BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02460.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918899 jgi|Araly1|918899|scaffold_100180.1 2464 0.0
> Ahg918899 jgi|Araly1|918899|scaffold_100180.1
Length=1516
Score = 2464 bits (1334), Expect = 0.0
Identities = 1447/1503 (96%), Gaps = 1/1503 (0%)
Strand=Plus/Plus
Query 89 TTTTTAAGCCAAGAAAAATGTTAACTTCTACTTATAATCGCAACCAAGTCCTCGGTTTCA 148
||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||| || |||
Sbjct 5 TTTCTAAGCCAAG-AAAATGTTAACTTCTACTTATAATCGCAATCAAATCCTCTGTCTCA 63
Query 149 TGACACTTATTCTCACATTAATGTCTCTAAGCGAAGCTCGAAACCATCACCACAAAGAGA 208
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 64 TGACACTTATTCTCACATTAGTGTCTCTAACCGAAGCTCGAAACCATCACCACAAAGAGA 123
Query 209 AACACAAACATAATAACCATAACCACCACTCCTCTAAACCAAAGCCACCATCTTCCTCCA 268
||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 AACGCAAACACAATAACCATAACCACCACTCCTCTAAACCAAAGCCACCCTCTTCCTCCA 183
Query 269 TCTCTCAGCCTCCTACTCCTCCTCCGGGTCCCCCTGACTCACCGGCACCGTCACTGCCAC 328
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| || |||
Sbjct 184 TCTCTCAGCCTCCTACTCCTCCTCCGGGGCCCCCTGACTCACCCGCACCGTCAGTGTCAC 243
Query 329 CCTCACCTTCTGACGATCCTGCAGATGACAACAACGGAATCTACAACGTTAGAAAGTATG 388
|| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCACACCTTCTGACGAGCCTGGAGATGACAACAACGGAATCTACAACGTTAGAAAGTATG 303
Query 389 GTGCGGTGGGAGACGGTGAAACCGACGACACTGAAGCATTCAAAACGGCGTGGGACTCAT 448
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 304 GTGCGGTGGGAGACGGTGAAACCGACGACACTGAAGCATTCAAAATGGCTTGGGACTCAG 363
Query 449 CTTGTAACAACGAGAACAACACCGATTCAGTGTTGCTTGTTCCTTACGGCTATACATTCA 508
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 364 CTTGTAACAACGAGAACAACACCGATTCTGTGTTGCTTGTCCCTTACGGCTACACATTCA 423
Query 509 TGATTCAATCAACCATTTTCACTGGTCCTTGCCGCTCCTACCAATTTTTCCAAGTGGATG 568
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 424 TGATTCAATCAACTATTTTCACCGGTCCTTGCCGCTCTTACCAATTTTTCCAAGTGGATG 483
Query 569 GGACCATTGTAACACCCGATGGACCAGAGTCGTGGCCGAGCAATATAAGTAAGAGACAAT 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGACCATTGTAACACCCGATGGACCAGAGTCGTGGCCGAGCAATATAAGTAAGAGACAAT 543
Query 629 GGCTTGTGTTCTATAGAGTCAACGGAATGGCTTTGAAAGGCGAAGGAGTTATCGACGGCA 688
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 544 GGCTTGTGTTCTATAGAGTCAACGGAATGGCTTTGAAAGGCGACGGAGTTATCGACGGCC 603
Query 689 GGGGACAAAAGTGGTGGGATCTTCCCTGTAAACCTCACCGGAGTGTCAACAAATCAGCAA 748
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 604 GGGGACAAAAATGGTGGGATCTTCCCTGTAAACCTCACCGGAGTGTCAACAAATCTGCTA 663
Query 749 TTGTTACCGGTCCTTGCGATAGCCCCATTGCTTTGAGGTTCTTTATGAGCTCGAATCTAA 808
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTGTTGCCGGTCCTTGCGATAGCCCCATTGCTTTGAGGTTCTTTATGAGCTCGAATCTAA 723
