BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02260.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470187 jgi|Araly1|470187|fgenesh2_kg.1__141__AT1G02260.1 2200 0.0
> Ahg470187 jgi|Araly1|470187|fgenesh2_kg.1__141__AT1G02260.1
Length=1590
Score = 2200 bits (1191), Expect = 0.0
Identities = 1443/1561 (92%), Gaps = 31/1561 (2%)
Strand=Plus/Plus
Query 317 AGAAAATGGCAATGGCTCCAGTAATAAAGCTGGTCTTAGGTTCAGTTGCCTTTGCCATTT 376
|||||||||||||||||||||| ||||||||||| ||||| ||| | |||||||||||||
Sbjct 1 AGAAAATGGCAATGGCTCCAGTTATAAAGCTGGTTTTAGGATCAATAGCCTTTGCCATTT 60
Query 377 TCTGGATATTAGCAGTGTTTCCCTCTGTACCATTCCTACCAATTGGTCGAACCGCCGGTT 436
||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 61 TCTGGGTATTAGCAGTGTTTCCCTCTGTGCCGTTCCTACCAATTGGTCGAACCGCCGGTT 120
Query 437 CTCTGTTCGGTGCAATGCTAATGGTTATCTTCCAAGTGATAACCCCGGAACAAGCTTATG 496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTGTTCGGTGCAATGTTAATGGTTATCTTCCAAGTGATAACCCCGGAACAAGCTTATG 180
Query 497 CAGCCATTGATCTCCCGATACTCGGTCTTCTCTTTGGAACGATGGTTGTTAGTATATACC 556
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 181 CAGCCATTGATCTTCCGATACTCGGTCTTCTCTTTGGAACAATGGTTGTTAGTATATATC 240
Query 557 TTGAGAGAGCTGATATGTTCAAGTACTTAGGCACATTGCTTTCGTGGAAAAGCAGAGGTC 616
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |
Sbjct 241 TTGAGAGAGCTGATATGTTCAAGTACTTAGGCACATTGCTTTCGTGGAAGAGTAAAGGAC 300
Query 617 CGAAAGACTTGCTATGTAGAGTCTGTCTTGTTTCCGCTGTTTCAAGCGCTCTGTTTACTA 676
| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 CTAAAGACTTGCTATGTCGAGTCTGTCTTGTTTCCGCGGTTTCAAGCGCTCTGTTTACTA 360
Query 677 ACGATACATCTTGTGTGGTTTTAACCGAGTTTGTGTTGAAGATCGCTAGGCAAAAGAATC 736
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 361 ACGATACATCTTGTGTGGTTTTGACCGAGTTTGTGTTGAAGATCGCTAGGCAAAAGAACC 420
Query 737 TCCCGCCTCACCCGTTTTTGCTCGCTTTAGCCACGAGTGCGAATATTGGTTCTTCTGCTA 796
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TCCCGCCTCACCCTTTTTTGCTCGCTTTGGCCACGAGTGCGAATATTGGTTCTTCTGCTA 480
Query 797 CTCCCATTGGGAATCCGCAGAATCTTGTTATTGCGGTTCAAAGCAAGATCCCGTTTTGGG 856
|||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 481 CTCCCATTGGGAATCCACAGAATCTTGTTATCGCAGTTCAAAGCAAGATCCCCTTTTGGG 540
Query 857 AGTTTCTTCTTGGTGTTTTTCCTGCGATGATTGTTGGTATTACCGTTAACGCTATGCTTC 916
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 541 AGTTTCTTCTTGGGGTTTTTCCTGCGATGATTGTTGGTATTACCGTCAATGCTATGCTTC 600
Query 917 TTCTCGGTATGTATTGGCGGTTATTGTCAGATCATAAAGAGGATGAAGAAGAAGTAC-A- 974
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |
Sbjct 601 TTCTCGGTATGTATTGGCGGCTATTGTCAGATCATAAAGAGGACGAAGAAGAAGCAGGAG 660
Query 975 AAA-TGCTGATTCTGAAGTTGTTGCC----C--AAGAAGATGTC-CAATCTCATAGGTTC 1026
||| ||| |||||||||||| |||| | ||||||||||| || || ||| ||||
Sbjct 661 AAAATGCGGATTCTGAAGTTCTTGCTGTTGCTGAAGAAGATGTCACA-TCACATCGGTTT 719
Query 1027 TCGCCAGCTACATTTTCGCCAGTCT-CATCCGAAGATTCGAACTTGAGAATGGATGCCGC 1085
