BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02250.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909883 jgi|Araly1|909883|Al_scaffold_0001_137 656 0.0
Ahg333558 jgi|Araly1|333558|fgenesh1_pg.C_scaffold_1000123 603 1e-171
Ahg311334 jgi|Araly1|311334|fgenesh1_pm.C_scaffold_1000114 195 8e-49
> Ahg909883 jgi|Araly1|909883|Al_scaffold_0001_137
Length=1083
Score = 656 bits (355), Expect = 0.0
Identities = 875/1113 (79%), Gaps = 87/1113 (8%)
Strand=Plus/Plus
Query 1 ATGGCGAATCCGGTGGGTTTTAGATTCCGTCCGACTGACGGGGAGATCGTCGA-CATTTA 59
|||| ||||||||||||||| |||||||||||||| |||| ||||||||||| || |||
Sbjct 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAAGAGATCGTCGACCA-TTA 59
Query 60 CCTCCGACCGAAAAATCTCGAAAGTAACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
|||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 60 CCTCCGGCCAAAAAATCTCGATAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
Query 120 TGATATTTGTAG-CTTCGACCCTTGGGACTTACCTTCCCATTCTAGGATGAAAACAAGAG 178
||||| ||| | || ||| |||||||| ||||||||| | || | ||| ||| | || |
Sbjct 120 CGATATCTGT-GACTCCGATCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGTG 178
Query 179 ATCAGGTTTGGTATTTCTTCGGCCGTAAGGAGAACAAATATGGTAAAGGTGATCGACAGA 238
|| ||||||||||||||| | | ||| |||| || ||| | |||||||| |||||
Sbjct 179 ATGGGGTTTGGTATTTCTTTAGTCTTAAAGAGATGAAGTATAACAGAGGTGATCAACAGA 238
Query 239 TAAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGCGTTACCATGGA-TATAATGCGC 297
||||| ||| || ||||| ||||||||||||||||| ||| | || ||| ||||||
Sbjct 239 GAAGAAGAACAAATTCTGGCTTTTGGAAGAAAACTGGAAAAACC-TTGACTATCATGCGC 297
Query 298 AAAACG-GG-AGATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATC-AC 354
|||| | || | ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 298 AAAA-GAGGTA-ATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATCGA- 354
Query 355 GGTGGTTCCAAGTCCGATTGGGCTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAAT 414
| | |||||||| ||||||||| |||||| |||||||||||||||| || || |||||||
Sbjct 355 GATAGTTCCAAGACCGATTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAAT 414
Query 415 CAGATAATGACATACACACTCTGCAAAGTTAAGTTTAAGGGTGAA-AGG-AGAGAATT-T 471
||| | ||||| || ||| ||||||||||| |||||||||||||| || ||||| || |
Sbjct 415 CAGGTGATGACGTATACAATCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATTTCT 474
Query 472 TCAG-TTGCTACTGGTAGTGGAATT-AAGCATACTCACTCTTTAATCCCTCCTACCAACA 529
|| || |||||||||||| |||| || || | ||||||||||||||||| | ||||
Sbjct 475 TCTTCTT-CTACTGGTAGTGAAATTGAA-CAGATTCACTCTTTAATCCCTCTTGTGAACA 532
Query 530 ATTCTGGAGTTTTGAGTGTAGAGACAGAGGGATCGTTGTTTCACAGCCAAGAATCACAGA 589
||||||||| || | | ||| | | ||||| || | | ||||||||| |||||
Sbjct 533 ATTCTGGAG----GA-TCT-GAG---G-G--ATCGTCGTAT-A--GCCAAGAATTACAGA 577
Query 590 ATCCAAGTCAGTTTTCTGGCTTT-CTTGATGTGGATGCACTA-GAT-AGG--GACTTCTG 644
|||||||||||||| ||||||| || |||||| | || | | | || || | ||
Sbjct 578 ATCCAAGTCAGTTTAGTGGCTTTTCT-GATGTGCAC-CAAGAAGCTCAGCTTGA-TGATG 634
Query 645 CAA-TATTTTGAGTGATGATTTCAAAGGCTTCTTTAATGATGACG---ATGAGCAGA-GT 699
||| || | || ||| || | ||| || || |||||||| | ||||||||| |
Sbjct 635 CAACTACATCGACTGAGGAATGGAAAACCTGGTTGAATGATGATGGTGATGAGCAGATGA 694
Query 700 A--AGATTGTTT-CTATGCAAGATGATCGCAACAACCACACACCTCAAAAGCCATTGACC 756
| | ||||| | |||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 695 ATTATATTGTGAAC-ATGCAAGATGATCGCAACGACCACAGACCTCAAAAGCCATTGACT 753
Query 757 GGTGTCTTCAGTGATCATAGCACCGATGGTAGTGATTCTGATCCGATTTCTGCAACA-AC 815
|||||||||| |||| |||||| |||| || |||||||||| | | ||| ||| | ||
Sbjct 754 GGTGTCTTCATTGATTATAGCAGTGATGATAATGATTCTGATTTGCTATCTCCAA-ATAC 812
Query 816 TA-TTTCCATTCAAACTTTAAGCACTTGTCCTAGTTTTGGTAGCTCAAATCCTCT-ATA- 872
| ||| ||| |||||| ||| ||||| |||||||| ||||||||||| || |||
