BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02305.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918881 jgi|Araly1|918881|scaffold_100162.1 1858 0.0
Ahg918880 jgi|Araly1|918880|scaffold_100161.1 1461 0.0
Ahg490415 jgi|Araly1|490415|fgenesh2_kg.6__3549__AT4G01610.1 857 0.0
> Ahg918881 jgi|Araly1|918881|scaffold_100162.1
Length=1125
Score = 1858 bits (1006), Expect = 0.0
Identities = 1087/1126 (97%), Gaps = 6/1126 (1%)
Strand=Plus/Plus
Query 113 CAGAAGAGAAAGATCCATGGCTGATAATTGTATCAGACTTCTTCACTCAGCCTCTGTTTT 172
|||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 5 CAGAAGAGAAAGATTCATGGCTGATAATTGTATCA-A--ACTTCACTTAGCCTCTGTTTT 61
Query 173 CTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGGGTATTGCAGCTGAAAA 232
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 62 CTTCTTTTTAGGGCTTCTAATTTCATCCTTCAAC---TTGCAGGGTATTGCAGCAGAAAA 118
Query 233 TCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGAATGAGATTGTAAAGGAAGTCAA 292
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 TCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGAATGAGATTGTCAAGGAAGTCAA 178
Query 293 TGAGAATCCAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTGT 352
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 179 TGAGAATCCAAACGCTGGATGGAAAGCTGCTTTCAATGATCGGTTTGCAAACGTCACTGT 238
Query 353 TGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGT 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGT 298
Query 413 GCCTATTGTAAGCCATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACCGC 472
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 ACCTATTGTGAGTCATGATATATCTTTGAAGCTTCCTAAAGAATTTGATGCTAGAACCGC 358
Query 473 TTGGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCACTGTGGTTCTTGCTG 532
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 359 TTGGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCATTGTGGTTCATGCTG 418
Query 533 GGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATGT 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 GGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATAT 478
Query 593 TTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAA 652
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 479 TTCTTTATCTGTCAATGATCTCTTAGCATGTTGTGGATTCCTTTGCGGACAAGGTTGTAA 538
Query 653 TGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGA 712
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 CGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTAACTGAAGA 598
Query 713 GTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCGCTTACCC 772
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 599 GTGTGATCCATACTTTGACAATACTGGCTGCTCTCACCCGGGATGTGAACCCGCTTACCC 658
Query 773 TACACCAAAATGTGCAAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACA 832
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TACACCAAAATGTGCGAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACA 718
Query 833 TTATGGTGTTAGTGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTA 892
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTATGGTGTTAGCGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTA 778
Query 893 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCGCATTACAAATC 952
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCACATTACAAATC 838
Query 953 TGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAACTTATTGG 1012
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 AGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAGCTTATTGG 898
Query 1013 CTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 958
Query 1073 CTGGGGTGATGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1132
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTGGGGAGATGATGGTTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1018
Query 1133 TGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTACTACTTCAGA 1192
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1019 TGGTGTTGTAGCCGGTTTACCTTCAGACAGGAACGTATTTAAAGGTATTACTACTTCAGA 1078
Query 1193 TGATCTTCTTGTTTCCTCATTTTAAACAGGAATATGTGTCTCTACT 1238
