BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02530.1
Length=3998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470213 jgi|Araly1|470213|fgenesh2_kg.1__167__AT1G02530.1 5725 0.0
Ahg490396 jgi|Araly1|490396|fgenesh2_kg.6__3530__AT4G01830.1 1334 0.0
Ahg473002 jgi|Araly1|473002|fgenesh2_kg.1__2956__AT1G28010.1 87.9 5e-16
Ahg934330 jgi|Araly1|934330|scaffold_402318.1 56.5 1e-06
> Ahg470213 jgi|Araly1|470213|fgenesh2_kg.1__167__AT1G02530.1
Length=3938
Score = 5725 bits (3100), Expect = 0.0
Identities = 3623/3878 (93%), Gaps = 26/3878 (1%)
Strand=Plus/Plus
Query 1 AGATTTCTTA-AAATC-CTTCTGATTTGTGTCAGCGCCGGAAAATGAACCGTGACGGCGC 58
|||||||||| ||| | ||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AGATTTCTTAGAAA-CTCTT-TGATTTCTGTCAGCGCCGGAAAATGAACCGTGACGGCGC 58
Query 59 CGGAGAAGGCGACTCTGTTTCACACGAA-CATTCAACATCTAAAACCGATGAAAAGGCCA 117
|||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |
Sbjct 59 CGGAGAAGGCGACTCTGTTTCACACGAACCA-TCAACATCTAAAAACGATGAAAAGGCGA 117
Query 118 AGACAGTTCCTCTCTACAAGCTATTTGCGTTTGCAGATTCCTTCGATGTGTTTTTGATGA 177
||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 118 AGACAGTTCCTTTCTACAAGCTATTTGCGTTTGCAGATTCCTTTGATGTGCTCTTGATGA 177
Query 178 TATGTGGCTCACTTGGAGCTATTGGGAATGGAGTGTGTTTACCTCTTATGACATTGTTGT 237
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 TATGTGGCTCAATCGGAGCTATTGGGAATGGTGTGTGTTTACCTCTTATGACATTGTTGT 237
Query 238 TTGGTGATCTCATCGATTCCTTTGGAAAAAATCAGAACAACAAAGACATTGTTGATGTTG 297
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 238 TTGGTGATCTCATCGATTCCTTTGGGAAAAATCAGAACAATAAAGACATTGTTGATGTTG 297
Query 298 TCTCAAAGGTTTGTCTTAAATTCGTCTACCTTGGACTTGGAAGACTTGGAGCAGCCTTTC 357
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 298 TCTCAAAGGTTTGTCTTAAATTTGTCTACCTTGGACTTGGAACACTTGGAGCAGCCTTTC 357
Query 358 TTCAGGTTGCTTGTTGGATGATTACTGGAGAGAGACAAGCCGCAAAGATAAGAAGTAAC- 416
||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||| ||
Sbjct 358 TTCAGGTGGCTTGTTGGATGATTACGGGAGAGAGACAAGCCGCGAGGATAAGAAGT-ACT 416
Query 417 TATCTGAAAACAATTCTGAGACAAGACATCGGATTCTTCGATGTT-GAAACAAACACAGG 475
||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||
Sbjct 417 TATCTGAAAACAATTCTGAGACAAGACATTGGATTCTTCGAT-TTGGAAACAAACACTGG 475
Query 476 AGAGGTTGTTGGTAGAATGTCTGGAGATACTGTTCATATTCAAGATGCCATGGGTGAGAA 535
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 476 AGAGGTTGTTGGTAGAATGTCTGGAGATACTGTTCTTATTCAAGATGCCATGGGTGAAAA 535
Query 536 GGTGGGGAAGTTTATTCAGCTGGTATCTACTTTCGTTGGCGGATTTGCTTTAGCTTTTGC 595
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 536 GGTTGGGAAGTTTATTCAGCTGGTATCTACTTTCGTCGGCGGATTTGTTTTAGCTTTCAT 595
Query 596 TAAAGGATGGTTGCTAACATTGGTTATGTTAACTTCGATTCCTTTTCTGGCTATGGCTGG 655
|||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 596 TAAAGGATGGTTACTAACATTGGTTATGTTAACTTCGATCCCGCTTCTGGCTATGGCTGG 655
