BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02335.1
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470194 jgi|Araly1|470194|fgenesh2_kg.1__148__AT1G02335.1 1136 0.0
> Ahg470194 jgi|Araly1|470194|fgenesh2_kg.1__148__AT1G02335.1
Length=834
Score = 1136 bits (615), Expect = 0.0
Identities = 768/840 (91%), Gaps = 17/840 (2%)
Strand=Plus/Plus
Query 1 ATAGTTAAATAAAATTCATCTTTTCACGGATATATTTAATTTGGAGCCATGATGAATTCA 60
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATAGTTAAATAAAATCCATCTTTTCAC-GA-ATATTTAATTTGGAGCCATGATGAATTTG 58
Query 61 AGAATTTCTATTATCATTGCGTTATCTTGCATTATGATCACTTCAATTCGTGCATACGAT 120
||||||||||||||||||| ||||||||||| | | |||||||||| |||||||||||||
Sbjct 59 AGAATTTCTATTATCATTGTGTTATCTTGCA-T-T-ATCACTTCAACTCGTGCATACGAT 115
Query 121 CCCGACGCTCTTCAAGATCTCTGCGTTGCCGATAAATCTCACGGAACCAAACTGAATGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCCGACGCTCTTCAAGATCTCTGCGTTGCCGATAAATCTCACGGAACCAAACTGAATGGA 175
Query 181 TTTCCGTGCAAGGAAACATTAAACATCACGGAGTCCGACTTCTTCTTCGCCGGAATCTCA 240
|| || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 176 TTCCCATGCAAGGAAACATCAAACATCACGGCGTCCGACTTCTTCTTCGCCGGAATCTCA 235
Query 241 AAACCCGCCGTCATAAACTCTACGATGGGTTCGGCCGTAACAGGAGCCAACGTGGAAAAG 300
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 236 AAACCGGCCGTCATAAACTCTACGATGGGTTCCGCCGTGACAGGAGCCAACGTGGAGAAG 295
Query 301 ATCCCAGGCCTCAACACTCTCTCCGTCTCCTTAGCACGTATAGACTACGCGCCGGGAGGT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 296 ATCCCAGGCCTCAACACTCTCTCCGTCTCCTTAGCACGTATAGACTACGCGCCGGGTGGT 355
Query 361 TTAAACCCACCGCACACTCACCCACGCGCCACCGAAGTCGTCTACGTTCTAGAAGGAGAG 420
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 356 TTAAACCCACCGCACACTCACCCACGCGCCACCGAAGTCGTCTACCTCCTCGAAGGAGAG 415
Query 421 CTTGAGGTTGGATTTATCACAACAGCGAATAAGCTTTTCACTAAAACCATAAAGATTGGT 480
|| || |||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 416 CTCGAAGTTGGATTTATCACGACGGCGAATAAGCTTTTCTCTAAAACCATAAAGATTGGT 475
Query 481 GAAGTTTTCGTTTTTCCAAGAGGGCTTGTGCATTTTCAAAAGAACAATGGGAAATCTCCC 540
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 476 GAAGTTTTCGTTTTTCCAAGAGGGCTTGTGCATTTTCAGAAGAACAATGGGAAATCTCCG 535
Query 541 GCGTCGGTTTTGTCGGCATTTAATAGTCAGTTGCCGGGAACGGCTTCTGTTGCGGCAACC 600
|| || ||| |||| || ||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 536 GCTTCTGTTCTGTCCGCGTTTAATAGTCAGTTGCCCGGAACGGTTTCCGTTGCGGCAACC 595
Query 601 CTATTTGCGGCAGAGCCGGCTTTGCCGGAAGATGTGTTAACTAAGACTTTTCAAGTGGGA 660
||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 596 CTATTTGCGGCGGAGCCTGCTTTGCCGGAAGATGTGTTGACTAAGACTTTTCAGGTGGGA 655
Query 661 TCTAAGATGGTTGATAAGATTAAGGAAAGGCTTGCCACtaaaaaataattcataaaagtt 720
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 656 TCTAAGATGGTTGATAAGATTAAGGAAAGGCTTGCGACTAAAAAATAATTCTTGAAAGTT 715
Query 721 taaaaaaaaaataaaaacatgaaaaTATAATG-TAACCGTTACCTAGAAAGATTTTATTT 779
|| ||| |||||||| |||||| || | ||| | | | |||||||||| || | |||
Sbjct 716 TATCAAACAAATAAAA-CATGAATATGTTATGATGAGAGAAACCTAGAAAGGTTATCTTT 774
Query 780 AACACTACTGTA-TTGA-ATAAAAA--G--GT-G-T-T-ACTGTGATTATCTTGTTGATG 829
|||||||||||| |||| | ||||| | | | | | |||||||||||||||||||||
Sbjct 775 AACACTACTGTAATTGACAAAAAAAAAGAAGAAGGTATTACTGTGATTATCTTGTTGATG 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30765194019
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5