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 TGATCTTCTTGTTTCCTCATTTTAAACAGGAAGATGTGTCTCTACT 1124
> Ahg918880 jgi|Araly1|918880|scaffold_100161.1
Length=1122
Score = 1461 bits (791), Expect = 0.0
Identities = 1019/1127 (90%), Gaps = 23/1127 (2%)
Strand=Plus/Plus
Query 119 AGAAAGATCCATGGCTGATA---ATTGTATCAGACTTCTTCACTCAGCCTCTGTTTTCTT 175
||| |||| ||||||||||| |||||||||||||||||||| ||||| | | || ||
Sbjct 11 AGAGAGATTCATGGCTGATAGTTGTTGTATCAGACTTCTTCACTTAGCCT-T-TGTT-TT 67
Query 176 CTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGGGTATTGCAGCTGAAAATCT 235
| || |||| ||||||||||||||||| |||||||||| |||||| | ||||||
Sbjct 68 C---TT---GCTTTTAATTTCATCCTTCAAC---TTGCAGGGTACTGCAGCAGGAAATCT 118
Query 236 TTCCAAGCAGAAACTGACCTCA-TGGATTCTTCAGAATGAGATTGTAAAGGAAGTCAATG 294
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 119 TTCCAAGCAGAAACTGACCTCACT-GATTCTTCAGAATGAGATTGTAAAGGAAGTCAATG 177
Query 295 AGAATCCAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTGTTG 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 178 AGAATCCAAACGCTGGATGGAAAGCTTCTTTGAATGATCGGTTTGCAAACGCCACCGTTG 237
Query 355 CAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGTGC 414
||||||||||||| || |||||||||||||||||||||||||||| || || ||||| |
Sbjct 238 CAGAGTTTAAGCGTCTCCTTGGTGTTAAACCAACACCAAAGACGGCATACTTAGGTGTAC 297
Query 415 CTATTGTAAGCCATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACCGCTT 474
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 CTATTGTAAGACATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACAGCTT 357
Query 475 GGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCACTGTGGTTCTTGCTGGG 534
||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 358 GGTCACAGTGCACAAGTATTCCAAGGATCTTAGATCAGGGTCATTGTGGTTCTTGCTGGG 417
Query 535 CCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATGTTT 594
| ||||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||
Sbjct 418 CATTTGGTGCTGTTGAATCACTGTCCGACAGGTTTTGCATCAAATATAACTTGAATGTTT 477
Query 595 CTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAATG 654
| ||||||| ||||||| || |||||||||||||||| |||||||||| |||||||||||
Sbjct 478 CCTTATCTGCCAATGATGTTGTAGCATGTTGTGGATTACTTTGCGGTCTAGGTTGTAATG 537
Query 655 GTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGT 714
|||||| |||||| | ||| |||| ||||||||| ||||||||||||| || |||||||
Sbjct 538 GTGGATTCCCAATGGGTGCATGGCTGTACTTTAAATACCACGGTGTAGTAACCGAAGAGT 597
Query 715 GTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCGCTTACCCTA 774
||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 598 GTGATCCATACTTTGACAATACTGGTTGCTCTCACCCGGGATGTGAACCCGGTTACCCTA 657
Query 775 CACCAAAATGTGCAAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACATT 834
|||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||| |
Sbjct 658 CACCAAAATGTGTGAGGAAATGTGTTAGCGAAAACCAGCTATGGGGTGAATCAAAACACT 717
Query 835 ATGGTGTTAGTGCGTACA-AGGTCAGATC-TCACCCTGATGACATTATGGCAGAAGTTTA 892
||||||| | || |||| | ||| ||| | ||||| | |||||||||||||| |||||
Sbjct 718 ATGGTGTCAACGCATACAGAA-TCA-ATCATGACCCTCAAGACATTATGGCAGAGGTTTA 775
Query 893 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCGCATTACAAATC 952
||| || |||||||| |||||||| || || ||||||||||||||||| |||||||||||
Sbjct 776 CAAGAACGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGGACTTTGCACATTACAAATC 835
Query 953 TGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAACTTATTGG 1012
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 836 AGGAGTGTACAAGCACATAACGGGTACTAAGATTGGAGGTCATGCTGTTAAGCTTATTGG 895
Query 1013 CTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 1072
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTGGGGAACTTCTGATGACGGCGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 955
Query 1073 CTGGGGTGATGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1132
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 956 CTGGGGTGATGATGGTTACTTCAAGATCAGGAGAGGAACGAACGAATGTGGCATTGAACA 1015
Query 1133 TGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTT-AAAGGTATTACTACTTCAG 1191
||||||||||| ||||||||||||||||||||||| ||| |||| ||| || |||||||