Sbjct 813 AAATTTT-ATTGAAACTTGGAGCTCTTGTGATAGTTTTGCTAGCTCAAATCATCGGATAG 871
Query 873 -CCAAATCACTGACTTGCAGGAATCTCCTAACTCAA---TCAAGTTAGTGTCATTAGCTC 928
|||||||| ||| || |||||||| |||||| ||||||||||| ||||| |||
Sbjct 872 ACCAAATCAAA-ACT--CAACAATCTCCTGACTCAACAATCAAGTTAGTGACATTAACTC 928
Query 929 AAGAGGTGAGCAAAACACCGGGAACCGGTATTGATAATGATGCACAAGGGACTGAGATTG 988
||||||||||| || | | | | | | | || | |||| ||||||||
Sbjct 929 AAGAGGTGAGCCAA-----G----C---TCTGG-----G-T-CA-A-GGGATTGAGATTG 967
Query 989 GTGAGCATAAATTGGGTCAAGAGACGATCAAGAACAAAAGAGCTGGTTTC-TTTCACAGG 1047
| |||||||||||||||||||||||| ||| ||| |||||||| ||||| ||| |||||
Sbjct 968 GAGAGCATAAATTGGGTCAAGAGACGGTCAGGAAGAAAAGAGCAAGTTTCGTTT-ACAGG 1026
Query 1048 ATGATACAAAAATTCGTCAAGAAAATTCACCTA 1080
|||||||||| ||| ||||||||||| || |||
Sbjct 1027 ATGATACAAAGATTGGTCAAGAAAATGCAGCTA 1059
> Ahg333558 jgi|Araly1|333558|fgenesh1_pg.C_scaffold_1000123
Length=651
Score = 603 bits (326), Expect = 1e-171
Identities = 486/563 (86%), Gaps = 11/563 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAATCCGGTGGGTTTTAGATTCCGTCCGACTGACGGGGAGATCGTCGA-CATTTA 59
|||| ||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||
Sbjct 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAGGAGATAGTCGACCA-TTA 59
Query 60 CCTCCGACCGAAAAATCTCGAAAGTAACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
|||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 60 CCTCCGGGTGAAAAATCTTGAAAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
Query 120 TGATATTTGTAGCTTCGACCCTTGGGACTTACCTTCCCATTCTAGGATGAAAACAAGAGA 179
||||| |||||||| || |||||| | ||||||||||| |||| ||| ||| | || ||
Sbjct 120 CGATATCTGTAGCTTAGAACCTTGGAATTTACCTTCCCAGTCTATGATCAAATCGAGTGA 179
Query 180 T-CAGGTTTGGTATTTCTTCGGCCGTAAGGAGAACAAATATGGTAAAGGTGATCGACAGA 238
| | ||||||| ||||||| || ||||||||||| |||||| | ||||||||||||||
Sbjct 180 TGC-GGTTTGGCATTTCTTTGGTCGTAAGGAGAATAAATATAACAGAGGTGATCGACAGA 238
Query 239 TAAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGCGTTACCATGGATATAATGCGCA 298
| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 239 TGAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGAGTTACCATAAATATCATGCGCA 298
Query 299 AAACGGGAGATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATCACG-GT 357
||| |||| |||| || |||||||||||||||| ||||||| ||||| | | || |
Sbjct 299 AAAGGGGAAATCGCGAAAAGATCGGTGAGAAAAAGGTTTTGATGTTTTACTTTAACAAGA 358
Query 358 GGT-TCCAAGTCCGATTGGGCTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAATCA 416
| | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 G-TCTC-AAGTCCGATTGGGTTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAATCT 416
Query 417 GATAATGACATACACACTCTGCAAAGTTAAGTTTAAGGGTGAAAGGAGAGAATTTTCAGT 476
||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||| ||
Sbjct 417 GAT---GACATATACACTCTGCAAAGTCAAGTTTAAGGGTGAAAGCAGAGAGGGTTCTGT 473
Query 477 TGCTACTGGTAGTGGAATTAAGCATACTCACTCTTTAATCCCTCCTACCAACAATTCTGG 536
| || |||||||||||||| ||| |||||||||||| ||||||| ||||||| ||| |||
Sbjct 474 TTCTTCTGGTAGTGGAATTGAGCTTACTCACTCTTTGATCCCTCATACCAACGATTTTGG 533
Query 537 AGTTTTGAGTGTAGAGACAGAGG 559
|||||| ||||||||||||||||
Sbjct 534 AGTTTTTAGTGTAGAGACAGAGG 556
> Ahg311334 jgi|Araly1|311334|fgenesh1_pm.C_scaffold_1000114
Length=1134
Score = 195 bits (105), Expect = 8e-49
Identities = 113/117 (97%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 963 TAATGATGCACAAGGGACTGAGATTGGTGAGCATAAATTGGGTCAAGAGACGATCAAGAA 1022
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 993 TAATGATGCACAAGAGACTGAGATTGGAGAGCATAAATTGGGTCAAGAGACGATCAAGAA 1052
Query 1023 CAAAAGAGCTGGTTTCTTTCACAGGATGATACAAAAATTCGTCAAGAAAATTCACCT 1079
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GAAAAGTGCTGGTTTCTTTCACAGGATGATACAAAAATTCGTCAAGAAAATTCACCT 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5