||||||||||||||||| ||||| | |||||||||| || ||||| ||||||||| || |
Sbjct 720 TCGCCAGCTACATTTTCACCAGT-TGCATCCGAAGAATCAAACTTCAGAATGGAT-CC-C 776
Query 1086 CGAGACTCTCAGAAACAGAGCGGGTTCAGCGGGTGAGAGCGAGTTAATAAGCTGCAATTC 1145
||||| || ||||||||||||| ||| || |||||||| || ||||| ||| || ||||
Sbjct 777 -GAGACGCTTAGAAACAGAGCGGTTTCTGCAGGTGAGAGTGAATTAATGAGCCGCGATTC 835
Query 1146 AAATGCGTCGAGAGAACAACACAACGACGCAGAGTCTCAAGGAGAGAGCAATAATACCAA 1205
||||||||| ||||||||| || ||||||||||||||||||||||||||| |
Sbjct 836 AAATGCGTCAAGAGAACAA-ACT--GACGCAGAGTCTCAAGGAGAGAGCAATG-T----- 886
Query 1206 CAATATGTTCCAGACCAAGAGATGGAGAAGAGTTTTATGGAAATCAAGTGTTTATTTCAT 1265
| | | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 887 ---T-T-T-CCAGACCAAGAGATGGAGAAGAGTTTTATGGAAACCAAGTGTCTATTTGAT 940
Query 1266 CACATTAGGAATGCTAATATCTCTGCTTATGGGTTTAAACATGTCGTGGACCGCAATTAC 1325
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 941 CACATTAGGAATGCTGATATCTCTGGTTATGGGTTTAAACATGTCGTGGACCGCAATTAC 1000
Query 1326 CGCGGCTCTAGCACTCGTGGTTCTTGATTTCAAAGACGCAAGGCCGTCTCTCGAGAAGGT 1385
|| |||||||| || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1001 TGCAGCTCTAGCTCTTGTCGTTCTTGATTTTAAAGATGCAAGGCCGTCTCTCGAGAAGGT 1060
Query 1386 ATCGTATTCGCTTTTGATCTTTTTCTGCGGGATGTTCATAACCGTTGATGGATTCAACAA 1445
||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1061 ATCATATTCGCTATTGATCTTCTTCTGCGGGATGTTCATTACCGTTGATGGATTCAACAA 1120
Query 1446 AACTGGTATCCCTACCGCTCTATGGGACCTAATGGAGCCATATGCCAAAATTGATCAAGC 1505
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 1121 AACTGGTATCCCTACCGCTCTATGGGACCTAATGGAGCCACATGCCAAAATCGATGAAGC 1180
Query 1506 CAAAGGAATCGCGGTTCTAGCAGTTGTGATTCTTGTCCTCTCCAATGTAGCCTCTAATGT 1565
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CAAAGGAACCGCGGTTCTAGCAGTTGTGATTCTTGTCCTCTCCAATGTAGCCTCTAATGT 1240
Query 1566 ACCAACCGTGCTTTTGTTGGGAGCAAGAGTGGCGGCATCAGCGATGGGGAGGGAGGAGGA 1625
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1241 ACCAACTGTGCTTTTGTTGGGAGCAAGAGTGGCGGCATCAGCGATGGGGAAAGAGGAGGA 1300
Query 1626 GAAGAAGGCGTGGTTGTTGCTGGCGTGGGTGAGCACAGTGGCTGGAAACTTGACGTTGCT 1685
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1301 GAAGAAGGCGTGGTTGTTGCTGGCGTGGGTGAGCACGGTGGCTGGAAACTTGACGTTGCT 1360
Query 1686 TGGTTCAGCAGCAAACCTGATAGTGTGTGAGCAAGCTCGTAGAGCAGTGAGCCATGGATA 1745
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1361 TGGTTCAGCAGCAAACCTGATAGTGTGTGAGCAAGCTCGTAGGGCAGTGAGCCATGGATA 1420
Query 1746 CACTCTCACTTTCACTAAACATTTCAAATTCGGTTTGCCTTCAACACTCATCGTCACTGC 1805
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1421 CACTCTGACTTTCACTAAACACTTGAAATTCGGTTTGCCTTCAACACTCATCGTCACTGC 1480
Query 1806 GATTGGTCTCTTCCTTATCAAGTAAATCATAGCTCACTCTGCATATATGCTTTCTTTTTT 1865
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CATTGGTCTCTTTCTTATCAAGTAAATCATAGCTCACTCTGCATATATGCTTTCTTTTTT 1540
Query 1866 C 1866
|
Sbjct 1541 C 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5