Query 656 TGCAGCCATGGCGCTTTTAGTGACTCGAGCTTCTTCTCGGGGACAAGCCGCTTATGCAAA 715
||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGCAGCCATTGCGATTATAGTCACTCGAGCTTCTTCTCGGGGACAAGCCGCTTATGCAAA 715
Query 716 AGCAGCAACTGTTGTTGAACAGACAATCGGGTCTATCCGAACGGTTGCTTCTTTTACGGG 775
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 716 AGCAGCAACTGTTGTTGAACAGACTATCGGATCTATCCGAACGGTTGCTTCTTTTACGGG 775
Query 776 AGAGAAGCAAGCAATAAACAGCTACAAGAAGTACATAACATCGGCTTATAAATCAAGCAT 835
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 776 AGAGAAGCAAGCAATAAACAGCTACAAGAAGTTCATAACATCGGCGTATAAATCAAGCAT 835
Query 836 TCAACAAGGTTTCTCCACTGGTTTAGGACTTGGAGTAATGATCTAT-GTGTTCTTCAGCA 894
|||||||||||||||||| ||||||||||| ||||||||| ||| | ||||| |||||||
Sbjct 836 TCAACAAGGTTTCTCCACCGGTTTAGGACTAGGAGTAATGTTCT-TCGTGTTTTTCAGCA 894
Query 895 GCTATGCTTTGGCTATTTGGTTTGGTGGGAAGATGATACTCGAAAAAGGGTATACCGGTG 954
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCTATGCTTTGGCTATCTGGTTTGGTGGGAAGATGATACTCGAAAAAGGGTATACCGGTG 954
Query 955 GCTCTGTGATCAACGTGATCATCATTGTGGTTGCGGGTTCAATGTCGCTTGGGCAAACAT 1014
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 955 GCGCTGTGATCAACGTGATCATCATTGTGGTTGCGGGTTCAATGTCCCTTGGGCAAACAT 1014
Query 1015 CTCCATGTGTAACCGCATTTGCAGCAGGTCAAGCTGCAGCATATAAGATGTTTGAGACGA 1074
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct 1015 CTCCATGTGTAACCGCATTTTCAGCTGGTCAAGCTGCAGCATATAAGATGTTTCAGACGA 1074
Query 1075 TCAAAAGAAAGCCTTTGATTGATGCTTATGACGTAAATGGAAAGGTTCTTGGAGATATCC 1134
||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1075 TCAAACGAAAGCCTTTGATTGATGCTTATGACGTTAATGGAAAGGTTCTTGAAGATATCC 1134
Query 1135 GAGGAGACATTGAACTGAAAGATGTGCATTTCAGTTACCCCGCGAGGCCAGACGAGGAGA 1194
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1135 GAGGAGACATTGAACTTAAAGATGTGCATTTCAGTTACCCTGCGAGGCCAGACGAGGATA 1194
Query 1195 TATTTGATGGATTCTCTCTGTTTA-TCCCGAGCGGTGCAACAGCAGCACTGGTAGGAGAA 1253
|||| | |||||||||||||||| |||| |||||||||||||||||| | |||||||||
Sbjct 1195 TATTCAACGGATTCTCTCTGTTTATTCCC-AGCGGTGCAACAGCAGCATTAGTAGGAGAA 1253
Query 1254 AGTGGAAGTGGAAAATCTACGGTGATAAATTTGATTGAGAGGTTTTATGATCCGAAAGCC 1313
|||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||| ||
Sbjct 1254 AGTGGAAGTGGAAAATCTACCGTGATCAGTTTGATTGAGAGGTTTTATGATCCAAAATCC 1313
Query 1314 GGTGAAGTACTCATTGATGGAATTAATCTTAAGGAGTTTCAGTTGAAATGGATCAGAAGC 1373
|| | |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1314 GGCGCAGTACTAATTGATGGAGTTAATCTTAAGGAGTTCCAGTTGAAATGGATCAGAAGC 1373
Query 1374 AAAATCGGATTGGTCTGCCAAGAACCTGTTCTGTTTTCGTCGAGCATCATGGAGAATATC 1433
||||| ||||||||| | ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1374 AAAATTGGATTGGTCAGTCAAGAGCCGGTTCTGTTTTCGTCGAGCATCATGGAGAATATC 1433
Query 1434 GCCTACGGGAAAGAAAATGCAACGCTTCAAGAGATTAAAG-TAGCAACAGAGCTAGCAAA 1492
