BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02500.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470210 jgi|Araly1|470210|fgenesh2_kg.1__164__AT1G02500.1 1999 0.0
Ahg943560 jgi|Araly1|943560|scaffold_604104.1 1439 0.0
Ahg934322 jgi|Araly1|934322|scaffold_402310.1 767 0.0
> Ahg470210 jgi|Araly1|470210|fgenesh2_kg.1__164__AT1G02500.1
Length=1458
Score = 1999 bits (1082), Expect = 0.0
Identities = 1158/1195 (97%), Gaps = 4/1195 (0%)
Strand=Plus/Plus
Query 330 GATTGTCCGTGACACCTGTCGCGCCATTGGATTTGTCTCTGATGATGTTGGTCTTGATGC 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GATTGTCCGTGACACCTGTCGCGCCATTGGATTTGTCTCTGATGATGTTGGTCTTGATGC 324
Query 390 TGACAAATGCAAAGTCCTAGTCAACATTGAGCAACAGAGCCCAGACATTGCTCAAGGAGT 449
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 325 TGACAAGTGCAAAGTCCTAGTCAACATTGAGCAACAGAGCCCAGACATTGCCCAAGGAGT 384
Query 450 TCACGGTCACTTCACCAAATGTCCTGAAGAAATTGGAGCCGGTGACCAAGGGCACATGTT 509
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 385 TCACGGTCACTTCACCAAATGTCCTGAAGACATTGGAGCCGGTGACCAAGGCCACATGTT 444
Query 510 TGGTTATGCCACTGATGAAACCCCTGAGTTAATGCCCCTGAGCCATGTTCTTGCCACCAA 569
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGGTTACGCTACCGATGAAACCCCTGAGTTAATGCCCCTGAGCCATGTTCTTGCCACCAA 504
Query 570 GCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGGTACTTGCGCCTGGCTAAGACCTGA 629
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 505 GCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGGTACTTGCGCTTGGCTAAGACCTGA 564
Query 630 CGGCAAAACCCAAGTCACTGTTGAGTACTACAATGACAAGGGTGCCATGGTCCCAATCCG 689
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 565 CGGCAAAACCCAAGTCACTGTTGAGTACTACAACGATAAGGGTGCCATGGTCCCAATCCG 624
Query 690 TGTCCACACAGTCCTCATCTCCACCCAACACGATGAAACTGTGACCAACGACGAAATTGC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 625 TGTCCACACAGTCCTCATCTCCACCCAACACGATGAAACTGTGACCAACGACGAAATCGC 684
Query 750 CCGTGACCTTAAGGAGCATGTCATCAAGCCAGTCATCCCAGAGAAGTACCTAGACGAGAA 809
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 685 CCGTGACCTTAAGGAGCATGTCATCAAGCCGGTCATCCCAGAGAAGTACCTAGACGAGAA 744
Query 810 AACCATCTTCCACTTGAACCCTTCAGGCCGATTCGTCATCGGTGGACCCCATGGAGACGC 869
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 745 AACCATCTTTCACTTGAACCCATCAGGCCGATTCGTCATCGGTGGACCCCATGGAGACGC 804
Query 870 TGGTCTCACCGGGCGTAAGATCATCATCGACACTTACGGTGGATGGGGAGCTCACGGAGG 929
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 805 TGGTCTCACCGGGCGTAAGATCATCATCGACACCTACGGTGGATGGGGAGCTCACGGAGG 864
Query 930 CGGTGCATTCTCAGGTAAAGACCCAACCAAGGTCGACAGAAGCGGAGCCTACATTGTGAG 989
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 CGGTGCATTCTCTGGCAAAGACCCAACCAAGGTCGACAGAAGCGGAGCCTACATTGTGAG 924
Query 990 ACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGGCTCGTAGGGCTCTTGTTCAGGTCTC 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 ACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGGCTCGTAGGGCTCTTGTTCAGGTCTC 984
