BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02400.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909901 jgi|Araly1|909901|Al_scaffold_0001_155 1640 0.0
> Ahg909901 jgi|Araly1|909901|Al_scaffold_0001_155
Length=990
Score = 1640 bits (888), Expect = 0.0
Identities = 957/991 (97%), Gaps = 2/991 (0%)
Strand=Plus/Plus
Query 164 ATGGTTTTGCCATCTTCAACACCGTTACAAACCACCGGAAAGAAGACGATATCCTCGCCG 223
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1 ATGGTTTTGCCATCTTCAACACCGTTACAAATCACCGGAAAGAAGACGAAATCCTTACCG 60
Query 224 GAATATAACTTCCCGGTGATCGATTTCTCCTTAAACGATCGGTCAAAACTATCGGAGAAG 283
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATATAGCTTTCCGGTGATCGATTTCTCCTTAAACGATCGGTCAAAACTATCGGAGAAG 120
Query 284 ATCGTAAAAGCCTGTGAGGTTAATGGGTTTTTCAAGGTGATAAACCATGGAGTTAAACCG 343
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ATCGTAAAAGCCTGTGAGGTTAATGGGTTTTTCAAGGTGATAAACCACGGAGTTAAACCG 180
Query 344 GAGATAATAAAGAGATTCGAGCATGAAGGAGAAGAGTTCTTTAATAAACCGGAATCAGAT 403
||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 181 GAGATAATATCGAGATTCGAGCATGAAGGAGAAGACTTCTTTGATAAACCGGAATCGGAT 240
Query 404 AAGCTACGAGCCGGTCCGGCGAGTCCGTTCGGTTACGGATGCAAGAACATCGGGTTCAAC 463
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 AAGCAACGAGCCGGTCCGGCGAGTCCTTTCGGTTACGGATGCAAGAACATCGGCTTCAAC 300
Query 464 GGCGATTTGGGTGAGCTTGAGTATCTTCTTCTCCACGCAAATCCGACAGCTGTCGCTGAT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCGATTTGGGTGAGCTTGAGTATCTTCTTCTCCACGCAAATCCGACAGCTGTCGCTGAT 360
Query 524 AAATCTGAAACTATATCTCATGATGATCCTTTCAAGTTCAGCTCGGCGACGAATGATTAC 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATCTGAAACTATATCTCATGATGATCCTTTCAAGTTCAGCTCGGCGACGAATGATTAC 420
Query 584 ATACGCACGGTTAGAGATTTGGCATGTGAGATCATTGATCTGACGATCGAGAATTTATGG 643
|||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 ATACGCGCGGTTAAAGATTTGGCATGTGAGATCATTGACCTGACGATCGAGAATTTATGG 480
Query 644 GGACAGAAGTCTAGCGAAGTGAGTGAGCTGATCAGAGACGTTCGTAGCGATTCGATCCTA 703
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGACAGAAGTCTAGTGAAGTCAGTGAGCTGATCAGAGACGTTCGTAGCGATTCGATCCTA 540
Query 704 CGGTTGAATCACTATCCACCAGCACCGTACGCGTTAAGTGGCGTTGGTCAAATAGGTTTC 763
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 CGGTTGAATCACTATCCACCAGCACCGTACGCGTTAAGAGGCGTTGGTCAAATAGGTTTC 600
Query 764 GGAGAACATTCTGACCCTCAGATCTTGACGGTGTTAAGATCCAACGACGTAGATGGACTT 823
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGAGCATTCTGACCCTCAGATCTTGACGGTGTTAAGATCCAACGACGTAGATGGACTT 660
Query 824 GAGATTTGCTCACGTGACGGCTTGTGGATCCCAATCCCA-TCTGACCCTACATGCTTCTT 882
|||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 661 GAGATTTGCTCACGTGACGGCTTGTGGACCCCAAT-CCAGTCTGACCCTACATGCTTCTT 719
Query 883 CGTATTGGTCGGTGACTGCCTTCAGGCATTGACGAATGGGAGATTCACTAGCGTGAGGCA 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGTATTGGTCGGTGACTGCCTTCAGGCATTGACGAATGGGAGATTCACTAGCGTGAGGCA 779
Query 943 TAGGGTTTTAGCAAACACAGCAAAGAAGCCACGTATGTCGGCGATGTACTTTGCAGCTCC 1002
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 780 TAGGGTTTTAGCAAACATAGCAAAGAAGCCACGTATGTCGGCAATGTACTTTGCAGCGCC 839
Query 1003 ACCGTTAGAGGCGAAAATATCACCGTTGCCAAAAATGGTGTCGCCGGAAAATCCAAGACG 1062
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 ACCGTTAGAGGCGAAAATATCACCGTTGCCAAAAATGGTGTCGCCAGAAAATCCAAGACG 899
Query 1063 TTATAATTCATTCACATGGGGTGACTACAAAAAAGCTACATACTCTCTCCGTTTAGATGT 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 GTATAATTCATTCACATGGGGTGACTACAAAAAAGCTACATACTCTCTCCGTTTAGGTGT 959
Query 1123 CCCTCGTCTCGAGTTTTTCAAGACTTTATAG 1153
||||||||| ||||| |||||||||||||||
Sbjct 960 CCCTCGTCTTGAGTTCTTCAAGACTTTATAG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5