BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02390.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470198 jgi|Araly1|470198|fgenesh2_kg.1__152__AT1G02390.1 2532 0.0
Ahg943550 jgi|Araly1|943550|scaffold_604094.1 852 0.0
> Ahg470198 jgi|Araly1|470198|fgenesh2_kg.1__152__AT1G02390.1
Length=1785
Score = 2532 bits (1371), Expect = 0.0
Identities = 1669/1808 (92%), Gaps = 40/1808 (2%)
Strand=Plus/Plus
Query 1 TCGACATGCAGAGTCTAGATTCCAGCGACACCATATAATATAGTTATTAGAAAACGAGAG 60
||||||||||||||||||| ||||| ||| ||||||| |||||| ||| |||||||||||
Sbjct 1 TCGACATGCAGAGTCTAGAATCCAGTGACGCCATATACTATAGTAATTGGAAAACGAGAG 60
Query 61 GTCAAAACCATGTCCGGTAATAAGATCTCGACTCTTCAAGCTCTTGTCTTCTTCTTGTAC 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCAGAACCATGTCCGGTAATAAGATCTCGACTCTTCAAGCTCTTGTCTTCTTCTTGTAC 120
Query 121 CGGTTTTTCATTCTCCGTCGTTGGTGTCATCGTAGCCCTAAACAAAAATACCAAAAATGC 180
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 121 CGGTTTTTCATTCTCCGTCGTTGGTGTCATCGTAACCCTAAACAAAAATTCCAAAAATGC 180
Query 181 CCTTCTCACGGCCTCCACCAATATCAAGACCTATCGAATCACACTTTGATATTCAACGTC 240
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTCTCACGGCCTCCACCAAGCTCAAGACCTATCGAATCACACTTTGATATTCAACGTC 240
Query 241 GAAGGAGCTCTACTCAAATCAAACTCTTTATTCCCTTACTTCATGGTTGTGGCATTCGAA 300
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 GAAGGAACTCTACTCAAATCAAACTCTTTATTCCCTTACTTCATGGTTGTAGCTTTCGAA 300
Query 301 GCCGGAGGGGTGATAAGGTCACTTTTCCTCTTAGTTCTTTATCCATTTATAAGCTTGATG 360
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 301 GCCGGAGGGGTAATAAGGTCACTTTTCCTCTTCGTTCTGTATCCATTTATAAGCTTAATG 360
Query 361 AGCTACGAAATGGGCTTGAAGACGATGGTGATGCTGAGCTTCTTTGGAGTTAAAAAGGAA 420
|||||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||
Sbjct 361 AGCTACGAAATGGGTTTGAAGACGATGGTGCTGTTGAGCTTCTTCGGAGTTAAAAAGGAA 420
Query 421 AGCTTCCGAGTGGGGAAATCAGTTTTGCCTAAGTATTTTCTAGAAGATGTTGGGCTCGAG 480
|| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTTTTCGAGCCGGGAAAGCAGTTTTGCCTAAGTATTTTCTAGAAGATGTTGGGCTCGAG 480
Query 481 ATGTTCCAGGTTTTGAAAAGAGGAGGCAAGAGAGTTGCTGTGAGTGATTTACCACAAGTT 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ATGTTCCAGGTTTTGAAAAGAGGAGGCAAGAGAGTTGGTGTGAGTGATTTACCACAAGTT 540
Query 541 ATGATTGATGTATTCTTGCGAGATTACTTGGAGATAGAAGTTGTGGTCGGAAGAGACATG 600
||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 541 ATGATTGATGTGTTCTTGAGAGATTATTTGGAGATTGAAGTTGTGGTCGGAAGAGACATG 600
Query 601 AAAATGGTCGGTGGTTACTACCTAGGCATCGTGGAGGATAAGAAGAACCTTGAAATTGCT 660
|||||||||||||| |||||| |||||||| |||||||||||||||| | ||| |||||
