BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02310.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470192 jgi|Araly1|470192|fgenesh2_kg.1__146__AT1G02310.1 2017 0.0
> Ahg470192 jgi|Araly1|470192|fgenesh2_kg.1__146__AT1G02310.1
Length=1377
Score = 2017 bits (1092), Expect = 0.0
Identities = 1305/1402 (93%), Gaps = 37/1402 (3%)
Strand=Plus/Plus
Query 1 ATGTTGTGTCATTCTCTTTTCTTCAAGTCGGCAAAAG--T-----ATCACAATGTTAAAC 53
||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1 ATGTTGTGTCATTCTCTTTTCTTCAAGTCGGCAAACGTTTCACAAATCACAATGTTAAAC 60
Query 54 ATCTTACCGTTTTTCTTGTTCTTTCTTCCGTTTCTCATCGGAAACAACCGCATTTGCGTC 113
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTTGCTGTTTTTCTTTTTCTTTCTTCCGTTTCTCATCGGAAACAACCGCATTTGCGTC 120
Query 114 GCCGTAAAGACAGGCTTT-GTCGGGAGAAACGGCACGCAGTTCGTGTTGAACGGAGAACA 172
|||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCGCAAATACAGG-TTTCGTCGGGAGAAACGGCACGCAGTTCGTGTTGAACGGAGAACA 179
Query 173 AGTTTACTTAAACGGCTTCAATGCTTATTGGATGATGACCACCGCGGCTGACACGGCATC 232
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 180 AGTTTACTTAAACGGCTTCAATGCTTATTGGATGATGACCACCGCGGCTGATACGGCGTC 239
Query 233 TAAAGGAAGAGCTACCGTCACGACGGCGCTCCGGCAAGCCTCCGCGGTGGGAATGAACGT 292
||||||||||| ||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 240 TAAAGGAAGAGGTACTGTCACGACGGCGCTCCGGCAAGCATCTGCCGTGGGAATGAACGT 299
Query 293 CGCTAGGATTTGGGGTTTCAACGAAGGAGATTACATTCCTCTTCAGATCTCTCCTGGCTC 352
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CGCTAGGATTTGGGGTTTCAACGAAGGAGACTACATTCCTCTTCAGATCTCTCCTGGCTC 359
Query 353 CTATAGTGAAGACGTTTTCAAGGGGCTAGACTTTGTCGTCTATGAAGCTGGACGATTTAA 412
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 360 CTATAGTGAAGACGTTTTCAAGGGGCTAGACTTTGTCGTCTATGAAGCTGGAAGGTTTAA 419
Query 413 TATTAAATTGATAATTAGTTTAGTCAATAATTTCGAAGACTATGGAGGGAGAAAAAAGTA 472
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 AATTAAACTGATAATTAGTTTAGTCAATAATTACGAAGACTATGGAGGGAGAAAAAAGTA 479
Query 473 CGTGGAATGGGCCGGTTTAGATGAACCGGATGAATTCTACACAAACTCAGCTGTCAAGCA 532
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TGTGGAATGGGCCGGTTTAGATGAACCGGATGAATTCTATACAAACTCAGCTGTCAAGCA 539
Query 533 ATTCTACAAGAATCACGTGAAGACCGTGTTGACGAGGAAAAACACAATCACTGGTCGAAT 592
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 ATTCTACAAGAACCACGTGAAGACCGTGTTGACGAGGAAAAATACAATCACTGGTCGAAT 599
Query 593 GTACAAAGATGACCCTACCATCTTCTCATGGGAACTCATCAACGAACCTCGCTGCAATGA 652
||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 600 GTACAAAGACGACCCAACCATCTTCTCATGGGAACTCATCAATGAGCCTCGCTGCAATG- 658
Query 653 TTCCACTGCTTCGAATATTCTTCAGGATTGGGTGAAGGAAATGGCTAGTTATGTTAAGTC 712
| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 659 -T-CACTGGTTCGAATATTCTACAGAATTGGGTGAAGGAAATGGCTAGTTATGTTAAGTC 716
Query 713 CATAGACTCAAACCATTTGCTGGAAATAGGGCTTGAAGGGTTCTACGGAGAATCTATACC 772
||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| ||||
Sbjct 717 CATAGACTCAATCCATCTACTGGAAATAGGGCTTGAAGGGTTTTACGGAGAATCTTTACC 776
Query 773 GGAAAGAACGGTTTACAATCCCGGCGGAAGGGTCTTAACCGGTACAGATTTCATCACCAA 832
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 777 GGAAAGAACGGTTTACAATCCCGGCGGGAGGGTCTTAACCGGTACAGATTTCATCTCCAA 836
Query 833 TAACCAAATTCCGGATATCGATTTCGCCACTATCCATATCTACCCGGATTCTTGGCTACC 892
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TAACCAAATTCCCGATATCGATTTCGCCACTATCCATATCTACCCGGATTCTTGGCTACC 896
Query 893 ATTACAGAGCTCAAGAACAGGAGAACAAGATACATTTGTGGACAGATGGATCGGAGCACA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 ATTACAGAGCTCAAGAACAGGAGAACAAGATACATTTGTGGACAGATGGATCGGATCACA 956
Query 953 TATTGAAGACTGTGACAATATCATCAAGAAGCCTTTGCTGATAACAGAGTTTGGGAAATC 1012
||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 957 TATTGAAGACTGTAACAATATCATCATGAAGCCTTTACTGATAACAGAGTTTGGGAAATC 1016
Query 1013 TTCAAAGTACCCTGGTTTTAGCTTAGAGAAACGGAACAAGTTTTTCCAA-AGAGTTTACG 1071
||||||||| |||||||| ||||||||||||||||||||||||||| || |||||||| |
Sbjct 1017 TTCAAAGTATCCTGGTTTCAGCTTAGAGAAACGGAACAAGTTTTTC-AAGAGAGTTTATG 1075
Query 1072 ATGTTATCTACGACAGTGCAAGGGCTGGTGGTTCGTGTACTGGTGGTGTTTTCTGGCAGC 1131
|||| |||||| |||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 1076 ATGTCATCTACAACAGTGCAAGAACCGGTGGTTCGTGTACTGGTGGAGTTTTCTGGCAGC 1135
Query 1132 TTACGACCAATAGAACTGGTCTGTTAGGTGATGGGTACGAGGTCTTTATGCAAGCAGGTC 1191
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 TTACAACCAATAGAACTGGTCTGTTAGGTGATGGGTACGAGGTTTTTATGCAAGCAGGTC 1195
Query 1192 CTAATACTACTGCTCAGCTTATCGCCGACCAATCTAGTAAACTGAAAAACCTCAAGTATC 1251
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1196 CTAATACTACTGCTCAGCTTATCGCCGAGCAATCTAGTAAACTGAGAAACCTCAAGTATC 1255
Query 1252 CACCGTTGGTCACACATAGTGCAGAATGAAACAGTATAGATACAAACAGTAGATATTAGA 1311
|||| ||||||||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 1256 CACCATTGGTCACACATAGTGCAGAATGAAACAGTATAGATACAAA-A--A-A-A--AG- 1307
Query 1312 ATGTAAAAATAGGAAACATGTATAGTTGAATATGAACAAAAGCTAAATG--A-TATGTAG 1368
| ||| ||| ||| || | | |||||||||| |||||||||| | ||| |||
Sbjct 1308 --G-AAACATAT-AAA-AT--A--G---AATATGAACAGAAGCTAAATGCTAGTATATAG 1355
Query 1369 AATAGTTGAATGTCTTTTGATT 1390
||||||||||||||||||||||
Sbjct 1356 AATAGTTGAATGTCTTTTGATT 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5