BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02430.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909905 jgi|Araly1|909905|Al_scaffold_0001_159 881 0.0
Ahg898141 jgi|Araly1|898141|Al_scaffold_0005_2107 483 1e-135
Ahg470202 jgi|Araly1|470202|fgenesh2_kg.1__156__AT1G02420.1 169 3e-41
> Ahg909905 jgi|Araly1|909905|Al_scaffold_0001_159
Length=573
Score = 881 bits (477), Expect = 0.0
Identities = 545/577 (94%), Gaps = 8/577 (1%)
Strand=Plus/Plus
Query 1 ATGGGGACAG-CTCTGGGAAAGCCATTTGCCGGTTTTTTCCACCAAGAAGAATC-GAGGA 58
|||||||| | |||||||||||||| ||||||||||||||||| |||||||| | |||||
Sbjct 1 ATGGGGAC-GACTCTGGGAAAGCCACTTGCCGGTTTTTTCCACAAAGAAGAA-CTGAGGA 58
Query 59 TAGTGTTGTTCGGTCTCGACGCTGCCGGAAAATCATCAATAATGCACAAACTCAAAACCG 118
||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 59 TAGTGTTCTTCGGTCTCGACGGTACCGGAAAATCATCAATACTGCACAAACTCAAAACCG 118
Query 119 GAGAAACCCTTACCACAACCATGCCTACTATTGGAACGGATGTGGAAAGTGTAAAATACA 178
||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||
Sbjct 119 GAGAAACCCTTACCACAACCATGCCTACTGTTGGATTGAATGTGGAAAGTGTAAGATACA 178
Query 179 AGGATTCAAACTT-ACGCTTTTGGGAAATGGGCGGCCAACAATGTTACAAGTGGTTTCCA 237
||||||||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 AGGATTCAATCTTGA-GCTTTTGGGAAATGGGCGGCCAACAGTGTTACAAGTGGTTTCCA 237
Query 238 ATGA-CGAAACATGACTTCCAAGAAATAGCGGGGCTTGTGCTTGTAGTCGATAGCACAGA 296
|| | |||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 238 AT-ATCGAAACATTACTTCCAAGATATAGCGGGGCTTGTGCTTGTAGTCGATAGCACGGA 296
Query 297 CAGAGATCGAATAGAAGATGCGAAAGATTTTCTTAATGCGGTGATTGATGAGATACAAGG 356
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 297 CAGAGATCGAATAGAAGAGGCGAAAGATTTTCTTAACGTGGTGATTGATGAGATACAAGG 356
Query 357 GAGTGTACCGGACAATGTGGCTGTTCTTGTATTTGGAAACAAGCATGAAGTTCCTGGTGC 416
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 357 GAGTGTACCGGACAATGTGGCTGTTCTTGTATATGGAAACAATCATGAAGTTCCTGGTGC 416
Query 417 TATGTCTGCTTCTGAGATCAGTAACAAGCTTGATCTCACTTCTCTTCGTCaaaaaaaCTG 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 TATGTCTGCTTCTGAGATCAGTAACAAGCTCGATCTCACTTCTCTTCGTCAAAAAAACTG 476
Query 477 GCAGAGAAACTGGCATGTCCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCAGAGAAACTGGCATGTCCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGG 536
Query 537 ACTCGACTGGCTGTTGAAAAATGCTGAAAGAATGTAA 573
|||||||||||| ||||| ||||||||||||||||||
Sbjct 537 ACTCGACTGGCTATTGAACAATGCTGAAAGAATGTAA 573
> Ahg898141 jgi|Araly1|898141|Al_scaffold_0005_2107
Length=360
Score = 483 bits (261), Expect = 1e-135
Identities = 300/319 (94%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 256 CAAGAAATAGCGGGGCTTGTGCTTGTAGTCGATAGCACAGACAGAGATCGAATAGAAGAT 315
||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 43 CAAGAAATAGCAGGGCTTGTGTTTGTAGTCGATAGCACGGATAGAGATCGAATAGAAGAG 102
Query 316 GCGAAAGATTTTCTTAATGCGGTGATTGATGAGATACAAGGGAGTGTACCGGACAATGTG 375
|| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 103 GCCAAATATTTTCTTAACATGGTGATTGATGAGATACAAGGGAGTGTCCCGGACAATGTG 162
Query 376 GCTGTTCTTGTATTTGGAAACAAGCATGAAGTTCCTGGTGCTATGTCTGCTTCTGAGATC 435
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 163 GCTGTTCTTGTATATGGAAACAAGCATCAAGTTCCTGGTGCTATGTCTGCTTCTGAGATC 222
Query 436 AGTAACAAGCTTGATCTCACTTCTCTTCGTCa-aaaaaaCTGGCAGAGAAACTGGCATGT 494
|||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 223 AGTAACAAGCTTGATCTCACTTCTCTTCGT-ACTAAAAATTGGCAGAGAAACTGGCATGT 281
Query 495 CCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGGACTCGACTGGCTGTTGAA 554
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 282 CCAGAGCTCATGTGCATTCTGTGGTGATGGTTTACATGAAGGACTCGACTGGCTGTTGAA 341
Query 555 AAATGCTGAAAGAATGTAA 573
||||||||||||||| |||
Sbjct 342 AAATGCTGAAAGAATTTAA 360
> Ahg470202 jgi|Araly1|470202|fgenesh2_kg.1__156__AT1G02420.1
Length=1473
Score = 169 bits (91), Expect = 3e-41
Identities = 103/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 590 TTAACGCGGAATCTCTGTACTGAAAATAGCCATCTTTTGTATCAAGTTATTAACCTCATC 649
||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1473 TTATCGCGGAATCTCTGTACCGAAAATAGCCATCTTCTGTATCAAGTTATTAACCTCATC 1414
Query 650 GTGCTTATTTGCTAGCTCCATCAACAACTTGATCCTTTTAAACGAGACA 698
||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1413 ATGCTTATTTGCTAGCTCCATCAACAACTTTATCCTTTTAAATGAGACA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5