|||||||||||||||||||| ||||||||||||||||||| | | |||||||||| | ||
Sbjct 1434 GCCTACGGGAAAGAAAATGCGACGCTTCAAGAGATTAAAGCT-GTAACAGAGCTAACTAA 1492
Query 1493 TGCAGCAAAGTTCATAAATAACTTACCTCAGGGGTTAGATACAAAGGTAGGAGAGCACGG 1552
||| || ||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1493 TGCGGCGAAGTTCATAGATAACTTACCTCAGGGGTTGGATACATTGGTAGGAGAGCACGG 1552
Query 1553 GACACAGCTCTCGGGAGGACAGAAACAGAGGATAGCTATTGCAAGAGCTATTCTTAAAGA 1612
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1553 GACACAGCTCTCGGGAGGACAGAAACAGAGGATAGCGATTGCGAGAGCTATTCTTAAAGA 1612
Query 1613 TCCGCGGGTTTTGCTTCTGGATGAAGCAACAAGCGCGCTCGATACAGAATCCGAAAGAGT 1672
||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1613 TCCGCGGATTTTGCTGCTGGATGAAGCAACAAGCGCGCTCGATGCAGAATCCGAAAGAGT 1672
Query 1673 GGTTCAAGAGGCTTTAGATAGAGTCATGGTTAACCGGACTACGGTGGTGGTTGCGCATAG 1732
||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||
Sbjct 1673 TGTTCAAGAGGCTTTAGATAGAGTGATGGTTAACCGGACTACGCTGATTATTGCGCATAG 1732
Query 1733 ATTAAGCACGGTAAGAAATGCGGATATGATTGCAGTAATTCACAGCGGAAAAATGGTGGA 1792
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1733 GTTAAGCACGGTAAGAAATGCGGATATGATTGCAGTAATTCACCGCGGAAAAATGGTGGA 1792
Query 1793 AAAAGGTTCGCATTCTGAGTTGTTGAAAGATTCCGTGGGAGCTTATTCGCAGCTCATTCG 1852
||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 1793 AAAAGGTTCACATTCTGAGTAGTTGAAAGATTCTGAGGGAGCTTATTCGCAGCTCATTCG 1852
Query 1853 GTGT-CAAGAGATAAACAAGGGTCATGATGCAAAACCATCAGACATGGCTTCGGGATCAT 1911
|| | |||||||||||||||||| | |||| |||||||||||| | || |||||||||
Sbjct 1853 GT-TACAAGAGATAAACAAGGGTAACGATGTGAAACCATCAGACGTATCTGCGGGATCAT 1911
Query 1912 CTTTCCGGAATTCGAATTTGAACATATCAAGAGAGGGATCGGTTATCAGTGGTGGAACCT 1971
|||||||||| |||| |||||| | ||||| ||||||||||||||||||||| |||||||
Sbjct 1912 CTTTCCGGAACTCGAGTTTGAAAAAATCAATAGAGGGATCGGTTATCAGTGGCGGAACCT 1971
Query 1972 CGTCTTTTGGAAATAGCAGTCGTCATCATTCTTTGAATGTCCTTGGTTTATTCGCTGGAC 2031
|||| ||||||||||||| |||||||||||||||||||| ||||||||||| || ||||
Sbjct 1972 CGTCGGTTGGAAATAGCAGCCGTCATCATTCTTTGAATGTTCTTGGTTTATTTGCAGGAC 2031
Query 2032 TAGACCTTGGTAGCGGTAGCCAAAGAGTAGGCCAAGAGGAAACTGGAACGACGAGTCAAG 2091
||||||| ||||||||||||||| ||||||| |||||||||||||||||| | |||||||
Sbjct 2032 TAGACCTCGGTAGCGGTAGCCAACGAGTAGGTCAAGAGGAAACTGGAACGGCAAGTCAAG 2091
Query 2092 AACCGCTCCGAAAAGTATCACTCACCCGAATCGCAGCTCTAAACAAACCTGAGATCCCGG 2151
||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||| |
Sbjct 2092 AACCGCTCCCAAAAGTATCACTCACCCGAATTGCGGTTCTAAACAAACCTGAGATCCCTG 2151
Query 2152 TTCTCCTTCTT-GGAACTGTAGTAGCAGCAATCAATGGCGCGATTTTCCCGCTTTTCGGG 2210
|||||||| || |||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 2152 TTCTCCTT-TTAGGAACTGTAGCAGCAGCAATTAATGGCGCAATTTTCCCGCTTTTCGGG 2210
Query 2211 ATTCTGATTTCAAGAGTCATCGAAGCGTTCTTCAAACCAGCTGACCAATTAAAGAAAGAT 2270