Query 1050 ATACGCCATTGGAGTCCCTGAGCCATTGTCTGTCTTTGTGGACACTTATGAGACTGGATT 1109
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 985 ATACGCCATTGGAGTCCCTGAGCCATTGTCTGTCTTTGTGGACACTTACGAGACTGGTTT 1044
Query 1110 GATTCCAGACAAGGAGATACTAAAGATTGTGAAGGAGAGCTTCGACTTCAGACCAGGAAT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GATTCCAGACAAGGAGATACTAAAGATTGTGAAGGAGAGCTTCGACTTCAGACCAGGAAT 1104
Query 1170 GATGACAATTAACCTTGACCTAAAGAGAGGAGGAAACGGAAGGTTCTTGAAAACTGCGGC 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GATGACAATTAACCTTGACCTAAAGAGAGGAGGAAACGGAAGGTTCTTGAAAACTGCGGC 1164
Query 1230 TTACGGACACTTTGGAAGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCCACTCAA 1289
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GTACGGACACTTCGGAAGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCCACTCAA 1224
Query 1290 GTGGGACAAACCTCAAGCTTAAATTTTACCTACTCTGTTTCTGTCTTCATTCCACAAACC 1349
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 1225 GTGGGACAAACCTCAAGCTTAAATTTTACCTACTCTGTTTCTATCTTCCTTCCGCAAACC 1284
Query 1350 AATTATCTGCTCACTTTTTTATTTCTCTGTTTTTGTGGTTTATTGTGTTTATGTATCATT 1409
|||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct 1285 AATTATCTGCTCACGTTTTTATTTCTCTGTTTTTGTTTTTTAATGTGGTTATGTATCATT 1344
Query 1410 GTACTTGAGCTATTTCAATTGGGTGTTTGTTTTT--ATGGCGACTTTTACACGGCTTGGA 1467
||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1345 GTACTTGAGTTATTTCAATTGGGTGTTTGTTTTTTTATGGCGACTTTTACACGGGTTGCA 1404
Query 1468 GTAAGTTTCATGTTGTTCTTATATAATTATAACCATGAAAAATTAATATAAACTA 1522
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1405 GTAAGTTTCATGTTGTTCTTATATAATTAT--CCATGAAAAAATAATATAAACTA 1457
Score = 359 bits (194), Expect = 4e-98
Identities = 212/221 (96%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 65 AGAGATCTGAGTTTCTCTTCTTCGAGATCTGATCGCCGAATCTCATAATCTCCCATCGAA 124
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 45 AGAGATCTGAGTTTCTCTTCTTCGAGATCTGATCGCCGAATCTCATAATCTATCTTCGAA 104
Query 125 GCAGAATGGAGACTTTTCTATTCACATCTGAGTCTGTAAACGAGGGACACCCAGACAAGC 184
||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 105 GCAAAATGGAGACTTTCCTATTCACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGC 164
Query 185 TCTGTGACCAGATCTCTGATGCAGTCCTCGATGCCTGCCTTGAACAAGACCCTGACAGCA 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 165 TCTGTGACCAGATCTCTGATGCAGTCCTCGATGCCTGTCTTGAACAAGACCCTGACAGCA 224
Query 245 AAGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATG 285
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 225 AAGTTGCTTGTGAGACTTGCACCAAGACCAACATGGTCATG 265
Score = 76.8 bits (41), Expect = 4e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 CTCGTCTCAAACCGTTCCTTCTCTTTTAACACTTGTTCTTTTAA 44
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCGTCCCAAACCGTTCCTTCTCTTTTAACACTTGTTCTTTTAA 44
> Ahg943560 jgi|Araly1|943560|scaffold_604104.1
Length=1226
Score = 1439 bits (779), Expect = 0.0
Identities = 1050/1183 (89%), Gaps = 9/1183 (1%)
