BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02360.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918888 jgi|Araly1|918888|scaffold_100169.1 1273 0.0
> Ahg918888 jgi|Araly1|918888|scaffold_100169.1
Length=856
Score = 1273 bits (689), Expect = 0.0
Identities = 802/856 (94%), Gaps = 9/856 (1%)
Strand=Plus/Plus
Query 30 GATCCCTCTCTAAAAATGGCTCAACAACACTCTTTTCTCCTCTTATGCTTCTTCCTCTCA 89
|||||||| | |||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 8 GATCCCTC-C-AAAAATGGCT---CAGCACTCTATTCTCCTCTTATGCTTCTTCCTCTCA 62
Query 90 ATCTCTTATTTACTATCTTCC-GCCCAAACCGAAGCCACCTCAATCGAGAGATTAGTGCC 148
||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||
Sbjct 63 ATCTCTTATTTACTATCTTCCTG-CCAAACCGAAGCCACCGCAATCGAGAGATTGGTGCC 121
Query 149 AAGAGACCTCTACAACAAAATTTTCATCCACAAGGACAATACCGCTTGTCCCGCAAATGG 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 122 AAGAGACCTCTACAACAAAATTTTCATCCACAAGGACAATACCGCTTGTCCCGCAAACGG 181
Query 209 TTTCTACACTTACGAATCATTTGTCCAAGCGACGAGGCGGTTTCCGAGATTCGGGAGCGT 268
|||||||||||||||||| ||||| || |||||||||||||| |||||||||| ||||||
Sbjct 182 TTTCTACACTTACGAATCCTTTGTGCAGGCGACGAGGCGGTTCCCGAGATTCGCGAGCGT 241
Query 269 AGGAAGCCCCGTGACACAACGACTCGAAGTGGCTGCATTTTTGGCTCAGATTTCACACGA 328
||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 242 AGGAAGCCCCGCGACACAGCGGCTCGAAGTGGCTGCGTTTTTGGCTCAGATTTCACACGA 301
Query 329 GACGACCGGAGGATGGGCAACGGCACCAGACGGACCGTACGCTTGGGGATTATGCTTTAA 388
||| || |||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 302 GACAACAGGAGGATGGGCAACAGCGCCAGACGGACCGTACGCTTGGGGATTGTGCTTTAA 361
Query 389 AGAAGAAGTGAGTCCACAAAGCACTTATTGTGATTCTTCTGATACACAGTGGCCTTGTTT 448
|||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||
Sbjct 362 GGAAGAAGTGAGTCCACAAAGCAATTATTGTGATTCTTCTAATACGCAATGGCCTTGTTT 421
Query 449 CCCTAACAAGACTTATCAAGGAAGAGGTCCAATTCAACTATCGTGGAACTACAATTACGG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CCCTAACAAGACTTATCAAGGAAGAGGTCCAATTCAACTATCGTGGAACTACAATTACGG 481
Query 509 ACCGGCCGGTCGAGC-CTTAGGATTCGACGGTCTAAGGAATCCAGAAACGGTGTCAAATA 567
||||||||||||||| || |||||| || ||||||| |||||||||||||||||||||||
Sbjct 482 ACCGGCCGGTCGAGCTCT-AGGATTTGATGGTCTAAAGAATCCAGAAACGGTGTCAAATA 540
Query 568 ATTCAGTGATAGCTTTTCAAACAGCACTTTGGTTTTGGATGACGCCACAGAGTCCCAAAC 627
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 541 ATTCAGTGATAGCTTTCCAAACAGCTCTTTGGTTTTGGATGACGCCGCAGAGTCCGAAAC 600
Query 628 CTTCGTGCCATGACGTCATGATCGGAAAATACCGACCTACGGCGGCGGATTTGGCAGCTA 687
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 601 CGTCGTGCCATGACGTCATGATCGGAAAATACAGACCTACGGCGGCGGATTTGGCGGCTA 660
Query 688 ACCGGACCGGCGGGTTTGGTTTAACCACAAATATAATAAATGGCGGTTTAGAGTGTGGGA 747
|||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 661 ACCGGACCAGCGGTTTTGGTTTAACCACAAACATAATAAACGGCGGTTTAGAGTGTGGGA 720
Query 748 TTCCTGGAGACGGACGGGTCAATGACCGAATCGGGTTTTTTCAGAGATATACTGGGCTGT 807
||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 721 TTCCTGGAGACGGGCGGGTCAATGACCGGATCGGGTTTTTTCGGAGATATACTGGGCTGT 780
Query 808 TTAAAGTAGCAACTGGGCCGAATTTGGACTGTGAAAATCAAAGGCCTTATGCTTAAACAA 867
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TTAATGTAGCAACTGGGCCTAATTTGGACTGTGAAAATCAAAGGCCCTATGCTTAAACAA 840
Query 868 TTAATTTGGTTGACCC 883
| ||||||||||||||
Sbjct 841 TCAATTTGGTTGACCC 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5