Sbjct 1016 CGGTGTTGTAGCCGGTTTACCTTCAGACAGGAACGT-GTTTAAAGATATAACCACTTCAG 1074
Query 1192 ATGATCTTCTTGTTTCCTCATTTTAAACAGGAATATGTGTCTCTACT 1238
|||||||||| |||||||||||||||||| || |||||||||||||
Sbjct 1075 ATGATCTTCTGGTTTCCTCATTTTAAACAACAAGATGTGTCTCTACT 1121
> Ahg490415 jgi|Araly1|490415|fgenesh2_kg.6__3549__AT4G01610.1
Length=1368
Score = 857 bits (464), Expect = 0.0
Identities = 811/979 (83%), Gaps = 21/979 (2%)
Strand=Plus/Plus
Query 210 TTGCAGGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTC-ATGGATTCTTCA 268
||| ||||||| ||||| ||||||||| |||| |||||||||| ||| | ||| |||||
Sbjct 210 TTGAAGGGTATAGCAGCAGAAAATCTTACCAAACAGAAACTGAACTCGA-AGATACTTCA 268
Query 269 GAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCTTCTTTCAA 328
| |||||||||| ||| ||||||| | |||||||||||||||||||||||| || | ||
Sbjct 269 GGATGAGATTGTGAAGAAAGTCAACCAAAATCCAAACGCTGGATGGAAAGCTGCTATAAA 328
Query 329 TGATCGGTTTGCAAACGCCACTGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAAC 388
|||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 329 TGATCGATTTTCAAACGCCACTGTTGCAGAGTTTAAGCGCCTTCTCGGTGTTAAACCAAC 388
Query 389 ACCAAAGACGGAATTT-TTGGGTGTGCCTATTGTAAGCCATGATATATCTTTGAAGCTTC 447
||| |||| | | ||| || ||||| ||| |||||||||||||| |||||||||||| |
Sbjct 389 ACCGAAGAAGCA-TTTCTTAGGTGTTCCTGTTGTAAGCCATGATCCATCTTTGAAGCTAC 447
Query 448 CAAAAGAATTTGATGCTAGAACCGCTTGGTCACAGTGCACCAGTATTGGAAGGATCTTAG 507
| |||| |||||||||||||| |||||| |||| ||||| |||||||||| ||||||||
Sbjct 448 CTAAAGCTTTTGATGCTAGAACTGCTTGGCCACAATGCACTAGTATTGGAAAGATCTTAG 507
Query 508 ATCAGGGTCACTGTGGTTCTTGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGAT 567
||||||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 508 ATCAGGGACATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTATCTGATAGAT 567
Query 568 TCTGCATCAAATATAACATGAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTG 627
|||| ||| ||| | |||||| ||||| |||| || ||||||||| |||| ||||| |
Sbjct 568 TCTGTATCCAATTTGGCATGAACATTTCTCTATCAGTTAATGATCTTCTAGCTTGTTGCG 627
Query 628 GATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTA 687
|||||| ||| ||| | |||||| | ||||| |||||||||||||| |||| ||||||
Sbjct 628 GATTCCGTTGTGGTGATGGTTGTGACGGTGGCTACCCAATTGCTGCTTGGCAATACTTTT 687
Query 688 AGCACCA-CGGTGTAGTCACTGAAGAGTGTGATCCATACTTCGACAATACTGGTTGCTCG 746
| | | |||||| || || |||||||||||||||||||| || ||||| || |||||
Sbjct 688 CGTAT-AGCGGTGTTGTAACCGAAGAGTGTGATCCATACTTTGATAATACCGGATGCTCT 746
Query 747 CACCCGGGATGTGAACCCGCTTACCCTACACCAAAATGTGCAAGGAAATGTGTTAGCGGA 806
|||||||| |||||||| || || |||||||| | |||| |||||||| ||||||| |
Sbjct 747 CACCCGGGTTGTGAACCGGCATATCCTACACCGAGATGTTTGAGGAAATGCGTTAGCG-A 805
Query 807 -AACCAGCTTTGGCGTGAATCAAAACATTATGGTGTTAGTGCGTACAAGGTCAGAT-CTC 864
||| | || ||| | || || || ||||| |||| ||| | |||| || | || ||
Sbjct 806 CAACAAACTATGGAGCGAGTCGAAGCATTACAGTGTCAGTACATACACTGTTA-ATTCT- 863
Query 865 AC-CCTGATGACATTATGGCAGAAGTTTACAAAAATGGACCTGTTGAGGT-TGCCTTCAC 922
| || | || || |||||||| ||||| || |||||||||||||| || | | || ||
Sbjct 864 AGTCCACAAGATATCATGGCAGAGGTTTATAAGAATGGACCTGTTGAAGTCT-CTTTTAC 922
Query 923 TGTTTACGAGGACTTTGCGCATTACAAATCTGGAGTGTACAAGCACATAACAGG-TACTA 981
|||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| | |||
Sbjct 923 TGTTTATGAGGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGAT-CTA 981
Query 982 ACATTGGAGGTCATGCTGTTAAACTTATTGGCTGGGGAACTT-CTGATGACGGTGAAGAT 1040
||||||||||||||||||||||||||||||| ||||||||| | | || || ||||||
Sbjct 982 ACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCA-ACGAAGGCGAAGAT 1040
Query 1041 TATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATGATGGGTACTTCAAGATC 1100
||||||||| | ||||||||||||||| || |||||||||||||||| || |||| |||
Sbjct 1041 TATTGGTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATTTCATGATA 1100
Query 1101 AGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCA-GA 1159
||||||||||| || |||||||| |||||| ||| || |||||||| |||||| |
Sbjct 1101 AGGAGAGGAACTAATGAATGTGGAATTGAAGATGAACCAGTGGCTGGTTTGCCTTCAAG- 1159
Query 1160 CAGGAACGTAGTTAAAGGT 1178
|||||| || ||| |||||
Sbjct 1160 CAGGAATGT-GTTTAAGGT 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5