Strand=Plus/Plus
Query 127 AGA-ATGGAGACTTTTCTATTCACATCTGAGTCTGTAAACGAGGGACACCCAGACAAGCT 185
||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 17 AGAGATGGAGACTTTCCTTTTCACATCTGAGTCTGTGAACGAAGGACACCCAGACAAGCT 76
Query 186 CTGTGACCAGATCTCTGATGCAGTCCTCGATGCCTGCCTTGAACAAGACCCTGACAGCAA 245
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 77 TTGCGACCAGATCTCTGATGCAGTCCTCGATGCCTGCCTTGAGCAAGACCCTGACAGCAA 136
Query 246 AGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGTGAGATCACTAC 305
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 137 AGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTCGGTGAGATCACCAC 196
Query 306 CAAGGCTACTGTTGACTACGAGAAGATTGTCCGTGACACCTGTCGCGCCATTGGATTTGT 365
|||||| ||| |||||||||||||||||||||||||||| || ||| |||||||||| |
Sbjct 197 CAAGGCCACTATTGACTACGAGAAGATTGTCCGTGACACTTGCCGCTCCATTGGATTCAT 256
Query 366 CTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAAGTCCTAGTCAACATTGAGCAACA 425
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 257 CTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAAGTCCTTGTCAACATTGAACAACA 316
Query 426 GAGCCCAGACATTGCTCAAGGAGTTCACGGTCACTTCACCAAATGTCCTGAAGAAATTGG 485
||||||||||||||||||||| ||||||||||| ||||||||| | || ||||| |||||
Sbjct 317 GAGCCCAGACATTGCTCAAGGTGTTCACGGTCATTTCACCAAACGACCAGAAGACATTGG 376
Query 486 AGCCGGTGACCAAGGGCACATGTTTGGTTATGCCACTGATGAAACCCCTGAGTTAATGCC 545
||| ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 377 AGCTGGTGACCAAGGACACATGTTTGGTTATGCCACTGATGAAACCCCTGAGCTCATGCC 436
Query 546 CCTGAGCCATGTTCTTGCCACCAAGCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGG 605
|||||||||| ||||| |||||| | |||||||| || || |||||||| ||||||||
Sbjct 437 TTTGAGCCATGTCCTTGCAACCAAGATTGGTGCTCGTCTCACTGAAGTCAGGAAGAATGG 496
Query 606 TACTTGCGCCT-GGCTAAGACCTGACGGCAAAACCCAAGTCACTGTTGAGTACTACAATG 664
|||||| | | || ||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 497 AACTTGC-CGTTGGTTAAGACCAGATGGCAAGACCCAAGTCACTGTTGAGTACTACAACG 555
Query 665 ACAAGGGTGCCATGGTCCCAATCCGTGTCCACACAGTCCTCATCTCCACCCAACACGATG 724
|||| ||||| ||||| ||| | ||||||||||| ||||| ||||| ||||| |||||||
Sbjct 556 ACAACGGTGCTATGGTTCCAGTTCGTGTCCACACTGTCCTGATCTCAACCCAGCACGATG 615
Query 725 AAACTGTGACCAACGACGAAATTGCCCGTGACCTTAAGGAGCATGTCATCAAGCCAGTCA 784
|||| ||||||||||| || ||||| |||||||| ||||| || || || |||||| |||
Sbjct 616 AAACCGTGACCAACGATGAGATTGCACGTGACCTCAAGGAACACGTGATTAAGCCAATCA 675
Query 785 TCCCAGAGAAGTACCTAGACGAGAAAACCATCTTCCACTTGAACCCTTCAGGCCGATTCG 844
| |||||||| ||||| ||||| ||||||||||||||| | ||||| |||||||| ||||
Sbjct 676 TTCCAGAGAAATACCTTGACGACAAAACCATCTTCCACCTCAACCCATCAGGCCGGTTCG 735
Query 845 TCATCGGTGGACCCCATGGAGACGCTGGTCTCACCGGGCGTAAGATCATCATCGACACTT 904
| ||||| ||||| || || ||||||||| | ||||| |||||||||||||||||||| |
Sbjct 736 TGATCGGGGGACCACACGGTGACGCTGGTTTGACCGGACGTAAGATCATCATCGACACAT 795
Query 905 ACGGTGGATGGGGAGCTCACGGAGGCGGTGCATTCTCAGGTAAAGACCCAACCAAGGTCG 964