|||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 2211 ATTCTGATTTCAAGAGTCATTGAAGCGTTCTTCAAACCAGTTGACCAACTAAAGAAAGAA 2270
Query 2271 TCAAGATTCTGGGCGATTATATTTGTAGCTCTGGGAGTAACTTCGTTGATTGTCTCACCG 2330
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271 TCAAGATTCTGGGCTATTATATTTGTAGCTCTGGGAGTAACTTCGTTGATTGTCTCACCG 2330
Query 2331 TCTCAAATGTATCTGTTTGCAGTAGCTGGAGGAAAACTTATACGACGAATTCAGTCAATG 2390
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 2331 TCTCAAATGTATCTGTTTGCAGTAGCTGGAGGAAAACTAATTCGACGAATTCAGTCAATG 2390
Query 2391 TGCTTTGAGAAAGCGGTTCACATGGAGGTTAGCTGGTTCGATGAGCCAGAGAACTCGAGT 2450
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 2391 TGCTTTGAGAAAGCGGTTCACATGGAAGTTGGGTGGTTCGATGAGCCAGAGAACTCGAGT 2450
Query 2451 GGTACAATGGGGGCAAGGCTCTCGACTGATGCAGCTTTGATTAGAGCTCTAGTAGGAGAT 2510
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2451 GGTACAATGGGGGCCAGGCTCTCGACTGATGCAGCTTTGATTAGAGCTCTAGTTGGAGAT 2510
Query 2511 GCATTGTCTTTAGCGGTTCAAAACGCTGCATCTGCTGCGTCTGGATTGATTATAGCGTTC 2570
||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2511 GCATTGTCTCTAGCTGTTCAAAATGCTGCATCTGCTGCGTCTGGATTGATTATAGCGTTC 2570
Query 2571 ACTGCGAGTTGGGAATTGGCGCTTATAATCTTAGTGATGCTTCCTCTTATTGGTATCAAT 2630
||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 2571 ACTGCGAGTTGGGAACTGGCGCTTATAATATTATTGATGATTCCTCTTATTGGTATCAAT 2630
Query 2631 GGCTTTCTTCAAGTCAAGTTTATGAAAGGATTCAGCGCCGACGCAAAGTCAAAGTATGAG 2690
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2631 GGCTTCCTTCAAGTCAAGTTTATGAAAGGATTCAGCGCCGACGCAAAGTCAAAGTATGAG 2690
Query 2691 GAGGCAAGTCAGGTAGCGAACGACGCGGTGGGGAGTATAAGAACAGTTGCATCTTTCTGC 2750
||||| |||||||||||||| || ||||| || ||||||||||||||||| |||||||||
Sbjct 2691 GAGGCGAGTCAGGTAGCGAATGATGCGGTAGGTAGTATAAGAACAGTTGCTTCTTTCTGC 2750
Query 2751 GCGGAGGAGAAAGTGATGCAGATGTATAATAAGCAATGTGAAGGTCCGATAAAAGATGGA 2810
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2751 GCGGAGGAGAAAGTGATGCAGATGTATAAGAAGCAATGCGAAGGTCCGATAAAAGATGGA 2810
Query 2811 GTAAAGCAAGGTTTCATCAGCGGATTAGGGTTTGGATTCTCCTTCTTCATTCTGTTTTGT 2870
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2811 ATCAAGCAAGGTTTCATCAGCGGATTAGGGTTTGGATTCTCTTTCTTCATTCTGTTTTGT 2870
Query 2871 GTCTACGCGACAAGCTTCTACGCGGCAGCTAGATTGGTTGAAGATGGCAAAACTACTTTC 2930
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 2871 TTCTACGCGACAAGCTTCTACGCGGCGGCTAGATTGGTTGAAGATGGCAAGATTACTTTC 2930
Query 2931 ATTGATGTTTTCCAGGTGTTTTTCGCGTTAACCATGGCAGCTATTGGAATTTCTCAGTCG 2990
| ||||||||||||| | ||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 2931 AATGATGTTTTCCAGATATTTTTTGCGTTAACAATGGCAGCGATTGGGGTTTCTCAGTCG 2990
Query 2991 AGTACTTTCGCTCCAGATTCAAGCAAAGCCAAGGTC-GCAGCTGCTTCAATCTTCGCGAT 3049
|||||||| ||||||||||| |||||||| |||| | ||||||||||| ||||| || ||
Sbjct 2991 AGTACTTTTGCTCCAGATTCGAGCAAAGCTAAGG-CTGCAGCTGCTTCGATCTTTGCAAT 3049
Query 3050 CATCGATAGAAAATCAAAGATAGACTCGAGCGATGAGACAGGGACAGTGTTGGAGAACGT 3109
