BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02290.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918879 jgi|Araly1|918879|scaffold_100160.1 1411 0.0
Ahg941911 jgi|Araly1|941911|scaffold_602455.1 508 4e-143
> Ahg918879 jgi|Araly1|918879|scaffold_100160.1
Length=1404
Score = 1411 bits (764), Expect = 0.0
Identities = 892/955 (93%), Gaps = 3/955 (0%)
Strand=Plus/Plus
Query 243 AGATGAATAAGAATCAAACAGTTGGGCTAGACTCTGAAGATGATGACTCTGATGATTACG 302
|||||| ||||||||||| ||||||| ||||||| |||||||| | |||||||||| ||
Sbjct 21 AGATGACTAAGAATCAAATAGTTGGGGTAGACTCAGAAGATGA--A-TCTGATGATTGCG 77
Query 303 ACATTGCGCAAGTAAACTGTGAGCTAGCTTTGGTTGAAGGTCAGCTCTGTAACATACCAT 362
|||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 78 ACATTGCGGAAGCCAACTGTGAGCTAGCTATGGTAGAAGGTCAGCTCTGTAACATACCAT 137
Query 363 ACGAGCTCTACGATCTACCAGATTTAACGGGAATATTGTCTGTTGAGACTTGGAACTCAC 422
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 138 ACGAGCTCTATGATCTACCTGATTTAACGGGGATATTGTCTGTTGAGACTTGGAACTCAG 197
Query 423 TTCTGACTGAAGAAGAAAGATTCTTCCTCTCATGTTTTCTGCCAGATATGGATCCACAGA 482
|||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 198 TTCTTACAGACGAAGAAAGATTCTTCCTCTCATGTTTTCTGCCAGATATGGATCAACAGA 257
Query 483 CTTTCAGTTTGACGATGCAGGAACTTCTTGATGGTGCCAATTTATATTTTGGGAATCCAG 542
|||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 258 CTTTTAGTCTGACGATGCAGGAACTTCTCGGTGGTGCCAATTTATATTTTGGGAATCCAG 317
Query 543 AGGATAAGTTTTACAAGAATTTGCTAGGTGGATTGTTTACTCCAAAGGTAGCTTGTTTCA 602
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 318 TGGATAAGTTTTACAAGAATTTGAGAGGAGGATTGTTTACTCCAAAGGTAGCTTGTTTCA 377
Query 603 AAGAAGGTGTTATGTTTGTCAAGAGGAGAAAGTATTACTACTCTTTAAAGTTCTATCATG 662
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AACAAGGTGTTATGTTTGTCAAGAGGAGAAAGTATTACTACTCTTTAAAGTTCTATCATG 437
Query 663 AAAAGCTGATCAGGACATTTACCGAAATGCAAAGGGTGTGGGTTCAGTATGGAAATAAAT 722
|||||||||||| |||||| ||||| ||||||||| ||||| ||||||||||||| ||||
Sbjct 438 AAAAGCTGATCAAGACATTCACCGAGATGCAAAGGTTGTGGATTCAGTATGGAAAAAAAT 497
Query 723 TGGGCAATTACTCAAGGCTCCTCATTTGGTCAGGACGAACTCAAACCGGTAATCTCAAGC 782
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 498 TCGGCAATTACTCAAGACTCCTCCTTTGGTCAGGACGAACTCAAACCGGTAATCTGAAGC 557
Query 783 TACTGGACCTCAATAGAGTTCCATCTAAGGAAATGGATAGTGCTACATGTAGATTCAAAA 842
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 558 GACTGGGCCTTAATAGAGTTCCATCTGAGGAAATGGATAGTGCTACATGTAGATTCAAAA 617
Query 843 CTCCCAATGTAGTGAAACCCGTGGAAAGAAATAGATCGAAAAGTTTAACCTTCCCTCGCA 902
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 618 CTCCCAATGTAGTGAAACCTGTGGAAAGAAATAGAACGAAAAGTTTAACCTTCCCTCGCA 677
Query 903 GTGGCAGCTCCAAGAACAGTCTCAAGATAAAGATAACCAAGGAAGGAGTATTCCGGTATC 962
|||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||| |
Sbjct 678 GTGGTAGCTCCAAGAACGGTCTCAAGATAAAGATAACCAAGGGAGGAGTATTCGGGTACC 737
Query 963 AAGGTTCCAGCTTAGTTTCTGCTGGCCATCATCATCAGACTTTGCCAAAGGGTGTTCTCA 1022
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 738 AACGTTCCAGCTTAGTTTCTGCTGGCTATCATCATCAGACTTTGCCAAAGGGTCTTCTCA 797
Query 1023 AATTAGTCCCTAAATCTTCTTCTGCCATCCTCAGGAAACCCTATGTAGCTCCAGGAAACA 1082
|||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 798 AATTAGTCCCTAAAGCTTCTTCTGCCATACTCAGGGAACCCTATGTAGCTCCAGGAAACA 857
Query 1083 ATCTCCTGCAAATCCATGAAACCGGTTCAAAGAGTACTAGATTTGCAGCGTCTCCATACT 1142
