BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02410.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918895 jgi|Araly1|918895|scaffold_100176.1 1487 0.0
> Ahg918895 jgi|Araly1|918895|scaffold_100176.1
Length=904
Score = 1487 bits (805), Expect = 0.0
Identities = 859/886 (97%), Gaps = 0/886 (0%)
Strand=Plus/Plus
Query 130 AAATAATTTCTCTTCGGCCATGTCGTGGTCGAAAGCTTGTAGAGGAACTCGAATTTCTTC 189
|||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAATCATCTCTCTGCAGCCATGTCGTGGTCGAAAGCTTGTAGAGGAACTCGAATTTCTTC 61
Query 190 ATATTTAGAGAACCTTCATCGAACATCTCAGTATCCAAGGACTATTTTATGCTCTCGTTA 249
|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 62 ATATTTAGAGAACCTTCATCGAACATCTCAGTCTCCGAGGACTAGTTTATGCTCTCGTTA 121
Query 250 TTACACTCATGGAGCTTGTAAAAGCAATGAGCATTATCTCCGAAGCAAGAGAGTATTTTG 309
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 122 TTACACTCATGGAGCTTGTAAAGGCAATGAGCATTATCTCCGAAGCAAGAGAGTATTTTG 181
Query 310 GGGAAGCTCTTCTTCATGGAGCTTGAATTCTCACTCTGCTACTGCTAAATCGATGTTAGA 369
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGGAAGTTCTTCTTCATGGAGCTTGAATTCTCACTCTGCTACTGCTAAATCGATGTTAGT 241
Query 370 TAGTGCCCATCGCCAGTATTCTACTCACTCTCCATCGGAAACCAAATCACAGAAAATGCT 429
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 242 TAGTGCCCATCGCCAGTATTCTACGCAATCTCCAACGGAAACCAAATCACAGAAAATGCT 301
Query 430 CTATTACCTCACCGCTGTTGTCTTTGGTATGGTGGGGTTAACTTACGCTGCTGTGCCATT 489
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 302 CTATTACCTCACCGCTGTTGTCTTTGGTATGGTGGGGCTGACTTACGCTGCCGTGCCATT 361
Query 490 GTATAGAACATTCTGCCAAGCTACTGGATATGGAGGTACTGTTCAACGCAAAGAGACTGT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTATAGAACATTCTGCCAAGCTACTGGATATGGAGGTACTGTTCAACGCAAAGAGACTGT 421
Query 550 TGAGGAGAAGATTGCTAGGCATTCAGAATCTGGTACCGTCACTGAAAGGGAGATTGTGGT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 TGAGGAGAAGATTGCTAGGCATTCAGAATCTGGTACCGTCACTGAAAGGGAGATTGTCGT 481
Query 610 GCAGTTCAATGCTGATGTTGCAGATGGGATGCAGTGGAAGTTCACTCCAACACAAAGAGA 669
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 482 GCAGTTCAATGCTGATGTTGCAGATGGGATGCAATGGAAGTTCACTCCAACACAAAGAGA 541
Query 670 GGTTAGAGTAAAGCCAGGAGAAAGTGCACTCGCATTTTACACTGCTGAAAACAAAAGTTC 729
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 GGTTAGAGTAAAGCCAGGAGAAAGTGCACTCGCTTTTTACACTGCTGAAAACAAAAGTTC 601
Query 730 AGCTCCAATAACCGGAGTCTCGACATACAATGTCACTCCCATGAAGGCAGGAGTTTATTT 789
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 602 AGCTCCAATAACCGGAGTCTCGACATACAATGTCACTCCCATGAAGGCTGGAGTTTATTT 661
Query 790 CAACAAGATACAATGTTTTTGCTTTGAGGAGCAGCGACTCCTTCCTGGAGAGCAGATTGA 849
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 662 CAACAAGATACAATGTTTTTGCTTTGAGGAGCAGCGACTCCTTCCCGGAGAGCAAATCGA 721
Query 850 CATGCCGGTCTTCTTCTACATTGATCCTGAGTTTGAGACTGATCCAAGAATGGACGGAAT 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CATGCCGGTCTTCTTCTACATTGATCCTGAGTTTGAGACTGATCCAAGAATGGACGGAAT 781
Query 910 CAACAACTTGATATTGTCTTACACTTTCTTCAAAGTGTCAGAGGAAAATACTACAGAGAC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 782 CAACAACTTGATATTGTCTTACACTTTCTTCAAAGTGTCAGAGGAAAATACTACAGATAC 841
Query 970 GGTCAACAATAACAACTCTGTTCCAGTTCAAGAAACCAATTaaaaa 1015
||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 842 GGTCAACAATAGCAGCTCTGTTCCAGTTCAAGAAACCAAATAAAAA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5