Sbjct 601 AAAATGGTCGGTGGATACTACGTAGGCATCATGGAGGATAAGAAGAAACGTGAGTTTGCT 660
Query 661 TTTGATAAAGTGGTTCAAGAAGAAAGACTTGGTAGTGGTCGTCGTCTTATTGGCATCACT 720
|||||||||||||||||||||||||| ||| | |||||||||| | | ||||||||||||
Sbjct 661 TTTGATAAAGTGGTTCAAGAAGAAAGGCTTAGCAGTGGTCGTC-T-T-ATTGGCATCACT 717
Query 721 TCCTTTAACTCGCCAAGTCACAGATCTCTCTTCTCTCAATTTTGCCAGGAAATTTACTTC 780
||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 718 TCCTTCAACTCGCCAAGTCACAGATCTCTATTCTCTCAAATTTGCCAGGAGATTTACTTC 777
Query 781 GTCAGAAATTCAGACAAGAAAAGTTGGCAAACCCTACCACAAGATCAATACCCTAAACCA 840
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 778 GTCAGAAATTCAGACAAGAAAAGTTGGCGAATCCTACCACGAGATCAATACCCTAAACCA 837
Query 841 TTGATTTTCCACGATGGTCGTTTAGCCGTT-AAGCCAACACCTTTAAACACACTCGTATT 899
|||||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||
Sbjct 838 TTGATTTTCCACGATGGTCGTTTAGC-GATCAAGCCAACACCTTTAAACACATTCGTATT 896
Query 900 ATTCATGTGGGCCCCATTCGCCGCCGTCTTAGCCGCTGCAAGACTCGTCTTCGGCCTAAA 959
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 897 ATTCATGTGGGCCCCATTCGCCACAGCCTTAGCCGCTGCAAGACTCGTCTTCGGCCTAAA 956
Query 960 CTTACCTTACTCCCTAGCCAATCCCTTCCTCGCCTTTTCCGGTATCCACCTTACTCTCAC 1019
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 957 CCTACCTTACTCCCTAGCCAATCCTTTCCTCGCCTTTTCCGGTATCCACCTTACTCTCAC 1016
Query 1020 TGTCAACAACCACAACGACCTAATATCCG-CCGA-CAG-AAAAAGAGGTTGTCTCTTTGT 1076
|| || | |||||||| | | |||| | | ||||| |||||||||||||||
Sbjct 1017 CGTTAA-A--------GACCTAAT-TACTTCCGATC-GTAAAAA-AGGTTGTCTCTTTGT 1064
Query 1077 GTGTAACCATAGAACGTTATTGGACCCACTTTACATTTCATACGCTCTAAGAAAGAAAAA 1136
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GTGCAACCATAGAACGTTACTAGACCCACTTTACATTTCATACGCTCTAAGAAAGAAAAA 1124
Query 1137 CATGAAAGCCGTGACGTATAGTCTAAGCAGATTATCTGAGCTTCTGGCTCCGATCAAGAC 1196
||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1125 CATCAAAGCCGTTACATATAGTCTAAGCAGATTATCTGAGCTTCTAGCTCCGATCAAGAC 1184
Query 1197 CGTTAGATTGACTCGTGATCGAGTCAAAGATGGTCAAGCCATGGAGAAATTGCTGAGCCA 1256
||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||
Sbjct 1185 CGTTAGATTGACTCGTGATCGGGTCAAAGATGGTGAAGCCATGGAGAGATTGTTGAGCCA 1244
Query 1257 GGGAGATCTCGTGGTTTGTCCGGAAGGGACTACGTGTAGAGAGCCTTACTTGCTTCGGTT 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AGGAGATCTCGTGGTTTGTCCGGAAGGGACTACGTGTAGAGAGCCTTACTTGCTTCGGTT 1304
Query 1317 TAGTCCACTTTTCTCTGAGGTTTGTGACGTCATCGTACCTGTTGCTATTGACTCACACGT 1376
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1305 TAGTCCACTTTTCTCCGAGGTTTGTGACGTCATTGTACCTGTTGCTATTGACTCACACGT 1364