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 858 ATCTCCTGCAAATCCATGAAACCGTTTCAAAGAGTACTAGATTTGCAGCGTCTCCATACT 917
Query 1143 TAGGTACGACATTTGAGAAACCACCCTACGGAACTCTTGGCTGTTCTATCCCAGA 1197
||||||||| ||||||||||||||||||||||||| | | |||||||||| ||||
Sbjct 918 TAGGTACGAGATTTGAGAAACCACCCTACGGAACTATCGCCTGTTCTATCACAGA 972
Score = 553 bits (299), Expect = 2e-156
Identities = 374/409 (91%), Gaps = 10/409 (2%)
Strand=Plus/Plus
Query 1195 AGACCCTTTCTTAACCTATTTGGAAACTACACAAAGATCAATCC-AAGGTACAGAACCGG 1253
||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 1000 AGACCCTTTCTTAACCTATTTGGAAACAACACAAAGATCAA-CCGAAGGTACAGAACCGG 1058
Query 1254 TGTTTCATGATCCAACACACACTGTTCCCAGTGCTCTCCGTGTTTCAAATTACTCCATCA 1313
||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||| ||
Sbjct 1059 TGTTTCATGATCCAACACACACTATACCCAGAGCTCTTGGTGTTTCAAATTACTCCAGCA 1118
Query 1314 CAG-A-A-CAGAATATACCTCTAAAGCAAGAAGAATATGTCCGGTACCACCTGAAGTCTC 1370
||| | | || ||| | ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1119 CAGAACATCATAATCTGCCTCTAAAGCAAGAAGAATATGTCCACTACCACCTGAACTCTC 1178
Query 1371 CTGGTTTTAAGCCTAGGACTGTTGACAGAGGCTCTGAAACAACAGAGAGCAAGAGGATTT 1430
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CTGGTTTTGAGCCGAGGACTGTTGACAGAGGCTCTGAAACAACAGAGAGCAAGAGGATTT 1238
Query 1431 CGTCTAGTAATAACTTTCAGAGGGAAGCCAAGGCTC-TGAGAAAACCGCTGGGGGTCCTG 1489
|||| ||||||||||||||||||||||||||| || |||||||||||||| | |||||
Sbjct 1239 TGTCTGGTAATAACTTTCAGAGGGAAGCCAAGG-TCCTGAGAAAACCGCTGCGTGTCCTT 1297
Query 1490 AGCGAAGACAATCATGCTCGAGAAGCCAATAGTGACCATTTGTTTTCCTTGACTTACAAG 1549
||||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||
Sbjct 1298 AGCGAAGACAATCATGCTCGAGAAGCCAATACTGACAATTTGTATTCCTTGACGTACAAG 1357
Query 1550 CGAAGAAAGGTTCAGAGAATCGCTTGAGCTCCCGTGACGCTATGCTAAT 1598
||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1358 CGAAGAAAGGTTCAGAGAATCGCTTGAGC-CT--TGACGCTATGCTAAT 1403
> Ahg941911 jgi|Araly1|941911|scaffold_602455.1
Length=1676
Score = 508 bits (275), Expect = 4e-143
Identities = 338/369 (92%), Gaps = 1/369 (0%)
Strand=Plus/Plus
Query 543 AGGATAAGTTTTACAAGA-ATTTGCTAGGTGGATTGTTTACTCCAAAGGTAGCTTGTTTC 601
|||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1308 AGGATAGGTTTTACAAGACATTTGAGAGGAGGATTGTTTACTCCAAAGGTAGCTTGTTTC 1367
Query 602 AAAGAAGGTGTTATGTTTGTCAAGAGGAGAAAGTATTACTACTCTTTAAAGTTCTATCAT 661
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1368 AAAGAAGGTGTTATGTTTGTTAAGAGGAAAAAGTATTACTACTCTTTAAAGTTCTATCAT 1427
Query 662 GAAAAGCTGATCAGGACATTTACCGAAATGCAAAGGGTGTGGGTTCAGTATGGAAATAAA 721
||||||||||||| |||||| ||||| ||||| ||| || |||||| ||||||||| |||
Sbjct 1428 GAAAAGCTGATCAAGACATTCACCGAGATGCAGAGGTTGCGGGTTCTGTATGGAAAGAAA 1487
Query 722 TTGGGCAATTACTCAAGGCTCCTCATTTGGTCAGGACGAACTCAAACCGGTAATCTCAAG 781
||||||||| ||||||| |||||| ||||||||| || ||| |||||||| ||||| |||
Sbjct 1488 TTGGGCAATAACTCAAGACTCCTCCTTTGGTCAGAACAAACACAAACCGGGAATCTAAAG 1547
Query 782 CTACTGGACCTCAATAGAGTTCCATCTAAGGAAATGGATAGTGCTACATGTAGATTCAAA 841
|| || ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1548 CTGCTAGACCTTAATAGAGTTCCATCTGAGGAAATGGATAGTGCTACATGTAGATTCAAA 1607
Query 842 ACTCCCAATGTAGTGAAACCCGTGGAAAGAAATAGATCGAAAAGTTTAACCTTCCCTCGC 901
|||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct 1608 ACTCCCAATGTAGTGAAACCTGTGGAAAGAAATAGAAGGAAAAGTTAAACCTTCCCTCGC 1667
Query 902 AGTGGCAGC 910
|||||||||
Sbjct 1668 AGTGGCAGC 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5