BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02340.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333565 jgi|Araly1|333565|fgenesh1_pg.C_scaffold_1000130 749 0.0
> Ahg333565 jgi|Araly1|333565|fgenesh1_pg.C_scaffold_1000130
Length=840
Score = 749 bits (405), Expect = 0.0
Identities = 732/880 (83%), Gaps = 62/880 (7%)
Strand=Plus/Plus
Query 181 ATGGAATTGGGATGGAGAAACGACGTCGGATCACTTGCTGTGAAAGATCAGGGCATGATG 240
|||||| | |||||||||||||||||||||||| |||||||||||||||| | | | | |
Sbjct 1 ATGGAACTAGGATGGAGAAACGACGTCGGATCATTTGCTGTGAAAGATCATGACGT-A-G 58
Query 241 TCAGAAA-GAGCAAGAAGTGATGAAGATCGTCTAA-TCAACGGTC-TAAAATGGGGCTAC 297
||||| | ||||||||||||||||||||||||| || |||| | |||||||| |||||
Sbjct 59 -GAGAAATG-GCAAGAAGTGATGAAGATCGTCTAATTC-ACGG-CTTAAAATGGAGCTAC 114
Query 298 G---GCTACTTTGATCATGATCAAACTGATAATTATCTTCAGATTGTTCCAGAGATTCAT 354
| ||||||||||||||||||||| |||||| |||| || |||||||||||||| ||
Sbjct 115 GACAACTACTTTGATCATGATCAAACAGATAATCATCTCCAAATTGTTCCAGAGATCCAG 174
Query 355 AAAGAAGTAGAA-AA-T-GCGAAGGA-GGATTTATTGGTTGTTGTCCCTGATGAACATTC 410
|||| || |||| || | | || || ||||| ||||||| ||||||||||||||||||
Sbjct 175 AAAGTAGAAGAAGAAGTACCTAA-GACAGATTTGTTGGTTGCTGTCCCTGATGAACATTC 233
Query 411 TGAAACTGATGATCATCATCATATTAAAGATTTTTCAGAGAGATCAGATCATCGATTTTA 470
|||||||| |||||||||| | | || ||||||| | ||| | || ||| |
Sbjct 234 TGAAACTGGTGATCATCAT--GA-T---CATATTTCAGATA-ATC-G---AT--ATTAT- 279
Query 471 TCTGAGAAACAAACATGAGAACCCCAAA-AAACGTCGTATCCAGGTCTTAAGTAGTGATG 529
|| |||||||||||||||||| ||||| ||||||| ||||||||| |||||||
Sbjct 280 TC-GAGAAACAAACATGAGAA-ACCAAAGCGGCGTCGTAGCCAGGTCTT---CAGTGATG 334
Query 530 ATGAATCGGA-GGAGTTTACAAGAGAAGTTCCTTCAGTTACTCGAAAAGGTTCCaagaga 588
| ||||| || || |||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 335 AGGAATCAGATGG-GTTTACTAGAGAAGTTCCTTCAGTGACACGAAAAGGTTCCAAGAGA 393
Query 589 agaagaagagacgagaagaTGAGTAATAAGATGCGTAAGCTACAGCAACTCGTACCTAAT 648
||||| | || |||| ||||| ||||||||||||||| |||||||||||| |||||| ||
Sbjct 394 AGAAG-A-AG-CGAGGAGATGTGTAATAAGATGCGTACGCTACAGCAACTTGTACCTGAT 450
Query 649 TGTCACAAGACGGACAAGGTTTCGGTTCTCGA-CAAGACCATAGAGTATATGAAAAACCT 707
||||||||||||||||||||||| |||||||| | | |||| ||||||||||||| ||
Sbjct 451 TGTCACAAGACGGACAAGGTTTCAGTTCTCGATGATG-CCATTGAGTATATGAAAAGTCT 509
Query 708 TCAACTTCAACTTC-AGATGATGTCAACAG-TGGGGGTGAATCCTTATTTTCTTCCGGCG 765
||| |||||| ||| || ||||||||| | ||||| ||||||||||||||| ||||||
Sbjct 510 TCAGCTTCAA-TTCAAGGTGATGTCAA-TGATGGGGATGAATCCTTATTTTCCTCCGGCT 567
Query 766 ACATTAGGA-TTTGG---AATGCACAACCA-CATGCTGACGGCAATGGCT-TCGGCTCAC 819
| |||| || | ||| |||| ||||||| || | |||| || |||||| | || |||
Sbjct 568 ATATTA-GACTATGGAATAATGAACAACCACCA-GTTGACTGCGATGGCTGT-GG--CAC 622
Query 820 GGCCTAAATCCGGCGAATCACATGATGCCATCGCCGCTAATTCCGGCGTTAAATTGGCCA 879
|| | |||| ||||||||| |||||| | || | | | |||||||||| ||||||||||
Sbjct 623 GG-CAAAATGTGGCGAATCAAATGATGTCGTCACAGTTGATTCCGGCGTCAAATTGGCCA 681
Query 880 TTACCACCGTTTACTAATATTTCATTCCCACATTCATCTAGTCAATCTCTATTTCTTACA 939
|||||||||||||||||| ||||||||||||| ||| ||| |||| |||| |||||||||
Sbjct 682 TTACCACCGTTTACTAATTTTTCATTCCCACACTCACCTAATCAACCTCTCTTTCTTACA 741
Query 940 ACATCATCACCAGCTTCTTCTCCTCAGT-CTCTTCACGGTTTGGTTCCTTATTTCCCAAG 998
||| || ||||||||||||||||||| | | ||||||||||||||||||| ||| |||||
Sbjct 742 ACAACACCACCAGCTTCTTCTCCTCAATGC-CTTCACGGTTTGGTTCCTTGTTTTCCAAG 800
Query 999 TTTCTTGGATTTTTCTTCCCATGCGATGAGAAGACTATGA 1038
|||| | |||||||||||||||||||||||||||||||||
Sbjct 801 TTTCCTAGATTTTTCTTCCCATGCGATGAGAAGACTATGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5