BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02450.1

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470205 jgi|Araly1|470205|fgenesh2_kg.1__159__AT1G02450.1          616    7e-176


> Ahg470205 jgi|Araly1|470205|fgenesh2_kg.1__159__AT1G02450.1
Length=448

 Score =  616 bits (333),  Expect = 7e-176
 Identities = 424/465 (91%), Gaps = 17/465 (4%)
 Strand=Plus/Plus

Query  4    TCTTCACTCTCCAAAATCAATCACTTTCTCTAAATGTATCCTAAACAATTTAGTTTATAC  63
            ||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||
Sbjct  1    TCTTCGCTCTCCAAAATCATTCACTTTCTC--AATGTATCCTAAACAATTTAATTTATAC  58

Query  64   AATTATTCCCTAGAGACCATGAGCAAGGATGAGAATGTGGAGAGCAAAGAGACGATCAGG  123
            ||||| ||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct  59   AATTACTCCATAGAGACCATGAACAAGGAAGAGAATGTGGAGAGCAAGGAGACGATCAGG  118

Query  124  GTTGATaagagagtaagagaagacgaagaagaggaagaagagaagaagaTTGATACGTTC  183
            || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  119  GTCGATAAGAGAGTAAGAGAAGACGAAGAGGAAGAAGAAGAGAAGAAGATTGATACGTTC  178

Query  184  TTTAAGCTTATCAAACACTATCAAGAAGCACGGAAACGTAGACGAGAAGAGTTAGCTGAA  243
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  179  TTTAAGCTTATCAAACACTATCAAGAAGCACGAAAACGTAGACGAGAAGAGTTAGCTGAA  238

Query  244  AATTCTGGCGTCGTGAGGAGGAAATCTAACGGCGGAGAAAGGTCCGGTATAGTAGTTCCG  303
            ||||| ||||  |||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct  239  AATTCCGGCGGGGTGAGGAGGAAATCTAACAGCGGAGAAAGATCCGGTCTAGTAGTTCCG  298

Query  304  GCGTTTCAGCCGGAGGATTTCTCTCAGTGTCGTACGGGTTTGAAGCCGCCATTGATGTTT  363
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct  299  GCGTTTCAGCCGGAGGATTTCTCTCAGTGTCGTACGGATTTGAAGCCGCCATTGATGATT  358

Query  364  GTTTCGGATCACAAGGAAGAAAATACAAAGGTGGAACAAGAAGAAGATCAAACAGAAGAG  423
            ||||||||||||||||||||| | ||||||||  || | ||||||||  |    ||| | 
Sbjct  359  GTTTCGGATCACAAGGAAGAAGACACAAAGGTT-AA-A-GAAGAAGA--A----GAA-A-  407

Query  424  CGAAACGAAGACAAGGCTTTAGATCTTAATCTTGCATTGTAGTAG  468
            | |   ||||| |||||||||||||||||||||||||||||||||
Sbjct  408  C-A---GAAGAGAAGGCTTTAGATCTTAATCTTGCATTGTAGTAG  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19726439513


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5