BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02330.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918883 jgi|Araly1|918883|scaffold_100164.1 1399 0.0
> Ahg918883 jgi|Araly1|918883|scaffold_100164.1
Length=874
Score = 1399 bits (757), Expect = 0.0
Identities = 841/881 (95%), Gaps = 8/881 (1%)
Strand=Plus/Plus
Query 72 TCCGATAGTTTCTGGCTGCGATGCCGCCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 131
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCCGATAGTTTCTGTCTGCGATGCCACCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 60
Query 132 AGGAAGAAGAAGATAATGATGTAAACAAAGCCGCAATTTCAGAGGAAGAAGAGAAGCGAA 191
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 AGGAAGAGGAAGATAATGATGTAAACAAAGCCGCAATTTCAGATGAAGAAGAGAAGCGAA 120
Query 192 GATTGGCGTTAGAGGAGGTGAAGTTTTTGCAGAAGCTGCGAGAGAGGAAATTAGGTATCC 251
|||| ||||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||||
Sbjct 121 GATTAGCGTTGGAGGAGGTGAAGTTTCTGCAGAAGCTGAGAGAGAGAAAATTAGGGATCC 180
Query 252 CAGCTTTATCTTCTACGGCGCAATCTAGCATCGGAAAAGTGAAACCAGTGGAGAAAACTG 311
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CAGCTTTA---TCTACGGCGCAATCTAGCATCGGAAAAGCGAAACCAGTGGAGAAAACTG 237
Query 312 AAACTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 371
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGCTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 297
Query 372 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAACGGG 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAAAGGG 357
Query 432 G-AAGAAATATTGATGATGCAGAGGAGGTTGAGAACGAATTGAAGCGAGTGGAAGATGAG 490
| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 358 GGAAGAA-TATTGATGATGCAGAGGAAGTTGAGAATGAATTGAAGCGAGTGGAAGATGAG 416
Query 491 TTATATAAGATACCTGATCATCTTAAAGTCAAGAAGCGTAGCTCGGAAGAGAGCTCGACG 550
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 417 TTATATAAGATACCTGATCATCTTAAAGTTAAGAAGCGGAGCTCGGAAGAGAGCTCGACG 476
Query 551 CAGTGGACTACCGGAATAGCAGAAGTCCAACTCCCAATTGAATACAAGCTGAAGAACATT 610
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 CAATGGACTACCGGAATAGCAGAAGTCCAACTCCCAATCGAATACAAGCTGAAGAACATT 536
Query 611 GAAGAAACTGAAGCTGCCAAGAAGCTTTTGCAAGAGAGGAGACTTATGGGTCGGCCAAAG 670
|||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 537 GAAGAAACAGAAGCTGCCAAGAAGCTTCTGCAAGAGAGGAGGCTTATGGGTCGGCCAAAA 596
Query 671 TCAGAGTTTAGTATCCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 730
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCAGAGTTTAGCATTCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 656
Query 731 GCTGAGAAGCTTAGGAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 790
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCTGAGAAGCTTAGAAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 716
Query 791 GACGGTGAAGCAGCTAAACCTTCTACTAGCAGTAGTACTAATAATAATGCTGATTCAGGG 850
|| ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 717 GATGGTGAAGGTGCTAAACCTTCTACTAGCAGTAGTA--AC-AATAATGCTGATTCAGGG 773
Query 851 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTGGAACGATTTCGCAAGAGAGAGCGT 910
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 774 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTAGAACGATTTCGCAAGAGAGAGCGT 833
Query 911 AACCGTGTAATGCGAAGATAAAAGTAAAAACATGTTTGCAG 951
||||||||||||||||||||||||||||| |||||||||||
Sbjct 834 AACCGTGTAATGCGAAGATAAAAGTAAAAGCATGTTTGCAG 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5