Query 1377 GACTTTCTTCTATGGCACGACGGCTAGTGGTCTTAAGGCATTTGATCCCATTTTCTTCCT 1436
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1365 GACTTTTTTCTATGGCACGACGGCTAGTGGTCTTAAGGCCTTTGATCCCATTTTCTTCCT 1424
Query 1437 TTTGAATCCTTTCCCTTCCTACACCGTCAAATTGCTTGACCCTGTCTCTGGAAGTAGC-T 1495
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1425 TTTGAATCCTTTTCCTTCCTACACCGTCCAATTGCTTGACCCTGTCTCTGGAAGTA-CAT 1483
Query 1496 CGTCCACGTGTCGAGGAGTCCCTGACAATGGAAAAGTTAACTTCGAGGTGGCTAATCACG 1555
|||||||||||| || | ||| ||| ||| |||||| || ||||| |||||||||||||
Sbjct 1484 CGTCCACGTGTCCAG-A-TCC-TGATAATAGAAAAGCGAAGTTCGATGTGGCTAATCACG 1540
Query 1556 TGCAGCATGAGATCGGGAATGCGTTGGGGTTTGAGTGCACCAACCTCACGAGAAGAGATA 1615
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1541 TGCAGCATGAGATTGGGAATGCGTTGGGGTTCGAGTGCACCAACCTCACGAGAAGAGATA 1600
Query 1616 AGTACTTGATCTTGGCCGGTAATAACGGAGTTGTCAAGAAAAAATAATTGATTT-GAGTA 1674
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1601 AGTACTTGATCTTGGCCGGTAATAACGGAGTTGTCAAGAAAAAATAAT-GATTTTGAATT 1659
Query 1675 -----GTTTATTTTCTTAATTAGGGCCTTTTTGTGTGACGTAC-ACTTTATTT---CT-T 1724
|||| ||||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 1660 TTTTTGTTTGTTTTCTTAATTAGGGCCTTTTTGTGTGACGTACCAATTTGTTTTATCTCT 1719
Query 1725 -ATAAGAttttttttCTATGATGTATCTATCtttttttAGTTAAATGTAATTATCTAATT 1783
|||||| |||| |||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1720 TATAAGAAACTTTT-CTATGATGTAACTATCTTTTTTT-GTTAAATGTAATTATCTTTTT 1777
Query 1784 GTGTGACC 1791
||||||||
Sbjct 1778 GTGTGACC 1785
> Ahg943550 jgi|Araly1|943550|scaffold_604094.1
Length=1605
Score = 852 bits (461), Expect = 0.0
Identities = 1263/1632 (77%), Gaps = 127/1632 (8%)
Strand=Plus/Plus
Query 81 TAAGATCTCGACTCTT-CAAGCTCTTGTC-TTCTTCTTGTACCGGTTTTTCATTCTCCGT 138
|||||| || | | || |||||||||||| ||| | || |||||| ||| || |||||
Sbjct 29 TAAGATTTC-AATATTCCAAGCTCTTGTCTTTC-TATTCTACCGG--TTT-ATCCTCCG- 82
Query 139 CGTTGGTGTCATCGTAGCCCTAAACAAAAATACCAAAAAT-GCCCTTCTCACGGCCTCCA 197
| | | |||| | |||||||| |||||||| ||||| |||||||| | ||||
Sbjct 83 -G--CG-AT-ATCGGAACCCTAAACCAAAATACC-AAAATGGCCCTTCT-TC--TCTCCT 133
Query 198 CCAATATCAAGACCTATCGA-ATCACACTTTGATATTCAACGTCGAAGGAGCTCTACTCA 256
|| | ||| |||||||| | ||||| ||||| |||||||| ||||||||||| ||||
Sbjct 134 CC-A-ATC-CGACCTATC-ACGCCACACATTGATCTTCAACGTAGAAGGAGCTCTTCTCA 189
Query 257 AATCAAACTCTTTATTCCCTTACTTCATGGTT-GTGGCATTCGAAGCCGGAGGGGTGATA 315
|||| ||||| | |||||||||||||| ||| || |||||||| || || ||||||| |
Sbjct 190 AATCCGACTCTCTCTTCCCTTACTTCAT-GTTAGTAGCATTCGAGGCGGGCGGGGTGACA 248