Query 809 GGGTGGAAGGTCTACAGATAAAAAACAGCCCGCAGTTTCATTTCAGATTCGACGGATGTC 868
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GGGTGGAAGGTCTACACATAAAAAACAGCCCGCAGTTTCATTTCAGATTCGACGGATGTC 783
Query 869 AAGGAGTTCACGTTGAGTCCCTTCACATCACTGCTCCACCGTTAAGTCCCAACACCGATG 928
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 784 AAGGAGTTCACGTCGAGTCCCTTCACATCACTGCTCCGCCGTTAAGTCCCAACACCGACG 843
Query 929 GGATCCACATCGAAAACTCTAACTCCGTTACCATCTACAATTCCATTATCTCCAATGGAG 988
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 844 GCATCCACATCGAAAACTCTAACTCCGTTACCATCTACAACTCCATCATCTCCAATGGAG 903
Query 989 ATGATTGTGTATCGATTGGCTCCGGATCATACGACGTTGATATACGGAATCTAACTTGTG 1048
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 904 ATGATTGTGTATCGATTGGCTCCGGATCATACGATGTTGATATACGGAATCTCACTTGTG 963
Query 1049 GACCCGGTGGCCATGGAATTAGTATCGGAAGTTTGGGCAATCACAACTCACGAGCATGTG 1108
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 964 GACCCGGTGGCCATGGAATTAGTATCGGAAGTTTGGGCAATCACAACTCACGAGCATGCG 1023
Query 1109 TCTCAAATATAACGGTTAGAGATTCGGTCATAAAATACTCTGACAATGGAGTTAGGATCA 1168
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 1024 TCTCAAATATAACGGTTAGAGACTCGGTGATAAAATACTCTGACAATGGAGTTCGGATCA 1083
Query 1169 AAACATGGCAAGGTGGGTCCGGTTCGGTCTCAGGCGTGACATTCAACAACATCCACGTGG 1228
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1084 AAACATGGCAAGGTGGGTCCGGTTCGGTCTCAGGCGTGACGTTCAACAACATCCACGTGG 1143
Query 1229 ACTCAGTCCGTAACCCGATAATTATTGACCAATACTATTGTATGACCAAAGATTGTGCTA 1288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1144 ACTCAGTCCGTAACCCGATAATTATTGACCAATACTATTGCATGACCAAAGATTGTGCTA 1203
Query 1289 ACAAAACATCAGCGGTTTTTGTGTCTGATATTGCATACCAAGGCATCAAAGGAACTTACG 1348
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1204 ACAAAACATCTGCGGTTTTTGTATCTGATATTGCTTACCAAGGCATCAAAGGAACTTACG 1263
Query 1349 ATATTCGAAGTCCCCCGATGCATTTTGGATGCAGCGATGCAGTACCATGCACAAATCTAA 1408
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1264 ATATTCGAAGTCCCCCGATGCATTTTGGATGCAGCGACGCAATACCATGCACAAATCTAA 1323
Query 1409 CTCTTTCCGACATCGAATTGCTTCCTGCCAAAGGCGAAATCGTTTTGGATCCGTTTTGTT 1468
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1324 CTCTTTCCGACATCGAATTGCTTCCTGCCAAAGGCGAATTCGTTTTGGATCCGTTTTGTT 1383
Query 1469 GGAATGCTTATGGAATTGCGGAAGAGCTTTCGATTCCTCCGGTTTGGTGTCTCATGTCCG 1528
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1384 GGAATGCTTATGGAATTGCGGAAGAGCTTTCGATTCCTCCAGTTTGGTGTCTCATGTCCG 1443
Query 1529 ATCCTCCCAAGGGGTTGCAAGGATCTCTTGTTGACAAGTGTGGTTCATCGTGAGTTGCTT 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1444 ATCCTCCCAAGGGGTTGCAAGGATCTCTTGTTGACAAGTGTGGTTCATCGTGATTTGCTT 1503
Query 1589 CAT 1591
|||
Sbjct 1504 CAT 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5