BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02510.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470212 jgi|Araly1|470212|fgenesh2_kg.1__166__AT1G02510.1 1611 0.0
> Ahg470212 jgi|Araly1|470212|fgenesh2_kg.1__166__AT1G02510.1
Length=1081
Score = 1611 bits (872), Expect = 0.0
Identities = 1017/1085 (94%), Gaps = 18/1085 (2%)
Strand=Plus/Plus
Query 10 aagaagaagaag-agaaagaagagcgttttctaaatggaagaagagaaCCTTCTCAATGA 68
|||||||| ||| || |||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 AAGAAGAATAAGAAG-AAGAAGAGCGTTTTATAAATGGAAGAAGAGACCCTTCTCAATGA 59
Query 69 GAACCTTCTCCATCCCAACGAGTCCTCACCGGAAGAAACTC-A---A-----GTCACCAC 119
||||||||||| |||| ||||||||||||||| |||||||| | | ||||||||
Sbjct 60 GAACCTTCTCCGTCCCCACGAGTCCTCACCGGGAGAAACTCAAGTCACCGCCGTCACCAC 119
Query 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCCATGATCCTCCTCTTGGTCTACTT 179
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 120 CGTATCAAAATCGAAATGGACCATTCTTGTACTAGCGATGATCCTCCTCTTGATCTACTT 179
Query 180 AACCTTCGGGGTTTGCACATACTCATTCTTTCGAGACCAATTCTCCGGAACCGAGACCAA 239
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AACCTTCGGGGTTTTCACTTACTCATTCTTTCGAGACCAGTTCTCCGGAACCGAGACCAA 239
Query 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTCTACAGTCGGTTACGGGGA 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 240 TCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTGTACAGTCGGTTACGGCGA 299
Query 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATCGTCTTGGTATCAACCGGCGT 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATTGTCTTGGTATCAACCGGCGT 359
Query 360 CGTATTTCTTGATTATCTACTCAACCGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CGTATTTCTCGATTATCTACTCAACAGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAA 419
Query 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGA 479
Query 480 AGATGGCAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGATGGGAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTG 539
Query 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGAGATTGGATTGGTTGGATTCGGT 599
||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct 540 CGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGCGACTGGATTGGTTAGATTCGGT 599
Query 600 TTACTTGTCGGTTATCTCCGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACGGT 659
|||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 600 TTACTTGTCGATTATTTCGGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACACT 659
Query 660 TGAAGGGAGAGGCTTCGCAGTGTTTTGGCTTCTTCTTTCAACTATTGCAATGGCTACTCT 719
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 660 TGAAGGGAGAGGTTTCGCAGTGTTATGGCTTCTTCTTTCAACTATTGCAATGGCTACTTT 719
Query 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCCCGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 GTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCACGAG 779
Query 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAAAGTGGGAGGATTAGTGAGGATGATAT 839
|||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||
Sbjct 780 TGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAATGTGGAAAGATAAGTGAGGATGATAT 839
Query 840 AAAGCAGATCGTAAGAGAGTTCGAGAATCTTGAAGAAGTGCCATCAAGCGGATCATGACA 899
||||||||||||||||||||| |||||||||||| |||| ||||||||||| || |||||
Sbjct 840 AAAGCAGATCGTAAGAGAGTTTGAGAATCTTGAAAAAGTACCATCAAGCGGGTCGTGACA 899
Query 900 ATTTGCCAAAGATCACATTGCCCTAACTCTTGTCTGGTACT-AGATATGAAATTGCAGAG 958
|||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||
Sbjct 900 ATTTGCCAAAGATCACATTGCCCTAACTCTAGCCTGGTAATTAGATATGAAATTGCAGAG 959
Query 959 ATGCACATGGTTAGTTTTTCTTTTTGAATTTTAGTATAAAA-TGTATAGAAGAATCACAA 1017
|| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 960 CTGTACATGGTTAGCTTTTCTTTTTGAATTTTAGTAGAAAAATGTATAGAAGAATCATGA 1019
Query 1018 AAATGATGATGACGATGCTACTCTGTTTTGACCT-TGG-GACTTGAAAAGGAAGAAAATA 1075
||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1020 CAATGATGATGA---TGCTACTCTGTTTTGACCTCTTGCGACTTGAAAAGGAAGAAAATA 1076
Query 1076 CTCTG 1080
| |||
Sbjct 1077 CACTG 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5