Query 316 AGGTCACTTT-TCCTCTT-AGTTCTTTATCCATTTATAAGCTTGATGAGCTACGAAATGG 373
|||||| ||| ||||||| | |||| |||||||| ||||||||||||||| | || ||||
Sbjct 249 AGGTCA-TTTATCCTCTTCA-TTCTCTATCCATTGATAAGCTTGATGAGCCATGAGATGG 306
Query 374 GCT-T-GAAGACGATGGTGATGCTGAGCTTCTTTGGAGTTAAAAAGGAAAGCTTCCGAGT 431
| | | ||| |||||| ||| |||||||||| || || ||||| ||||| || |||
Sbjct 307 G-TGTCAAAG-TGATGGTAATGGTGAGCTTCTTCGGGGTCAAAAAAGAAAGTTTTAGAGC 364
Query 432 GGGGAAATCAGTTTTGCCTAAGTATTTTCTAGAAGATGTTGGGCTCGAGATGTTCCAGGT 491
||||| | | ||||| ||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 365 GGGGAGAGCGGTTTTACCTAAATACTTTCTAGAAGATGTCGGGCTCGAGATGTTCCAAGT 424
Query 492 TTTGAAAAGAGGAGGCAAGAGAGTTGCTGTGAGTGAT--T-TACCACAAGTTATGATTGA 548
||||| |||||||| |||||| ||| ||||||||| | | || ||||||||||| ||
Sbjct 425 GTTGAAGAGAGGAGGGAAGAGAATTGGAGTGAGTGATGATCTTCCTCAAGTTATGATCGA 484
Query 549 TGTATTCTTGCGAGATTACTTGGAGATAGAAGTTGTGGTCGGAAGAGACATGAAAATGGT 608
| |||||| ||||||||||||||| || ||||||||||| ||| | ||||| | ||
Sbjct 485 AGGGTTCTTGAAAGATTACTTGGAGATTGACGTTGTGGTCGGGAGAAAAATGAAGGTCGT 544
Query 609 CGGTGGTTACTACCTAGGCATCGTGG-AGGATAAGAA-GAACCTTGAAATTGCT-TTTGA 665
|| ||||| || |||| ||| ||| ||| ||| || || | ||| ||| | |||||
Sbjct 545 TGGAGGTTATTATTTAGGGATCATGGAAGG-TAA-AACCAAACATGATCTTG-TCTTTGA 601
Query 666 TAAAG-TGGTTC-AAGAAGAAAGACTTGGTAGTGGTCGTCGTCTTATTGGCATCACTTCC 723
| || |||||| | |||| ||||| | |||||| | |||||||||||||||||
Sbjct 602 T-GAGTTGGTTCGTA-AAGAGAGACTAAACACCGGTCGT-G--TTATTGGCATCACTTCC 656
Query 724 TTTAACT-CGCCAAGTCA-CAGATCTCTCTTCTCTCAATTTTGCCAGGAAATTTACTTCG 781
|| || | | | ||| | ||| ||| |||||||| ||||||||||||||||| ||||
Sbjct 657 TTCAA-TACATCTCTTCATC-GATATCTATTCTCTCAGTTTTGCCAGGAAATTTATTTCG 714
Query 782 T-CAGAAATTCAGACAAGAAAAGTTGGCAAACCCTACCAC-AAGATCAATACCCTAAACC 839
| ||||| ||||||||| ||| |||||||||||||||| ||| ||||||||||||||
Sbjct 715 TGAAGAAA-TCAGACAAGCGAAGCTGGCAAACCCTACCACGAAG-CCAATACCCTAAACC 772
Query 840 ATTGATTTTCCACGATGGTCGTTTAGCCGTTAAGCCAACACCTT-TAAACACACTCGTAT 898
|||||||||||||||||| ||| | || | || ||||| ||| | ||||| | || |
Sbjct 773 ATTGATTTTCCACGATGGCCGTCTCGCAATCAAACCAAC-CCTAATGAACACTTTGGTCT 831
Query 899 TATTCATGTGGGCCCCATTCGCCGCCGTCTTAGCCGCTGCA---AGACTCGTCTTCGGC- 954
| |||||||||| || ||||| || | | |||||| ||| |||||| || || |
Sbjct 832 TGTTCATGTGGGGTCCTTTCGCAGCAG-C--AGCCGCAGCAGCCAGACTCTTCGTCT-CT 887
Query 955 CTAAACTTACCTTACTCCCTAGCCAATCCCT-TCCTCGCCTTTTCCGGTATCCAC-CTTA 1012
|| | | ||||||||| | | |||||| ||||| |||||||||| || || || |
Sbjct 888 CTTTGCATCCCTTACTCCTTCTC-AATCCCGATCCTCTCCTTTTCCGG-ATGCAGACTAA 945