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3050 CATCGATAGAAAATCGAAGATAGACTCGAGCGATGAGTCAGGGACAGTGTTGGAGAACGT 3109
Query 3110 TAAGGGAGATATTGAGCTTCGTCACTTAAGCTTCACTTATCCAGCAAGACCAGGCATTCA 3169
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 3110 TAAGGGAGATATTGAGCTGCGTCACTTAAGCTTCACTTATCCAGCAAGACCAGACATTCA 3169
Query 3170 GATCTTTCGTGATCTTTGCTTAACCATTCGCGCAGGAAAGACGGTTGCTTTGGTCGGCGA 3229
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 3170 GATCTTTCGTGATCTTTGCTTAACCATTCATGCAGGAAAGACGGTTGCTTTGGTAGGAGA 3229
Query 3230 AAGTGGGTCGGGGAAATCGACGGTGATCTCGCTGTTACAAAGATTTTACGATCCAGATTC 3289
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 3230 AAGCGGGTCGGGGAAATCAACGGTGATCTCGCTCTTACAAAGATTTTACGATCCAGATTC 3289
Query 3290 CGGTCAGATAACTTTAGACGGAGTTGAGCTCAAGAAGCTGCAATTGAAATGGTTGAGACA 3349
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3290 CGGTCATATAACTTTAGACGGAGTTGAGCTCAAGAAGCTGCAATTGAAATGGTTGAGACA 3349
Query 3350 ACAAATGGGACTAGTGGGACAAGAACCTGTCTTGTTCAACGACACGATTCGAGCCAACAT 3409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3350 ACAAATGGGACTAGTGGGACAAGAACCTGTCTTGTTCAACGACACGATTCGAGCCAATAT 3409
Query 3410 TGCTTATGGCAAAGGAAGTGAAGAGGCCGCAACCGAGTCTGAAATCATAGCCGCTGCAGA 3469
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3410 TGCTTATGGCAAAGGAAGCGAAGAGGCCGCAACCGAGTCTGAAATCATAGCCGCTGCAGA 3469
Query 3470 ACTTGCCAATGCACACAAATTCATCTCTAGCATACAACAGGGTTACGACACAGTGGTGGG 3529
||| |||||| |||||||||| ||||||||||||||| |||||||||| ||||| |||||
Sbjct 3470 ACTCGCCAATTCACACAAATTTATCTCTAGCATACAAGAGGGTTACGATACAGTCGTGGG 3529
Query 3530 AGAGAA-AGGGATTCAGTTATCAGGAGGACAGAAACAGCGGGTAGCTATAGCACGTGCCA 3588
||| || |||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 3530 AGA-AAGAGGGATTCAGTTGTCAGGAGGACAGAAACAGCGCGTAGCTATAGCACGCGCCA 3588
Query 3589 TCGTGAAAGAGCCGAAG-ATATTGCTTTTGGACGAAGCAACGAGTGCTCTTGATGCAGAA 3647
||||||||||||||| | || |||||||||||||||||||| || ||||||||||| |||
Sbjct 3589 TCGTGAAAGAGCCGA-GTATTTTGCTTTTGGACGAAGCAACAAGCGCTCTTGATGCGGAA 3647
Query 3648 TCAGAGCGACTGGTTCAGGATGCGCTTGACCGAGTGATTGTAAACCGAACCACGGTTGTG 3707
||||| ||| |||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 3648 TCAGAACGAGTGGTTCAGGATGCGCTTGACCGAGTGATGGTGAACCGAACCACGGTAGTG 3707
Query 3708 GTGGCTCACCGGTTATCGACCATTAAAAACGCTGACGTCATTGCCATCGTTAAGAACGGT 3767
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 3708 GTGGCTCATCGGTTATCGACCATTAAAAACGCTGACGTCATTGCCGTCGTTAAGAATGGT 3767
Query 3768 GTGATCGCTGAGAATGGGACTCACGAAACGTTGATCAAAATAGACGGTGGGGTTTATGCT 3827
|||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||
Sbjct 3768 GTGATCGCTGAGAAAGGGACTCACGGGACTTTGATCAAAATCGACGGTGGGGTTTATGCC 3827
Query 3828 TCCCTTGTTCAGCTTCACATGACTGCTTCTAATTGATA 3865
|| || |||||||| |||||||||||||||||||||||
Sbjct 3828 TCGCTAGTTCAGCTACACATGACTGCTTCTAATTGATA 3865
