ATGATGAATCCGGTGGGTTTCAGATTCCGTCCAAACGACGAGGAGATCGTCGACCATTAC 61
||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAAGAGATCGTCGACCATTAC 60
Query 62 CTCCGGCCAAAAAATCTCGATAGTGACACTAGCCATGTCGATGAAGTCATTAGCACAGTC 121
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTCCGGCCAAAAAATCTCGATAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGTC 120
Query 122 GATATCTGTAG-CTTCGAGCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGAGA 180
||||||||| | || ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GATATCTGT-GACTCCGATCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGTGA 179
Query 181 TGGGGTTTGGTATTTCTTTAGTGTTAAGGAGATGAAGTATAACAGAGGTGATCAACAGAG 240
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 180 TGGGGTTTGGTATTTCTTTAGTCTTAAAGAGATGAAGTATAACAGAGGTGATCAACAGAG 239
Query 241 AAGAAGAACAAACTCTGGGTTTTGGAAGAAAACTGGAAAAACAATGACTGTCATGCGCAA 300
|||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 240 AAGAAGAACAAATTCTGGCTTTTGGAAGAAAACTGGAAAAACCTTGACTATCATGCGCAA 299
Query 301 AAGAGGAAATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTTTTTAAGAATCGAGATGG 360
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 300 AAGAGGTAATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATCGAGATAG 359
Query 361 TTCAAAGACCGACTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAATCAGAT 420
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 TTCCAAGACCGATTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAATCAGGT 419
Query 421 GATGACGTATACAGTCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATCTCTTCTTC 480
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 GATGACGTATACAATCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATTTCTTCTTC 479
Query 481 TTCTACTGGTAGTGAAATTGAACAGATTCACTCTTTAATCCCTCTTGTGAACAGTTCTGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 TTCTACTGGTAGTGAAATTGAACAGATTCACTCTTTAATCCCTCTTGTGAACAATTCTGG 539
Query 541 AGGATCTGAGGGTTCGTCGTTTCACAGCCAAGAATTACAGAATTCAAGTCAGTCTGGTGT 600
|||||||||||| ||||||| | | ||||||||||||||||| ||||||||| | |||
Sbjct 540 AGGATCTGAGGGATCGTCGTAT-A--GCCAAGAATTACAGAATCCAAGTCAGTTTAGTGG 596
Query 601 CTTTGCTAATGTGCAGGGAGAATCTCAAATCGATGATGCAACTACACCGATTGAGGAGGA 660
|||| || ||||||| |||| |||| | ||||||||||||||| ||| |||||| |
Sbjct 597 CTTTTCTGATGTGCACCAAGAAGCTCAGCTTGATGATGCAACTACATCGACTGAGGA--A 654
Query 661 ATGGAAAACATGGTTGAATAATGATGGTGATGAGCAGAGGAAT-ATCAT-GTTTA--TGC 716
|||||||| ||||||||| |||||||||||||||||| |||| || || || | |||
Sbjct 655 -TGGAAAACCTGGTTGAATGATGATGGTGATGAGCAGATGAATTAT-ATTGTGAACATGC 712
Query 717 AAGATCATCGCAGCGATTACACACCTCTAAAGTCGTTAACTGGTGTCTTCAGTGATGATA 776
||||| |||||| ||| ||| ||||| |||| | || ||||||||||||| |||| |||
Sbjct 713 AAGATGATCGCAACGACCACAGACCTCAAAAGCCATTGACTGGTGTCTTCATTGATTATA 772
Query 777 GCAGTGATGATAATGATTCTGATTTGATATCTCCTAAA-ACAAATTCTATTGGAACTTCG 835
|||||||||||||||||||||||||| ||||||| ||| ||||||| ||||| ||||| |
Sbjct 773 GCAGTGATGATAATGATTCTGATTTGCTATCTCC-AAATACAAATTTTATTGAAACTTGG 831
Query 836 AGCACTTGTGCTAGTTTTGCTAGCTCAAATCATCAGATAGACCAAA-C-----TCAACAT 889