Query 1013 CTC-TCACTGTCAACAAC----CA-C--AACGACCTAATATCC-GCCGACAGAAAAAGAG 1063
| | ||||| | || || || | || ||| || ||| | | || | ||| | |
Sbjct 946 C-CGTCACTAACGACTACGTTTCATCTCAAAAACCAAA-ATCAAGTCAAC-GCAAA-G-G 1000
Query 1064 GTTGTCTCTTTGTGTGTAACCATAGAACGTTATTGGACCCACTTTACATTTCATACGCTC 1123
|||||||||||||||||||||||| || || |||||||| || || || ||| ||| |
Sbjct 1001 -TTGTCTCTTTGTGTGTAACCATAGGACTTTGTTGGACCCTCTCTATGTTGCATTCGC-C 1058
Query 1124 T--AAGAAAGAAAAACATGAAAGCCGTGACGTATAGTCTAAGCAGATTATCTGAGCTTCT 1181
| || |||||||||||| ||| | || ||||||||| | || || |||| ||| ||||
Sbjct 1059 TTGAA-AAAGAAAAACATAAAAACTGTAACGTATAGTTTGAGTAGGGTATCCGAGATTCT 1117
Query 1182 GGCTCCGATCAAGACCGTTAGA-TTGACTCGTGATCGAGTCAAAGATGGTCAAGCCATGG 1240
||||||||||||||| || ||| || || |||||||| || | || |||||||||||||
Sbjct 1118 GGCTCCGATCAAGACGGTGAGACTT-ACCCGTGATCGGGTGAGTGACGGTCAAGCCATGG 1176
Query 1241 AGAAATTGCTGAGCC-AGGGAGATCTCGTGGTTTGTCCGGAAGGGACTACGTGTAGAGAG 1299
|||||||| ||| || | |||||||||||||||||||| ||||| || || ||||||||
Sbjct 1177 AGAAATTGTTGA-CCGAAGGAGATCTCGTGGTTTGTCCTGAAGGAACCACCTGTAGAGAA 1235
Query 1300 CCTTACTTGCTTCGGTTTAGTCCACTTT-T-CTCTGAGGTTTGTGACGTCATCGTACCTG 1357
|||||| ||||| ||||||| || |||| | | | |||||| ||||||||||||| || |
Sbjct 1236 CCTTACATGCTTAGGTTTAG-CC-CTTTGTTCACCGAGGTTAGTGACGTCATCGTTCCGG 1293
Query 1358 TTGCTATTGAC-TCACACGTGACTTTCTTCTATGGCACGACGGCTAGTGGTCTTAAGGCA 1416
| || | ||| ||| ||||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 1294 TGGCCGT-GACGTCAAACGTGACCTTCTTCTATGGTACAACGGCAAGTGGTCTTAAGGCC 1352
Query 1417 TTTGATCCCATT-TTCTTCCTTTTGAATCCTT-TCCCTTCCTACACCGTCAAATTGCTTG 1474
||||| ||| | |||||||| || |||||| ||| | |||||||| || |||| || |
Sbjct 1353 TTTGA-CCCGCTCTTCTTCCTCATGGATCCTTATCC-TACCTACACCATCCAATTTCTCG 1410
Query 1475 ACCCTGTCTCTGGAAGTAGCTCGTCCACGTGTCGAGGAGTCCCTGACAATGGAAAAGTT- 1533
|||||||||| || | || | ||||| | || | ||| ||| ||| || |||
Sbjct 1411 ACCCTGTCTCCGG---T-GC-C----ACGTGCCAAG-A-TCC-TGA---TGGGAA-GTTG 1454
Query 1534 AACTTCGAGGTGGCTAATCACGTGCAGCA-TGAGATCGGGAATGCGTTGGGGTTT-GAGT 1591
|| || |||||||| ||||| || ||| | |||||| ||||| ||||||| ||| ||||
Sbjct 1455 AAGTTTGAGGTGGCCAATCATGTTCAG-AGTGAGATTGGGAAGGCGTTGGA-TTTCGAGT 1512
Query 1592 GCACCAAC-CTCACGAGAAGAGATAAGTACTTGATCTTGGCCGGTAATAACGGAGTTGTC 1650
|||| || ||||| |||| ||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 1513 GCAC-AAGTCTCACTAGAAAAGACAAGTATTTGATCTTGGCCGGTAATAATGGAGTAGTT 1571
Query 1651 AAGAAAAAATAA 1662
|||||||| |||
Sbjct 1572 AAGAAAAATTAA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5