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |
Sbjct 796 ACGGTGGATGGGGAGCTCACGGAGGAGGTGCTTTCTCAGGCAAAGACCCAACCAAAGTTG 855
Query 965 ACAGAAGCGGAGCCTACATTGTGAGACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGG 1024
||||||| ||||| ||||| ||||| || ||||| ||||| || |||||||| || ||||
Sbjct 856 ACAGAAGTGGAGCTTACATCGTGAGGCAGGCAGCAAAGAGTGTGGTGGCTAATGGAATGG 915
Query 1025 CTCGTAGGGCTCTTGTTCAGGTCTCATACGCCATTGGAGTCCCTGAGCCATTGTCTGTCT 1084
|||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 916 CTCGTAGGGCTCTTGTCCAAGTCTCATACGCCATTGGTGTCCCCGAGCCATTGTCTGTCT 975
Query 1085 TTGTGGACACTTATGAGA-CTGGATTGATTCCAGACAAGGAGATACTAAAGATTGTGAAG 1143
| || |||||||| | || | || |||||||||||||||||||| || ||||| |||||
Sbjct 976 TCGTTGACACTTACG-GAACAGGGTTGATTCCAGACAAGGAGATCCTGAAGATCGTGAAA 1034
Query 1144 GAGAGCTTCGACTTCAGACCAGGAATGATGACAATTAACCTTG-ACCTAAAGAGAGGAGG 1202
|||| ||| || ||||||||||||||||||||||||||| ||| || | |||||||||||
Sbjct 1035 GAGACCTTTGATTTCAGACCAGGAATGATGACAATTAAC-TTGGACTTGAAGAGAGGAGG 1093
Query 1203 AAACGGAAGGTTCTTGAAAACTGCGGCTTACGGACACTTT-GGAAGAGACGACCCTGACT 1261
||| |||||||| |||||||| || || || ||||| ||| ||||||||||||||||| |
Sbjct 1094 AAATGGAAGGTTTTTGAAAACGGCAGCGTATGGACA-TTTCGGAAGAGACGACCCTGATT 1152
Query 1262 TCACCTGGGAAGTCGTCAAGCCACTCAAGTGGGACAAACCTCA 1304
|||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 1153 TCACTTGGGAGGTCGTGAAGCCACTCAAGTGGGACAAACCTCA 1195
> Ahg934322 jgi|Araly1|934322|scaffold_402310.1
Length=1289
Score = 767 bits (415), Expect = 0.0
Identities = 936/1185 (79%), Gaps = 46/1185 (4%)
Strand=Plus/Plus
Query 129 AATGGAGACTTTTCTATTCACATCTGAGTCTGTAAACGAGGGACACCCAGACAAGCTCTG 188
|||||| || || ||||| || ||||| || || || |||||||||||||||||||| ||
Sbjct 22 AATGGAAACCTTCCTATTTACCTCTGAATCCGTCAATGAGGGACACCCAGACAAGCTTTG 81
Query 189 TGACCAGATCTCTGATGCAG-TCCTCGATGCCTGCCTT-GAACAAGACCCTGACAGCAAA 246
||||||| | |||||||| | |||||||||| || ||| || ||||||||||| ||||||
Sbjct 82 TGACCAGGTTTCTGATGC-GATCCTCGATGCTTG-CTTAGAGCAAGACCCTGAAAGCAAA 139
Query 247 GTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGTGAGATCACTACC 306
|| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 140 GTGGCGTGTGAGACATGCACCAAGACCAACATGGTGATGGTGTTTGGTGAGATCACTACC 199
Query 307 AAGGCTACTGTTGACTACGAGAAGATTGTCCG-TGACACCTGTC-GCGCCATTGGATTTG 364
|| | || ||||| ||||||||||| | | ||| || | | | ||||| |||
Sbjct 200 TCTGCGAAAGTGGACTATGAGAAGATTGTTAGATC-CACTTG-CAGGGAGATTGGGTTTA 257
Query 365 TCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAAGTCCTAGTCAACATTGAGCAAC 424
|||| | |||||||||||||| |||||||||||||| || | || |||||||||||||
Sbjct 258 TCTCGGCCGATGTTGGTCTTGACGCTGACAAATGCAATGTTTTGGTTAACATTGAGCAAC 317
Query 425 AGAGCCCAGACATTGCTCAAGGAGTTCACGGTCACTTCACCAA-ATGTCCTGAAGAAATT 483
|||| || || |||||||| || ||||| ||||| || ||||| | | |||||||| |||
Sbjct 318 AGAGTCCTGATATTGCTCAGGGTGTTCATGGTCATTTGACCAAGAAG-CCTGAAGATATT 376
Query 484 GGAGCCGGTGACCAAGGG-CACATGTTTGGTTATGCCACTGATGAAACCCCTGAG-TTAA 541
