BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02510.1 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg470212 jgi|Araly1|470212|fgenesh2_kg.1__166__AT1G02510.1 1611 0.0 > Ahg470212 jgi|Araly1|470212|fgenesh2_kg.1__166__AT1G02510.1 Length=1081 Score = 1611 bits (872), Expect = 0.0 Identities = 1017/1085 (94%), Gaps = 18/1085 (2%) Strand=Plus/Plus Query 10 aagaagaagaag-agaaagaagagcgttttctaaatggaagaagagaaCCTTCTCAATGA 68 |||||||| ||| || |||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1 AAGAAGAATAAGAAG-AAGAAGAGCGTTTTATAAATGGAAGAAGAGACCCTTCTCAATGA 59 Query 69 GAACCTTCTCCATCCCAACGAGTCCTCACCGGAAGAAACTC-A---A-----GTCACCAC 119 ||||||||||| |||| ||||||||||||||| |||||||| | | |||||||| Sbjct 60 GAACCTTCTCCGTCCCCACGAGTCCTCACCGGGAGAAACTCAAGTCACCGCCGTCACCAC 119 Query 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCCATGATCCTCCTCTTGGTCTACTT 179 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCGATGATCCTCCTCTTGATCTACTT 179 Query 180 AACCTTCGGGGTTTGCACATACTCATTCTTTCGAGACCAATTCTCCGGAACCGAGACCAA 239 |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 180 AACCTTCGGGGTTTTCACTTACTCATTCTTTCGAGACCAGTTCTCCGGAACCGAGACCAA 239 Query 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTCTACAGTCGGTTACGGGGA 299 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTGTACAGTCGGTTACGGCGA 299 Query 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATCGTCTTGGTATCAACCGGCGT 359 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATTGTCTTGGTATCAACCGGCGT 359 Query 360 CGTATTTCTTGATTATCTACTCAACCGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 360 CGTATTTCTCGATTATCTACTCAACAGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419 Query 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479 Query 480 AGATGGCAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGATGGGAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539 Query 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGAGATTGGATTGGTTGGATTCGGT 599 ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| Sbjct 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGCGACTGGATTGGTTAGATTCGGT 599 Query 600 TTACTTGTCGGTTATCTCCGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACGGT 659 |||||||||| |||| || |||||||||||||||||||||||||||||||||||||| | Sbjct 600 TTACTTGTCGATTATTTCGGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACACT 659 Query 660 TGAAGGGAGAGGCTTCGCAGTGTTTTGGCTTCTTCTTTCAACTATTGCAATGGCTACTCT 719 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 660 TGAAGGGAGAGGTTTCGCAGTGTTATGGCTTCTTCTTTCAACTATTGCAATGGCTACTTT 719 Query 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCCCGAG 779 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCACGAG 779 Query 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAAAGTGGGAGGATTAGTGAGGATGATAT 839 |||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||| Sbjct 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAATGTGGAAAGATAAGTGAGGATGATAT 839 Query 840 AAAGCAGATCGTAAGAGAGTTCGAGAATCTTGAAGAAGTGCCATCAAGCGGATCATGACA 899 ||||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||||| Sbjct 840 AAAGCAGATCGTAAGAGAGTTTGAGAATCTTGAAAAAGTACCATCAAGCGGGTCGTGACA 899 Query 900 ATTTGCCAAAGATCACATTGCCCTAACTCTTGTCTGGTACT-AGATATGAAATTGCAGAG 958 |||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||| Sbjct 900 ATTTGCCAAAGATCACATTGCCCTAACTCTAGCCTGGTAATTAGATATGAAATTGCAGAG 959 Query 959 ATGCACATGGTTAGTTTTTCTTTTTGAATTTTAGTATAAAA-TGTATAGAAGAATCACAA 1017 || |||||||||| ||||||||||||||||||||| |||| ||||||||||||||| | Sbjct 960 CTGTACATGGTTAGCTTTTCTTTTTGAATTTTAGTAGAAAAATGTATAGAAGAATCATGA 1019 Query 1018 AAATGATGATGACGATGCTACTCTGTTTTGACCT-TGG-GACTTGAAAAGGAAGAAAATA 1075 ||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 1020 CAATGATGATGA---TGCTACTCTGTTTTGACCTCTTGCGACTTGAAAAGGAAGAAAATA 1076 Query 1076 CTCTG 1080 | ||| Sbjct 1077 CACTG 1081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5