Score = 102 bits (55), Expect = 2e-20
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 3901 ATTTATGTTGTTGTATGCAAGTTTATGTAGCTGTCACTATTTATTTTCTTTCCCTTTCTC 3960
||| || |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct 3859 ATTGATATTGTTGTATGCAAGTTTATGTAGCTGTCACTAGTTATTTTGTTTCCTTTTCTC 3918
Query 3961 TCTAAATTTATAGTTATAA 3979
|| ||||| |||||||||
Sbjct 3919 TCCAAATTGGTAGTTATAA 3937
> Ahg490396 jgi|Araly1|490396|fgenesh2_kg.6__3530__AT4G01830.1
Length=3693
Score = 1334 bits (722), Expect = 0.0
Identities = 1450/1794 (81%), Gaps = 80/1794 (4%)
Strand=Plus/Plus
Query 117 AAGACAGTTCC-TCTCTACAAGCTATTTGCGTT-TGCAGATTCCT-TCGATGTGTTTTTG 173
||||| || || | ||||||| | ||| | || | |||||| || ||||||||| |||
Sbjct 31 AAGACTGTACCGT-TCTACAAATTGTTTTCCTTCT-CAGATT-CTACCGATGTGTTGTTG 87
Query 174 ATGATATG-TGGCTC-ACTTGGAGCTATTGGGAATGGAGTGTGTT-TACCTCTT-ATGAC 229
||||| || ||| || | | |||||||| | || || || |||| | || || |||||
Sbjct 88 ATGAT-TGTTGGTTCGA-TCGGAGCTATCGTAAACGGTGTTTGTTCT-CC-GTTAATGAC 143
Query 230 ATTGTTGTTTGGTGATCTCATCGATTCCTTTGGAAAAAATCAGAACAACAAAGACATTGT 289
||| ||||||||||||||||| ||| | || || |||| || |||||| |||| |||||
Sbjct 144 ATTATTGTTTGGTGATCTCATTGATGCATTGGGTCAAAACCAAAACAACGAAGAGATTGT 203
Query 290 TGATG-TTGTCTCAAAGGTTTGTCTT-AAATTCGTCTACCTTGGACTTGGAAG-ACTTGG 346
||| | | || || ||||||||| || ||||| ||||||||||||||| | || ||||||
Sbjct 204 TGA-GATAGTTTCCAAGGTTTGT-TTGAAATTTGTCTACCTTGGACTT-GTAGCACTTGG 260
Query 347 AGCAGCCTTTCTTCAGGTTG-CTTGTTGGATGATTACT-GGAGAGAGACAAGCCGCAAAG 404
||||||||||||||||| || ||||||||||||||||| ||| | |||||||| || |||
Sbjct 261 AGCAGCCTTTCTTCAGG-TGACTTGTTGGATGATTACTGGGA-AAAGACAAGCTGC-AAG 317
Query 405 -ATAAGAAGTAACTATCTGAAAACAATTCTGAGACAAGACATCGGATTCTTCGATGTTGA 463
||||| ||| ||||| ||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 318 AATAAGGAGTTTGTATCTAAAAACGATTCTAAGACAAGACATTGGATTCTTCGATGTCGA 377
Query 464 AACAAACACAGGAGAGGTTGTTGGTAGAATGTCTGGAGATACTGTTCATATTCAAGATGC 523
|| | ||| ||||| ||||||||| |||||||||| |||||||||| ||| | |||||
Sbjct 378 AATGAGCACCGGAGAAGTTGTTGGTCGAATGTCTGGTGATACTGTTCTTATACTTGATGC 437
Query 524 CATGGGTGAGAAGGTGGGGAAGTTTATTCAGCTGGTAT-CTACTTTCGTTGGCGGATTTG 582
|||||||||||||| ||||||||||| ||| || | | | || ||| |||| |||||||
Sbjct 438 TATGGGTGAGAAGGTTGGGAAGTTTATACAGTTGAT-TGCAACATTCTTTGGTGGATTTG 496
Query 583 CTTTAGCTTTTGCT-AAAGGATGGTTGCTAACA-TTGGTTATGTTAACTTCGATTCCTTT 640
|| |||| |||| | ||||||||||| || ||| || |||||||| || || |||||| |
Sbjct 497 CTATAGCGTTTG-TGAAAGGATGGTTACTTACACTT-GTTATGTTGACCTCAATTCCTCT 554
Query 641 TCTGGCTATGGCTGGTGCAGCCATGGCGCTTTTAGTGACTCGAGCTTCTTCTCGGGGACA 700
||| |||||| |||||||||| || ||| || |||| || |||||| ||||| | |||
Sbjct 555 TCTAGCTATGTCTGGTGCAGCTATAGCGATTATAGTTTCTAAAGCTTCGTCTCGAGAACA 614
Query 701 AGCCGCTTATGCAAAAGCAGCAACTGTTGTTGAACAGACAATCGGGTCTATCCGAACGGT 760
