BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02370.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470196 jgi|Araly1|470196|fgenesh2_kg.1__150__AT1G02370.1 2399 0.0
> Ahg470196 jgi|Araly1|470196|fgenesh2_kg.1__150__AT1G02370.1
Length=1703
Score = 2399 bits (1299), Expect = 0.0
Identities = 1481/1569 (94%), Gaps = 11/1569 (1%)
Strand=Plus/Plus
Query 126 CTCCAGCGGCGGCGAAT---GTCGTCGAAGCCTCTGTTTCTTCTCCGGCGGCGGAGAATG 182
|||| ||| |||||| | |||||||||||||||||||||||||| ||||||| |||||
Sbjct 76 CTCCGGCGTCGGCGACTGGCGTCGTCGAAGCCTCTGTTTCTTCTCCAGCGGCGGCGAATG 135
Query 183 GCGTCAGAA-CCTCTGTTGCTGCTCCGACGGTGGCTTCAAGGCAGCGAGAGTTGTACAAG 241
||||| ||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||
Sbjct 136 GCGTC-GAAGCCTCTGTTCCTGCTCCGACGGCGGCGTCAAGGCAGCGAGAGTTGTACAAG 194
Query 242 AAACTTTCTATGCTTAGTGTGACGGGAGGAACAGTGGCAGAGACGTTAAATCAGTTCATC 301
||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 195 AAACTGTCTAAGCTTAGTGTGGCGGGAGGGACAGTGGCAGAGACGTTAAATCAGTTCATC 254
Query 302 ATGGAGGGTATTACTGTCAGAAAAGACGATCTCTTTCGCTGTGCTAA-AACCCTTCGCAA 360
|||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||
Sbjct 255 ATGGAGGGTATTACGGTCAGAAAAGTCGATCTCTTTCGCTGTGCTAAGGA-CCTTCGCAA 313
Query 361 ATTCCGTCGACCTCAACACGCTTTTGAGATCTTTGATTGGATGGAGAAGAGGAAAATGAC 420
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 314 ATTCCGTCGACATCAACACGCTCTTGAGATCTTTGATTGGATGGAGAAGAGGAAAATGAC 373
Query 421 ATTTTCTGTGTCTGATCATGCAATTTGTTTGGATCTAATTGGAAAGACTAAAGGTTTAGA 480
||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||| ||||
Sbjct 374 ATTTTCTGTCTCTGATCATGCAATTCGTTTGGATCTAATTGCAAAGGCTAAAGGCCTAGA 433
Query 481 AGCAGCTGAGAACTACTTT-AACAACTTAGATCCTTCTGCAAAGAATCATCAGTCGACTT 539
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AGCAGCTGAGAACTA-TTTCAACAACTTAGATCCTTCTGCAAAGAATCATCAGTCGACTT 492
Query 540 ATGGGGCGCTCATGAACTGTTACTGTGTTGAACTTGAGGAAGAGAAAGCAAAGGCTCATT 599
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 493 ACGGGGCGCTCATGAACTGTTACTGTGTGGAACTTGAGGAAGAGAAAGCAAAGGCTCATT 552
Query 600 TTGAGATAATGGATGAGCTTAACTTTGTTAACAATTCGTTACCGTTTAATAACATGATGT 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TTGAGATAATGGATGAGCTCAACTTTGTTAACAATTCGTTACCGTTTAATAACATGATGT 612
Query 660 CTATGTACATGCGGTTGAGTCAACCGGAGAAGGTACCTGTGTTGGTTGATGCGATGAAAC 719
||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 613 CTATGTACATGAGGTTGAGTCAACCTGAGAAGGTACCTGTTTTGGTTGATGCGATGAAGC 672
Query 720 AGAGGGGTATATCTCCTTGTGGTGTCACTTACTCTATATGGATGCAGAGCTGTGGAAGTT 779
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 673 AGAGGGGTATATCTCCTTGTGGGGTAACTTACTCTATATGGATGCAGAGCTGTGGAAGTT 732
Query 780 TGAATGACTTAGATGGATTAGAGAAGATTATAGATGAGATGGGGAAAGACAGTGAAGCTA 839
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 733 TGAATGACTTAGATGGATTAGAGAAGATTATTGATGAAATGGGCAAAGACAGTGAAGCTA 792
Query 840 AAACCACTTGGAATACTTTCTCTAATCTGGCTGCAATCTACACTAAAGCTGGTCTTTACG 899
|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct 793 AAACCACTTGGAATACTTTCTCTAATCTAGCAGCAATCTTCACTAAAGCTGGTCTTTACG 852
Query 900 AGAAGGCGGATTCTGCACTGAAATCTATGGAGGAGAAAATGAATCCTAACAACCGTGATT 959
|||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 853 AGAAGGCGGAATCTGCGCTGAAATCTATGGAGGAGAAGATGAACCCTAACAACCGTGATT 912
