BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02380.1
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918891 jgi|Araly1|918891|scaffold_100172.1 1085 0.0
> Ahg918891 jgi|Araly1|918891|scaffold_100172.1
Length=736
Score = 1085 bits (587), Expect = 0.0
Identities = 687/736 (93%), Gaps = 3/736 (0%)
Strand=Plus/Plus
Query 286 GAGAAACTTAGTGTATAGGATGGATCAAATGTTATCAGGAGAACAAGATCTTGAAGTAGA 345
|||||| |||||| | |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 4 GAGAAAGTTAGTG--TGGGATGGATCAAATGTTTTCAGGAGAACAAGATCTTGAAGTGGA 61
Query 346 TATTGAAGCTGGTCGATCTGACGTTACACAAGAATCCACATCAGATACTGTTTCAGGCAA 405
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 62 TATTGAAGCTGGTCGATCTGATGTTACACAAGAATCCACATCAGATACTGTTTCAGGCAA 121
Query 406 TGGGGTCTGGAGTGAACGGGCGAATTTCGGTGTCTCTGAAAAGATTGCTGATGATCTGAG 465
||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 122 TGGGGTCTGGAGTGACCGGGTGAATTTCGGTGTGTCTGAAAAGATTGCTGATGATCTGAT 181
Query 466 CTATCCATTGATAAGAGACGAAAACCGAGTAGAAACTAGCAGTCAGAGTTTGGATCTTTC 525
||||||||| || |||||||||| || ||||||||||||||||| |||||||||||| |
Sbjct 182 CTATCCATTAATGGGAGACGAAAAGCGGGTAGAAACTAGCAGTCAAAGTTTGGATCTTGC 241
Query 526 AGAGAAAAAATGCGGTAATGGAAAGTTTAAGAAGTCGAGAAAAGCTTCAAAGCCTCCAAG 585
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 242 AGAGATAAAATGCGATAATGGAAAGTTTAAGAAGTCGAGAAAAGCTTCAAAGCCTCCGAG 301
Query 586 ACCTCCAAAAGGCCCTTCCTTGAGTGAGAATGACCGTAAGATCATGAGGGACATACAAGA 645
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 302 ACCTCCAAAAGGCCCTTCCTTGAGTGAGAACGACCGTAAGATCATGAGGGACATACAAGA 361
Query 646 GCTCGCTATGAGAAAGCGTGCAAGGATTGAAAGGATGAAAAAGTCCTTAAAAAGGTTGAA 705
||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 362 GCTAGCTATGAGAAAGCGAGCAAGGATTGAAAGGATGAAAAATTCCCTAAAAAGAATGAA 421
Query 706 AGCAGCCAAGACGTCACCATCATCTCCATGCATTACCATTTTCTCCATGATAATAACGGC 765
|||| ||||| |||||||||||||||||||||||| |||||| || ||||||||||| ||
Sbjct 422 AGCAACCAAGTCGTCACCATCATCTCCATGCATTAGCATTTTTTCGATGATAATAACAGC 481
Query 766 TATATTCTTCGCCTTTCTAGTCTTCCAAGGATTCTCCACAGGCAGTTCGAGTATGAATTC 825
| |||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||
Sbjct 482 TCTATTCTTCGCCTTTCTAGTCTTCCAAGGATTCTCTGCAAGCAGTTCGAGTTTGAGTTC 541
Query 826 GGACAAATCACCTGCACCAACAGTTTCACCTAACAACCAAATGATTTCAGTTCAGTTCTA 885
||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||
Sbjct 542 GGATAAATCACCTGCACCAACTGTTTCACCTAACAACCAATTGATTTCAGTTCACTTGTA 601
Query 886 CAATGATTTTGCTCCCGTTGAGCAAACCGATCCCAGCCCGACCACCTCATTAAGATACAC 945
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 602 CAATGATTTTGCTCCCGTTGAGCAAACCGATCCCAGCCCGACCACCTCATTCAGGTACAC 661
Query 946 GAGGAAGCGAATTTCGGGTGCAGAAGAAGAAGACTCGAGAGACGTTACTAGATGAGTTCT 1005
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GAGGAAGCGCATTTCGGGTGCAGAAGAAGAAGACTCGAGAGACGTTACTAGATGAGTTCT 721
Query 1006 CTGTTTTGGTCTTCTT 1021
|||||| |||||||||
Sbjct 722 CTGTTT-GGTCTTCTT 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41782717032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5