||| |||||||| |||||| |||||||||||||||| || | |||||||| ||||| ||
Sbjct 615 AGCTGCTTATGCGAAAGCATCAACTGTTGTTGAACAAACTTTGGGGTCTATTCGAACCGT 674
Query 761 TGCTTCTTTTACGGGAGAGAAGCAAGCAATAAACAGCTACA-AGAAGTACATAACA-TCG 818
||||||||| ||||||||||||||||| || | ||||||| |||| | |||| | | |
Sbjct 675 TGCTTCTTTCACGGGAGAGAAGCAAGCGATGAGTAGCTACAGAGAA-TTGATAA-ATTTG 732
Query 819 GCTTATAAATCAAGCAT-TCAA-CAAGG-TTTCTCCACTGGTTTAGGACTTGGAGTAATG 875
|| |||||||| | || | || ||||| ||| | || |||||||| ||||||||| ||
Sbjct 733 GCCTATAAATC--GAATGTTAAGCAAGGTTTTGT-TACGGGTTTAGGTCTTGGAGTACTG 789
Query 876 ATCTAT-GTGTTCTTCAGCAGC-TATGCTTTGGCTATTTGGTTTGGTGG-GAAGATGATA 932
||| | |||||||| | | | |||||||||| ||| ||||||||||| ||| ||||||
Sbjct 790 TTCT-TGGTGTTCTTTTGTA-CTTATGCTTTGGGTATATGGTTTGGTGGTGAA-ATGATA 846
Query 933 CTCGA-AAAAGGGTATACCGGTGGCT-CTGTGATCAACGTGATCATCATTGTGGTTGCGG 990
||| | |||||||||||| |||| | | |||||||| || || ||| ||| || ||
Sbjct 847 CTC-AGAAAAGGGTATACAAGTGG-TGCAGTGATCAATGTAATGGTCACTGTAGTCACGA 904
Query 991 GTTCAATGTCGCTT-GGGCAAACATCTCCATGTGTAACCGCATTTGCAGCAGGTCAAGCT 1049
|||| ||||| || |||||| || | || ||| | || |||||||| || |||||||||
Sbjct 905 GTTCGATGTC-TTTAGGGCAAGCAACGCCTTGTCTTACTGCATTTGCGGCTGGTCAAGCT 963
Query 1050 GCAGCATATAAGATGTTTGAGACGATCAAAAGAAAGCCTTTGATTGATGCTTATGACGTA 1109
||||| |||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||
Sbjct 964 GCAGCTTATAAGATGTTTGAGACGATCAAAAGAAAGCCTTCGATTGATACTTTTGACCTA 1023
Query 1110 AATGGAAAGGTTCTT-GGAGATATCCGAGGAG-ACATTGAACTGAAAGATGTGCATTTCA 1167
||||| |||||| || | |||||| ||||| | | |||||||||| ||||||| ||| |
Sbjct 1024 AATGGGAAGGTT-TTAGAAGATATTCGAGGCGTA-ATTGAACTGAGAGATGTGTGTTTTA 1081
Query 1168 GTTACCCCGCGAGGCC-AGACGAGGAGATATTTGATGGATTCTCTCTGTTTATCCCGAGC 1226
||||||| || ||||| | | || ||||| |||| |||||||||||| | || |||||
Sbjct 1082 GTTACCCTGCCAGGCCTA-AAGAAGAGATTTTTGGCGGATTCTCTCTGCTGATTCCGAGT 1140
Query 1227 GGTGCAACAGCAGCACTGGTAGGAGAAAGTGGAAGTGGAAAATCTACGGTGATAAATTTG 1286
|||||||| | || ||||||||||||| || ||||| |||||||| ||||| | ||||
Sbjct 1141 GGTGCAACCGTTGCTTTGGTAGGAGAAAGCGGGAGTGGGAAATCTACTGTGATCAGTTTG 1200
Query 1287 ATTGAGAGGTTTTATGATCCGAAAGCCGGTGAAGTACTCATTGATGGAATTAATCTT-AA 1345
||||| ||||||||||||||||| |||| |||| || |||||||| ||||| ||| ||
Sbjct 1201 ATTGAAAGGTTTTATGATCCGAATTCCGGCCAAGTGCTTATTGATGGTATTAA-CTTAAA 1259
Query 1346 GGAGTTTCAGTTGAAATGGATCAGAAGCAAA-ATCGGATTGGTCTGCCAAGAACCTGTTC 1404
||||||||||||||||||||| || | ||| || ||||||||| | |||||||||||||
Sbjct 1260 GGAGTTTCAGTTGAAATGGATTAG-GGGAAAGATTGGATTGGTCAGTCAAGAACCTGTTC 1318
Query 1405 TGTTTTCGTCGAGCATCATGGAGAATATC-GCCTACGGGAAAGAAAATGCAACGCTTCAA 1463
||||||| || || || |||||||||||| | ||||||||||| | ||||||| || ||
Sbjct 1319 TGTTTTCTTCTAGTATAATGGAGAATATCAG-GTACGGGAAAGAGAGTGCAACGGTTGAA 1377
Query 1464 GAGATT-AAAGTAGCAACAGAGCTAGCAAATGCAGCAAAGTTCATAAATAACTTACCTCA 1522
|||||| ||| |||| || |||||||||| || || |||||||| ||||| || ||||
