BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02405.1

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470200 jgi|Araly1|470200|fgenesh2_kg.1__154__AT1G02405.1          431    3e-120


> Ahg470200 jgi|Araly1|470200|fgenesh2_kg.1__154__AT1G02405.1
Length=459

 Score =  431 bits (233),  Expect = 3e-120
 Identities = 388/457 (85%), Gaps = 34/457 (7%)
 Strand=Plus/Plus

Query  2    TTACAACATGTCGCCTAAAACTCGCCGATCGACGGATCTTGCGGCCACAATCCTCATGGC  61
            ||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct  1    TTACAACATGTCGGCTAAAACTCGCCGTTCGAAGGATCTTGCGGCCACATTCCTCATGGC  60

Query  62   TATCGTGATCCTCGCATCTCCGATCATAATCAACGCCGAAGATTCTTCAGCCGAAGTTGA  121
            |||||||||||||||||||||||||| |||||||||||||| ||     |   |      
Sbjct  61   TATCGTGATCCTCGCATCTCCGATCACAATCAACGCCGAAG-TT-----G---A------  105

Query  122  CGTTAACTGCATACCTTGTCTCCAAAATCAACCGCCTCCGCCTCCGTCTCCGCCACCTCC  181
            ||||||||||| ||||||||||||||||||||||||||||||            ||||||
Sbjct  106  CGTTAACTGCACACCTTGTCTCCAAAATCAACCGCCTCCGCC------------ACCTCC  153

Query  182  TTCTTGTACACCCTCCCCTCCTCCTCCGTCACCACCACCCCCGAAGAAATCTTCCTGTCC  241
            ||||||||||||| | ||||||||||||||||||||||| |||||||| || | ||| ||
Sbjct  154  TTCTTGTACACCCGCGCCTCCTCCTCCGTCACCACCACCGCCGAAGAAGTCCTACTGCCC  213

Query  242  ACCATCGCCTCTGCCGCCACCGCCACCTCCACCTCCACCTAATTACGTATTCACATATCC  301
            |||||||||||||||||| || |||||||||||||||  || |||| ||| | | |||||
Sbjct  214  ACCATCGCCTCTGCCGCCGCCACCACCTCCACCTCCATTTACTTACATATACGCGTATCC  273

Query  302  GCCG--GG-AGACTTGTACC-C--TATTGAAAATTACTATGGAGCGGCTGTGGCAGTAGA  355
            ||||  || ||||||||||| |  |||||| ||||||| ||||||||||| ||||| |||
Sbjct  274  GCCGCCGGGAGACTTGTACCACCCTATTGACAATTACTTTGGAGCGGCTGCGGCAGGAGA  333

Query  356  AAGCTTTTCGGTGATGAAGCTGTTCGTGTTTGGAGTTATGGTTTTTCTGATTCTTTGATT  415
            |||||| |||||| |||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct  334  AAGCTTCTCGGTGGTGAAGCTGGTCGTGTTTGGAGTTATTGTTTTTATGATTCTTTGATT  393

Query  416  ATGATCAGAAATTATTTATGTTGTTGTTTTCGAACTT  452
            ||||||| || ||||| | ||||||||||| ||||||
Sbjct  394  ATGATCACAATTTATTGA-GTTGTTGTTTTTGAACTT  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19192261267


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5