BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02335.1 Length=832 Score E Sequences producing significant alignments: (Bits) Value Ahg470194 jgi|Araly1|470194|fgenesh2_kg.1__148__AT1G02335.1 1136 0.0 > Ahg470194 jgi|Araly1|470194|fgenesh2_kg.1__148__AT1G02335.1 Length=834 Score = 1136 bits (615), Expect = 0.0 Identities = 768/840 (91%), Gaps = 17/840 (2%) Strand=Plus/Plus Query 1 ATAGTTAAATAAAATTCATCTTTTCACGGATATATTTAATTTGGAGCCATGATGAATTCA 60 ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| Sbjct 1 ATAGTTAAATAAAATCCATCTTTTCAC-GA-ATATTTAATTTGGAGCCATGATGAATTTG 58 Query 61 AGAATTTCTATTATCATTGCGTTATCTTGCATTATGATCACTTCAATTCGTGCATACGAT 120 ||||||||||||||||||| ||||||||||| | | |||||||||| ||||||||||||| Sbjct 59 AGAATTTCTATTATCATTGTGTTATCTTGCA-T-T-ATCACTTCAACTCGTGCATACGAT 115 Query 121 CCCGACGCTCTTCAAGATCTCTGCGTTGCCGATAAATCTCACGGAACCAAACTGAATGGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 CCCGACGCTCTTCAAGATCTCTGCGTTGCCGATAAATCTCACGGAACCAAACTGAATGGA 175 Query 181 TTTCCGTGCAAGGAAACATTAAACATCACGGAGTCCGACTTCTTCTTCGCCGGAATCTCA 240 || || ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 176 TTCCCATGCAAGGAAACATCAAACATCACGGCGTCCGACTTCTTCTTCGCCGGAATCTCA 235 Query 241 AAACCCGCCGTCATAAACTCTACGATGGGTTCGGCCGTAACAGGAGCCAACGTGGAAAAG 300 ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 236 AAACCGGCCGTCATAAACTCTACGATGGGTTCCGCCGTGACAGGAGCCAACGTGGAGAAG 295 Query 301 ATCCCAGGCCTCAACACTCTCTCCGTCTCCTTAGCACGTATAGACTACGCGCCGGGAGGT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 296 ATCCCAGGCCTCAACACTCTCTCCGTCTCCTTAGCACGTATAGACTACGCGCCGGGTGGT 355 Query 361 TTAAACCCACCGCACACTCACCCACGCGCCACCGAAGTCGTCTACGTTCTAGAAGGAGAG 420 ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 356 TTAAACCCACCGCACACTCACCCACGCGCCACCGAAGTCGTCTACCTCCTCGAAGGAGAG 415 Query 421 CTTGAGGTTGGATTTATCACAACAGCGAATAAGCTTTTCACTAAAACCATAAAGATTGGT 480 || || |||||||||||||| || ||||||||||||||| |||||||||||||||||||| Sbjct 416 CTCGAAGTTGGATTTATCACGACGGCGAATAAGCTTTTCTCTAAAACCATAAAGATTGGT 475 Query 481 GAAGTTTTCGTTTTTCCAAGAGGGCTTGTGCATTTTCAAAAGAACAATGGGAAATCTCCC 540 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 476 GAAGTTTTCGTTTTTCCAAGAGGGCTTGTGCATTTTCAGAAGAACAATGGGAAATCTCCG 535 Query 541 GCGTCGGTTTTGTCGGCATTTAATAGTCAGTTGCCGGGAACGGCTTCTGTTGCGGCAACC 600 || || ||| |||| || ||||||||||||||||| ||||||| ||| |||||||||||| Sbjct 536 GCTTCTGTTCTGTCCGCGTTTAATAGTCAGTTGCCCGGAACGGTTTCCGTTGCGGCAACC 595 Query 601 CTATTTGCGGCAGAGCCGGCTTTGCCGGAAGATGTGTTAACTAAGACTTTTCAAGTGGGA 660 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 596 CTATTTGCGGCGGAGCCTGCTTTGCCGGAAGATGTGTTGACTAAGACTTTTCAGGTGGGA 655 Query 661 TCTAAGATGGTTGATAAGATTAAGGAAAGGCTTGCCACtaaaaaataattcataaaagtt 720 ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| Sbjct 656 TCTAAGATGGTTGATAAGATTAAGGAAAGGCTTGCGACTAAAAAATAATTCTTGAAAGTT 715 Query 721 taaaaaaaaaataaaaacatgaaaaTATAATG-TAACCGTTACCTAGAAAGATTTTATTT 779 || ||| |||||||| |||||| || | ||| | | | |||||||||| || | ||| Sbjct 716 TATCAAACAAATAAAA-CATGAATATGTTATGATGAGAGAAACCTAGAAAGGTTATCTTT 774 Query 780 AACACTACTGTA-TTGA-ATAAAAA--G--GT-G-T-T-ACTGTGATTATCTTGTTGATG 829 |||||||||||| |||| | ||||| | | | | | ||||||||||||||||||||| Sbjct 775 AACACTACTGTAATTGACAAAAAAAAAGAAGAAGGTATTACTGTGATTATCTTGTTGATG 834 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30765194019 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5