Sbjct 1378 GAGATTCAAA-CAGCAGCAAAGCTAGCAAACGCGGCTAAGTTCATCAATAAGTTGCCTC- 1435
Query 1523 G-GGGTTAGATACAAAGGTAGGAGAGCACGGGACACAGCTCTCGGGAGGACAGAAACAGA 1581
| || ||||| || |||||| || || || || || ||||| ||||| ||||||||||
Sbjct 1436 GAGGTTTAGAGACTTTGGTAGGGGAACATGGAACTCAACTCTCAGGAGGGCAGAAACAGA 1495
Query 1582 GGATAGCTATTGCAAGAGCTATTCTTAAAGATCCGCGGGTTTTGCT-TCTGGATGAAGCA 1640
|||| ||||| || || || || ||||||||||||||| | ||||| | | ||||||||
Sbjct 1496 GGATTGCTATCGCGAGGGCGATCCTTAAAGATCCGCGGATCTTGCTGT-TAGATGAAGCT 1554
Query 1641 ACAAGCGCGCTCGATACAGAATCCGAAAGAGTGGTTCAAGAGGCTTTAGATAGAGTCATG 1700
|| ||||| || ||| | ||||||||||||||||||||||||||||||||||| || |||
Sbjct 1555 ACTAGCGCTCTTGATGCGGAATCCGAAAGAGTGGTTCAAGAGGCTTTAGATAGGGTAATG 1614
Query 1701 GTTAACCGGACTACGGTGGTGGTTGCGCATAGATTAAGCACGGTAAGAAATGCGGATATG 1760
|| ||||||||||| ||| | || |||||| | |||||||| || |||||||| |||| |
Sbjct 1615 GTGAACCGGACTACTGTGATTGTCGCGCATCGGTTAAGCACAGTGAGAAATGCTGATACG 1674
Query 1761 ATTGCAGTAATTCACAGCGGAAAAATGGTGGAAAAAGGTTCGCATTCTGAGTTG-TTGAA 1819
||||| || |||||| | ||||| || |||||| ||||||| ||||| ||||| || ||
Sbjct 1675 ATTGCTGTGATTCACCGTGGAAAGATAGTGGAAGAAGGTTCACATTCAGAGTTACTT-AA 1733
Query 1820 AGATTC-CGT-GGGAGCTTATTCGCAGCTCATTCGGTGT-CAAGAGATAAACAA 1870
|| || || ||| |||||||| ||||| || | || | ||||||||||||||
Sbjct 1734 -GAATCACGAAGGG-GCTTATTCACAGCTTATACAGT-TACAAGAGATAAACAA 1784
> Ahg473002 jgi|Araly1|473002|fgenesh2_kg.1__2956__AT1G28010.1
Length=3878
Score = 87.9 bits (47), Expect = 5e-16
Identities = 164/219 (75%), Gaps = 13/219 (6%)
Strand=Plus/Plus
Query 1525 GGTTA-GATACAAAGGTAGGAG-AGCACGGGACACAGCTCTCGGGAGGACAGAAACAGAG 1582
||||| |||| |||| |||| || | || || ||||||||||||||||||||||||||
Sbjct 1495 GGTTACAATACTCAGGTTGGAGAAGGA-GGAACTCAGCTCTCGGGAGGACAGAAACAGAG 1553
Query 1583 GATAGCTATTGCAAGAGCTATTCTTA-AAGATCCGCGGGTTTTGCTTCTGGATGAAGCAA 1641
||| || ||||| |||| |||| | || |||| | | || ||| | ||||||||||
Sbjct 1554 GATTGCAATTGCTCGAGCGGTTCTAAGAA-ATCCAAAGATATTACTTTTAGATGAAGCAA 1612
Query 1642 CAAGCGCGCTCGATACAGAATCCGA-AAGAGTGGTTCAAG-AGGCT-TTAGATAGA-GTC 1697
| ||||| || ||| | ||||| || |||| || |||| | | || || |||| | |||
Sbjct 1613 CGAGCGCTCTTGATGCCGAATCAGAGAAGATTG-TTCA-GCAAGCACTT-GATA-ATGTC 1668
Query 1698 ATGGTTAACCGGACTACGGTGGTGGTTGCGCATAGATTA 1736
|||| || | || || | || ||||| |||||||||
Sbjct 1669 ATGGAAAAAAGAACAACAATTGTCGTTGCACATAGATTA 1707
> Ahg934330 jgi|Araly1|934330|scaffold_402318.1
Length=4061
Score = 56.5 bits (30), Expect = 1e-06
Identities = 36/39 (92%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1557 CAGCTCTCGGGAGGACAGAAACAGAGGATAGCTATTGCA 1595
||||||||||||||||||||||||||||| || || |||
Sbjct 3501 CAGCTCTCGGGAGGACAGAAACAGAGGATCGCAATCGCA 3539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151126622383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5