|| || ||||| || ||| || |||||||| ||||| |||||||| || |||||| |||
Sbjct 377 GGTGCTGGTGATCA-GGGACATATGTTTGGGTATGCTACTGATGAGACTCCTGAGCTTA- 434
Query 542 TGCCCCTGAGC-CATGTTCTTGCCACCAAGCTCGGTGCTC-GCCTAACAGAAGTCAGAAA 599
||||| ||| | || || || || |||||||| |||||| || | || ||||| || ||
Sbjct 435 TGCCCTTGA-CTCACGTCCTAGCTACCAAGCTTGGTGCTAAGC-TCACTGAAGTGAGGAA 492
Query 600 GAATG-GTACTTGCGCC-TGGCTAAGACCTGACGGCAAAACCCAAGTCACTGTTGAGTAC 657
||| | |||||| || ||| | || ||||| || || ||||| ||||| || ||||||
Sbjct 493 GAACAAG-ACTTGC-CCATGGTTGAGGCCTGATGGTAAGACCCAGGTCACAGTGGAGTAC 550
Query 658 TACAATGACAAG-GGTGCCATGGTCCCAATCCGTGTCCACACAGTCCTCATCTCCACCCA 716
| || || | || || ||| | || || | |||||||| || |||||||| || ||
Sbjct 551 AAGAACGATG-GTGGAGCTATGATTCCGATTAGAGTCCACACGGTGCTCATCTCAACTCA 609
Query 717 ACACGATGAAACTGTGACCAACGACGAAATTGCC-CGTGACCTT-AAGGAGCATGTCATC 774
||| || |||||||| ||||||||||| ||||| | |||| || ||||||||||| |||
Sbjct 610 ACATGACGAAACTGTCACCAACGACGAGATTGCTGC-TGAC-TTGAAGGAGCATGTGATC 667
Query 775 AAGCCAGTCATCCCAGAGAAGTACCTAGACGAGAAAACCATCTTCCACTTGAACCCTTCA 834
||||| || ||||| | |||||||| ||||| || |||||||| ||||||||||| ||
Sbjct 668 AAGCCGGTTATCCCTGCTAAGTACCTTGACGATAACACCATCTTTCACTTGAACCCATCT 727
Query 835 GGCCGATTCGTCATCGGTGGACCCCATGGAGACGCTGGTCTCACCGGGCGTAAGATCATC 894
|| || || |||||||| || || ||||| || ||||| || || ||| | |||||||||
Sbjct 728 GGTCGTTTTGTCATCGGAGGGCCTCATGGTGATGCTGGACTTACTGGGAGGAAGATCATC 787
Query 895 ATCGACACTTACGGTGGATGGGGAGCTCACGGAGGCGGTGCATTCTCAGGTAAAG-ACCC 953
|| |||||||| ||||| ||||| ||||| || || ||||| |||||||| |||| ||||
Sbjct 788 ATTGACACTTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGG-AAAGGACCC 846
Query 954 AACCAAGGTCGACAGAAGCGGAGCCTACATTGTGAGACAAGCAGCTAAGAGCGTTGTGGC 1013
||||||||| |||||||| || ||||| || ||||| || || || ||||| | ||||
Sbjct 847 AACCAAGGTTGACAGAAGTGGTGCCTATATCGTGAGGCAGGCTGCAAAGAG--T-GTGG- 902
Query 1014 TAACGGGATGGCTCGTAGG--GCTCT-T-GTTCAGGTCTCATACGCCATTGGAGTCCCTG 1069
|| | | | |||||| | | ||| | | || ||||| |||||||||||||| |||||||
Sbjct 903 TAGCAGCAGGGCTCGCACGCCGCTGTATCGTGCAGGTATCATACGCCATTGGTGTCCCTG 962
Query 1070 AGCCATTGTCTGTCTTTGTGGACACTTATGAGACTGG-ATTGATTCCAGACAAGGAGATA 1128
|||| | || || ||||| ||||| || |||| || | || ||||||||||| ||
Sbjct 963 AGCCGCTCTCAGTGTTTGTTGACACCTACAAGACCGGGACC-ATCCCAGACAAGGATATC 1021
Query 1129 CTAAAGATTG-TGAAGGAGAGC-TTCGACTTCAGACCAGGAATGATGACAATTAACCTTG 1186
|| | ||| | ||||| ||| || |||||||| || ||||||||| | ||||||||||
Sbjct 1022 CTTGTG-TTGATCAAGGA-AGCATTTGACTTCAGGCCGGGAATGATGGCCATTAACCTTG 1079
Query 1187 ACCTAAAGAGAGGAGGAAACGGAAGGTTCTTGAAAACTGCGGCTTACGGACACTTT-GGA 1245
|||| ||||| ||||| ||| |||||| |||||| || || || || || ||| ||
Sbjct 1080 ACCTGAAGAGGGGAGGTAACTTCAGGTTCCAGAAAACCGCTGCGTATGGCCA-TTTCGGG 1138
Query 1246 AGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCCACTCAAG 1290
| || |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1139 CGTGATGACCCTGACTTCACTTGGGAGGTCGTCAAGCCGCTCAAG 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5