BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02470.2
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470207 jgi|Araly1|470207|fgenesh2_kg.1__161__AT1G02470.2 1133 0.0
> Ahg470207 jgi|Araly1|470207|fgenesh2_kg.1__161__AT1G02470.2
Length=840
Score = 1133 bits (613), Expect = 0.0
Identities = 713/758 (94%), Gaps = 19/758 (3%)
Strand=Plus/Plus
Query 1 GATCAACTCTAAATCTCTTTCTCTCAAGATCAAAAGAGATGTCATCAATAGCTTCTGGCA 60
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 1 GATCAACTCTAAATCTCTTTCTCTCAAGAGCAAAAGAGATGACATCAATAGCTTCTGGTA 60
Query 61 CAGTTTCAACAACCAGATCGACAC-TTTGTTTCAGAAAAATCCCAAAGTCTGCAACTGTT 119
||||| ||||||||||||| || | |||||||| ||||||||||||||||||||||| ||
Sbjct 61 CAGTTCCAACAACCAGATCCAC-CGTTTGTTTCGGAAAAATCCCAAAGTCTGCAACTTTT 119
Query 120 TTATCTATGCTTCATCGA---------TCTTCTTCTTCTTCTCCACGAATGTTATTATTG 170
|||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 120 TTATCTATGCTTCATCGAGCTTCTTCTTCTTCTTCTTCTTCTCCAAGAATGTTATTATTG 179
Query 171 TTG---TCTTC-T--TCATCAGCTAACTCTGCAAAACTACTGAACTCTAACAATGG-TCT 223
||| ||||| | ||||||||||| ||||||||| |||| |||||||||||||| ||
Sbjct 180 TTGTCTTCTTCTTCCTCATCAGCTAAGTCTGCAAAAATACTAAACTCTAACAATGGTTC- 238
Query 224 CTTAATTTCCTCTTCTCCTAAACCTTTCAGACCCGTTATGCAATGGCAAGACGTCACCAG 283
|| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 239 CTCAATTTCTTCTTCTCCTAAACCCTTCAGACCCGTTATGCAATGGCAAGACGTCACCAG 298
Query 284 GGTAAAGATGGTGGTGGATGCACCAGCTTCCGTGGCTTACAAGTTATACGCAGATCGAGA 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 299 AGTAAAGATGGTGGTGGATGCACCAGCTTCCGTGGCTTACAAGTTATACGCAGATCGTGA 358
Query 344 AATGTTCCCCAAGTGGATGCCATTTTTGTCATCTGTTGAGGCAATGGAGGGTAGTCCAGA 403
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 AATGTTCCCCAAGTGGATGCCATTTTTGTCATCTGTTGAGGCAAAGGAGGGTAGTCCAGA 418
Query 404 CCTATCGCGTTATTTGGTAAAACTCGAGTCTTTTGGACAAAATATTGAATATCACTTTCT 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 CCTATCGCGTTATTTGGTAAAACTCGAGTCTTTTGGACAAAATATTGAATATCATTTTCT 478
Query 464 CGCAAAAAATTTACAGCCAATTCCAGATCGAAAGATACATTGGAGATCTATCGAAGGCTT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGCAAAAAATTTACAGCCAATTCCAGATCGAAAGATACATTGGAGATCTATCGAAGGCTT 538
Query 524 TGAAAATAGAGGCAGTGTTCGATTTTTCCCAAGAGGCCCTTCCTCGTGTTTAGTAGAGAT 583
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 539 TGAAAATAGAGGCAGTGTTCGATTTTTCCCAAGAGGACCTTCCTCGTGCTTAGTAGAGAT 598
Query 584 TAGTTTTTCATATGAAGTTCCAAATGCTTTTGCTCCAGTTGCATTTGCAATGAAACCGTT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TAGTTTTTCATATGAAGTTCCAAATGCTTTTGCTCCAGTTGCATTTGCAATGAAACCGTT 658
Query 644 TATGGAGAAGATTATTCGTGGAGGATTGGAACGTTTTGCTGCTTTCGTGAAGACCATTTA 703
|||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct 659 TATGGAGAAGCTTATTCGTGGAGGATTGCAACGTTTTGCTTCTTTCGTGAAAACCATTTA 718
Query 704 ACGCAAAAGTCAAGAATCATTACCAGAAAACTTACTTT 741
| |||||| |||||||||||||||||||||||||||||
Sbjct 719 AGGCAAAAATCAAGAATCATTACCAGAAAACTTACTTT 756
Score = 124 bits (67), Expect = 8e-28
Identities = 79/85 (93%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 769 TTTTTATGTAATTTATTTTTGAATATGTAATGTTGTTCATACTAATTTACTGAAAAGTAA 828
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 756 TTTTTATGTAATTTATTTTTGGATATGAAATGTTGTTCATACTAATTTACTGAAAAGTAA 815
Query 829 ATAATCTAAAGTCAATCTTTTCTAG 853
||| | ||| |||||| ||||||||
Sbjct 816 ATAGTTTAAGGTCAATTTTTTCTAG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5