BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02270.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470188 jgi|Araly1|470188|fgenesh2_kg.1__142__AT1G02270.1 2516 0.0
> Ahg470188 jgi|Araly1|470188|fgenesh2_kg.1__142__AT1G02270.1
Length=1553
Score = 2516 bits (1362), Expect = 0.0
Identities = 1495/1559 (96%), Gaps = 9/1559 (1%)
Strand=Plus/Plus
Query 1 AAAAAGATCTGTTGAGAGAATTCGAAAGAAAAACTCAAATGCAAAGCCATCAGAATCGAA 60
|||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGATCT-TT-TGAGAATTCGAAAAAAAAACTCAAATGCAAAGCCATCAGAATCGAA 58
Query 61 GCAGGCTGAGCTTGATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GCAGGCTGAGCTTAATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC 118
Query 121 TCTTCGTCGTCCTCGCTGCTGTTCCTCTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA 180
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 119 TCTTCGTCGTCCTCGCTGCCGTTCCTTTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA 178
Query 181 GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG 238
Query 241 AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC 298
Query 301 AAAAGAATCATAGCACTCGAGAGAGCGATT-TCCGCACGCTTTGGTTAGCTCGTAACCAG 359
||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 299 AAAAGAATCATAGCATTCGAGAGAGCGATTCTC-GCTCGCTTTGGTTAGCTCGTAACCAG 357
Query 360 AGGATTTTAGATTTGTTACTCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG 419
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGGATTTTAGATTTGCTAATCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG 417
Query 420 GTTGGGAATGAGGAATTAGTGAACATGTACCACCACCAGCTTT-CATCTTCAGGCTACAC 478
|||||||||||||||||||| |||||||||||| | |||||| || |||||||||||||
Sbjct 418 GTTGGGAATGAGGAATTAGTCAACATGTACCACGAGCAGCTTGGCA-CTTCAGGCTACAC 476
Query 479 TATTTATC-AGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATTCATA 537
||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 TATTT-TCCAGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATACATA 535
Query 538 AGGACCATTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG 597
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGGACCACTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG 595
Query 598 TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGAAAGCAAGACG 657
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 596 TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGGAAGCAAGAAG 655
Query 658 TTCAACAAGAAGTTATTATAGTGAACACTCACCTCTTGTTTCCTCACGATTCTAGTTTGT 717
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 656 TTCAACAAGAAGTCATTATAGTGAACACTCACCTGTTGTTTCCTCACGATTCTAGTTTGT 715
Query 718 CTATTGTAAGACTGCATCAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG 777
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTATTGTAAGACTTCATGAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG 775
Query 778 AAAATAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG 837
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AAATTAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG 835
Query 838 GGCATGTCTACAAATTTTTGAGATCTCAAGGGTTTATTTCATCATACGATGATGCTCATC 897
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct 836 GGCATGTCTACAAATTCTTGAGATCTCAAGGGTTCATATCATCATACGATGATGCTCACC 895
Query 898 AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATTT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATAT 955
Query 958 GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGTGATTCAAGAAAACCATTGAGAACAA 1017
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 956 GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGCGATTCAAGAAAACCATTGAGAACAA 1015
Query 1018 GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTACACAAAGCTTCCATAGCCG 1077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1016 GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTCCACAAAGCTTCCATAGCCG 1075
Query 1078 AGGACGATGCCTTTACTTTTCTTGGGGCAAAAAATCACAGTGATTCACTAACCTACTCTG 1137
||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1076 AGGACGATGTATTTGCTTTTCTTGGGGCAAATAATCACAGTGATTCACTCACCTACTCTG 1135
Query 1138 ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACGGGTATTCCACATGGACTTAGCTTCG 1197
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1136 ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACAGGTATTCCGCATGGACTTAGCTTCG 1195
Query 1198 AAGAGACAAAAGAGCTATGGGTCCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG 1257
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1196 AAGAGACAAAAGAGCTATGGGTTCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG 1255
Query 1258 AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA 1315
Query 1318 GTGTGATGGAGAGTAAGAAAGAAGAAGGAGAAGATGAAGCAATCGGATTGAAAGTGAATA 1377
|||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1316 GTGTGATGGAGAGTGACAAAGATGAAGGAGATGATGAAGCAATCGGATTGAAAGTGAATA 1375
Query 1378 AAGCAATTTTGTTTCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATATAT 1437
|||| | |||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1376 AAGCTGTATTGTATCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATCTGT 1435
Query 1438 CCGATCATGCTTGTCTCACCGTACAATTCTCTCCAGTCAAAATGCTTTGTAGCTAAATTT 1497
||||||||||||| ||||||||||||||||| || ||||||||||| || |||||| |||
Sbjct 1436 CCGATCATGCTTGCCTCACCGTACAATTCTCGCCGGTCAAAATGCTATGCAGCTAAGTTT 1495
Query 1498 TGTTTAATTACGGCTCTTGTAAATGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA 1556
|||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGTTTAAT-ATGGCTCTTGTAATTGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5