Query 960 CCCACCATTTTCTCATGAGTTTGTACGCTGGAATCTCGAAAGGTCCTGAGGTTTATAGGG 1019
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 913 CCCACCATTTTCTCATTAGTTTGTACGCTGGAATCTCGAAAGCTCCTGAGGTTTATAGAG 972
Query 1020 TTTGGGAATCGCTGAAGAAGGCTCGTCCTGAGGTCAACAACTTGAGCTATCTAGTCATGT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 973 TTTGGGAATCGCTGAAGAAGGCTCGTCCTGAGGTCAACAACTTGAGCTATCTTGTCATGT 1032
Query 1080 TACAAGCGATGAGTAAACTAGGCGACTTAGATGGGATTAAGAAGATTTTCACAGAGTGGG 1139
||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1033 TACAAGCAATGAGTAAACTCGGCGACATAGATGGGATTAAGAAGATTTTCACAGAGTGGG 1092
Query 1140 AATCGAAATGCTGGGCTTACGATATGAGGCTGGCTAATATCGCGATTAACACGTATTTGA 1199
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1093 AATCAAAATGCTGGGCATACGATATGAGGCTGGCTAATATCGCGATCAACACGTATTTAA 1152
Query 1200 AAGGGAATATGTATGAAGAAGCAGAGAAGATTCTTGATGGTGCCATGAAAAAGTCTAAAG 1259
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1153 AAGGGAATATGTATGAAGAAGCAGAGAAGATTCTTGATGGTGCCATGGAAAAGTCTAAAG 1212
Query 1260 GTCCTTTCTCCAAAGCGAGACAGCTTCTGATGATCCATCTGTTGGAGAACGATAAAGCGG 1319
| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 1213 GACCTTTCTCCAAAGCGAGACAGCTTCTGATGATCCATCTGTTAGAGAATGGTAAAGCGG 1272
Query 1320 ATTTGGCTATGAAGCATTTGGAAGCAGCGGTTTCTGATTCTGCAGAGAACAAAGACGAAT 1379
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 1273 ATTTGGCTATGAAGCATTTGGAAGCAGCAGTTTCTGATTCCGCAGAGAACAAAGGCGAAT 1332
Query 1380 GGGGCTGGAGCTCAGAGCTGGTCAGCTTGTTTTTCCTTCACTTTGAGAAAGCTAAAGATG 1439
|| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||
Sbjct 1333 GGAGCTGGAGCTCAGAGCTAGTCAGCTTGTTTTTCCTTAACTTTGAGAGAGCTAAAGATG 1392
Query 1440 TTGATGGAGCGGAAGATTTCTGCAAGATTTTGTCGAATTGGAAACCTCTTGATTCTGAAA 1499
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1393 TTGATGGAGCAGAAGATTTCTGCAAGATTTTGTCAAATTGGAAACCTCTTGATTCTGAAA 1452
Query 1500 CTATGA-CATTTCTCATAAAGACTTATGCAGCAGCAGAGAAGACTAGTCCTGATATGCGA 1558
|||||| | ||||||||||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 1453 CTATGAGC-TTTCTCATAAAGACTTATGCAGCCGCAGAGAAAACTTGTCCTGATATGCGA 1511
Query 1559 GAGAGATTGTCTCAACAGCAGATCGAAGTAAGCGAGGAGATCCAAGACTTGCTTAAAACA 1618
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 GAGAGATTGTCTCAACACCAGATCGAAGTAAGCGAGGAGATCCAAGACTTGCTTAAAACA 1571
Query 1619 GTTTGTCCCTAAACTAAGTAATAAATGTGATTAGCACGTTATGTTTAAACTTGTGTCCCG 1678
|||||||||||||||||||||||| ||| ||| | || ||||||||||||||||||| ||
Sbjct 1572 GTTTGTCCCTAAACTAAGTAATAATTGTTATTTGAACATTATGTTTAAACTTGTGTCTCG 1631
Query 1679 TTTAGAGTT 1687
|||||||||
Sbjct 1632 TTTAGAGTT 1640
Score = 255 bits (138), Expect = 6e-67
Identities = 158/168 (94%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 9 CAACAAAAATGAATTTCCGTAATCTGATTGCTTCCGGTTCTCGCCTCGGCAAGAGGTTCT 68
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1 CAACCAAAATGAATTTCCGTAATCTGATTACTTCCGGTTCTCGCCTCGGCAAGAGATTCT 60
Query 69 GTGCAACGGTATTTGCTCCGGCGTCGGCGACTGGCATCGTCGAAGCCTCTGTTTCTTCTC 128
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GTGCAACAGTCTTTGCTCCGGCGTCGGCGACTGGCGTCGTCGAAGCCTCTGTTTCTTCTC 120
Query 129 CAGCGGCGGCGAATGTCGTCGAAGCCTCTGTTTCTTCTCCGGCGGCGG 176
||||||||||||||| |||||||||||||||| || ||||| ||||||
Sbjct 121 CAGCGGCGGCGAATGGCGTCGAAGCCTCTGTTCCTGCTCCGACGGCGG 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5