BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02475.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311357 jgi|Araly1|311357|fgenesh1_pm.C_scaffold_1000137 870 0.0
> Ahg311357 jgi|Araly1|311357|fgenesh1_pm.C_scaffold_1000137
Length=660
Score = 870 bits (471), Expect = 0.0
Identities = 615/678 (91%), Gaps = 36/678 (5%)
Strand=Plus/Plus
Query 74 ATGTCTGTAGTAGCAATTAACATGAACACGATCAATCACTTGTCCAAAACCTGTAAAACC 133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGTCTGTAGTAGCAATTAACATGAACACGATCAATCACTTGTCCAAAACCTGTAAAATC 60
Query 134 CCAAATATCCAATCACCGATTTGCTTCGATCGCAAACCCTTTTCATATTCTCTCATTCCT 193
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CCAAATATCCAATCACCAATTTGCTTCGATCGCAAACCCTCTTCATATTCTCTCATTCCT 120
Query 194 CTGTTTCCAAAAACCCTAAATGGCTTCTCCTCTTACTCTTCTTCCGTTAGTCGCAGATCG 253
||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct 121 CTGTTTCCAAAAACCCTAAATGGCTTCTC-T-T-ACTCTTCTTCCGTTAGTCGGAGATCG 177
Query 254 AGATTCATCATTCCCAAGAGACGACGATTCTCTGTTTCCATGGAGTGGCAAGACTGCTCA 313
|| |||||||||||||||||||||| |||||||||||||||||| | | | |
Sbjct 178 AGTTTCATCATTCCCAAGAGACGACCATTCTCTGTTTCCATGGA-----A-G--T----A 225
Query 314 GTAAAGATGGAGGTCGATGTTCCAGTATCAGTAGCGTATAATTTCTACTTGGATCGTGAA 373
|| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 226 --AA-GATGGAAGTAGATGTTCCAGTCTCAGTAGCGTATAATTTCTACTTGGATCGTGAA 282
Query 374 TCTTTTCCTAAATGGATGCCTTTTATTTCATCTGTCCAGGTGTTAAAGGACAAGCCTGAT 433
|| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 283 TCGTTTCCTAAATGGATGCCTTTTATTTCTTCTGTCGAGGTGTTAAAGGACAAGCCTGAT 342
Query 434 CTATCACGTTGGTCACTCAAATACAATGCTTTTGGTCAAGACATTAAGTATTCTTGGCTT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTATCACGTTGGTCACTCAAATACAATGCTTTTGGTCAAGACATTAAGTATTCTTGGCTT 402
Query 494 GCTCGTAATCTTCAG-C------C--T-A--C---T-C-C-TAATCAGAAAATCCATTGG 535
||||| ||||| ||| | | | | | | | | |||||||||||||||||||
Sbjct 403 GCTCGGAATCTACAGGCAAGAATCCATCATTCACCTACTCCTAATCAGAAAATCCATTGG 462
Query 536 AGATCTCTTGAAGGTCTTCCTAATAAAGGCAGCGTTCGATTCTTTCCTAAAGGTCCTTCA 595
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 463 AGATCTCTTGAAGGTCTTCCTAATAAAGGCAGCGTTCGATTCTTCCCCAAAGGTCCTTCA 522
Query 596 TCGTGCATCGTAGAGCTAACCGTATCATATGAAGTCCCTGCCCTATTAACCCCTGTGGCA 655
|||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| || |||
Sbjct 523 TCGTGCATCGTAGAACTAACTGTATCATATGAAGTCCCTGCGCTATTGACCCCGGTTGCA 582
Query 656 TCGGTACTACGGCCTTTTATAGAAAGCTTGCTTAGAGGTGGACTTGAACGATTTGCAGCC 715
||||| || || |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 583 TCGGTGCTCCGACCTTTTTTAGAAAGCTTGCTTAGAGGTGGACTTGAAAGATTTGCAGCC 642
Query 716 TTGGCCAAAACTACTTAA 733
||||||||||||||||||
Sbjct 643 TTGGCCAAAACTACTTAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5