||| |||||| ||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 832 AGCTCTTGTGATAGTTTTGCTAGCTCAAATCATCGGATAGACCAAATCAAAACTCAACAA 891
Query 890 TCTCCTGACTCAACAGTCCAGCTAGTGTCATTAACTCAAGAGGTGAGCCAAGGTCCGGGT 949
||||||||||||||| || || ||||| |||||||||||||||||||||||| || ||||
Sbjct 892 TCTCCTGACTCAACAATCAAGTTAGTGACATTAACTCAAGAGGTGAGCCAAGCTCTGGGT 951
Query 950 CAAGTGACTGTGATTCGAGAGCATAAATTGGGTGAAGAGTCTGTCAAGAAGAAAAGAGCT 1009
|||| || || |||| ||||||||||||||||| ||||| | |||| ||||||||||||
Sbjct 952 CAAGGGATTGAGATTGGAGAGCATAAATTGGGTCAAGAGACGGTCAGGAAGAAAAGAGCA 1011
Query 1010 AGTTTCGTTTACAGGATGATACACAGATTAGTCAAGAAAATTCACCAATGTTATTCTATC 1069
||||||||||||||||||||||| ||||| ||||||||||| || | ||||| |||||||
Sbjct 1012 AGTTTCGTTTACAGGATGATACAAAGATTGGTCAAGAAAATGCAGCTATGTTCTTCTATC 1071
Query 1070 TCAAGAACATGA 1081
||||||||||||
Sbjct 1072 TCAAGAACATGA 1083
> Ahg333558 jgi|Araly1|333558|fgenesh1_pg.C_scaffold_1000123
Length=651
Score = 507 bits (274), Expect = 9e-143
Identities = 449/531 (85%), Gaps = 22/531 (4%)
Strand=Plus/Plus
Query 2 ATGATGAATCCGGTGGGTTTCAGATTCCGTCCAAACGACGAGGAGATCGTCGACCATTAC 61
||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAGGAGATAGTCGACCATTAC 60
Query 62 CTCCGGCCAAAAAATCTCGATAGTGACACTAGCCATGTCGATGAAGTCATTAGCACAGTC 121
|||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTCCGGGTGAAAAATCTTGAAAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGTC 120
Query 122 GATATCTGTAGCTTCGAGCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGAGAT 181
|||||||||||||| || |||||| ||||||||||| |||| |||||||||||||| |||
Sbjct 121 GATATCTGTAGCTTAGAACCTTGGAATTTACCTTCCCAGTCTATGATCAAATCGAGTGAT 180
Query 182 GGGGTTTGGTATTTCTTTAGT-GTTAAGGAGA-TGAAGTATAACAGAGGTGATCAACAGA 239
| ||||||| |||||||| || || ||||||| | || |||||||||||||||| |||||
Sbjct 181 GCGGTTTGGCATTTCTTTGGTCGT-AAGGAGAATAAA-TATAACAGAGGTGATCGACAGA 238
Query 240 -GAAGAAGAACAAACTCTGGGTTTTGGAAGAAAACTGGAAAAACAATGACTGTCATGCGC 298
|| ||| ||| || ||||| |||||||||||||||||| || || | | ||||||||
Sbjct 239 TGA-GAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGAGTTACCATAAATATCATGCGC 297
Query 299 AAAAGAGGAAATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGT-TTTTAAG--AATCGA 355
||||| |||||||| || |||||||||||||||| ||||||| | ||||| || | |
Sbjct 298 AAAAGGGGAAATCGCGAAAAGATCGGTGAGAAAAAGGTTTTGATGTTTTACTTTAA-CAA 356
Query 356 GATGGT-TCAAAGACCGACTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAA 414
|| | | |||| | |||| ||||||||||| |||||||||||||||| || || ||||||
Sbjct 357 GA-G-TCTCAA-GTCCGATTGGGTTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAA 413
Query 415 TCAGATGATGACGTATACAGTCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATCTC 474
|| ||||||| |||||| |||||||||| |||||||||||||| || ||||||
Sbjct 414 TC---TGATGACATATACACTCTGCAAAGTCAAGTTTAAGGGTGAA-AG-CAGAGAGGG- 467
Query 475 TTCT-TCTTCTACTGGTAGTGAAATTGAACAGATTCACTCTTTAATCCCTC 524
|||| | |||| ||||||||| |||||| | | ||||||||| |||||||
Sbjct 468 TTCTGT-TTCTTCTGGTAGTGGAATTGAGCTTACTCACTCTTTGATCCCTC 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5