BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02550.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918906 jgi|Araly1|918906|scaffold_100187.1 1142 0.0
> Ahg918906 jgi|Araly1|918906|scaffold_100187.1
Length=769
Score = 1142 bits (618), Expect = 0.0
Identities = 692/729 (95%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAGTCATCACCATTGctctgtttctctcttgctttgttttctctcctctcatct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 21 ATGAAGAAGTCATCACCATTGCTCTGTTTCTCTCTTGCTCTGTTTTCTCTCCTATCATCT 80
Query 61 ccttcctcttccactcgtataatctcctccATTGTCCCCTCCGCCGCTCCTTCTCCCGCC 120
|||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 81 CCTTCCTCTTCCGCTCGTATCTTCTCCTCCGTTGTCCCCTCCGCCGCTCCTTCTCCCGCC 140
Query 121 GTAGCCCCCACCACCGACGGCGACGTAGACGAAAACGATTTCTCCGCCTTCACGCAATGG 180
||| || ||||| ||||||| | |||||| |||| |||||||||||||||||||||||||
Sbjct 141 GTATCCACCACCTCCGACGGGGGCGTAGATGAAACCGATTTCTCCGCCTTCACGCAATGG 200
Query 181 AACATTTTAAACCTAACGGACCTTAAAAGTACCTTTAAAAACCTCCCGGATTTCTCTAAG 240
||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 201 AACATTTTAAACCTAACTGACCTCAAAAGCACCTTTAAAAACCTCCCGGATCTCTCTAAG 260
Query 241 CTCAACATCTCATCCCTTCACGTGTCACCCGCCGTTGGCTCCGTCTGCTCTAACACCGAC 300
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 261 CTCAACATCTCATCCCTCCACGTGTCACCCGCCGTTGGCTACGTCTGCTCTAACACCGAC 320
Query 301 TACGCCGCCGAATGCATCGTCTCAATCCTCCCACTCCTCCGTGACTTCCGCAAATTCGAG 360
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 321 TACGCTGCCGAATGCATCGTCTCAATCCTCCCACTCCTCCGCGACTTCCGCAAATTCGAG 380
Query 361 CCAAAACCCATCGACGTCCTTCGAATGGAGATGAGTGCGCTCTACGAGAAAGCTAACGCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CCAAAACCCATCGACGTCCTTCGAATGGAGATGAGTGCGCTCTACGAGAAAGCTAACGCC 440
Query 421 ACGCTTGACTTAGCCAAGCGTCTCATCGTGGATAAGTCAACGCCGCGTGACGTGGCTGAT 480
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 441 ACGCTCGACTTAGCCAAGCGTCTCATCGTTGACCAGTCAACGCCGCGTGACGTGGCTGAT 500
Query 481 GTATTGGACTTGTGTGTCGATAACTACGAGTCGCTTCTCGATGATCTTAAAGATGCTTCC 540
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 501 GTTTTGGACTTATGTGTCGATAACTACGAGTCGCTTCTCGATGATCTCAAAGATGCTTCC 560
Query 541 GTAGCCGTCGATGATGGAGACTTTGAACGGCTCGAGAGTGTGGTCAGTGCTGCGATCGCT 600
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 561 GTAGCCGTCGATGATGGAGACTTTGGACGGCTCGAGAGTGTGGTGAGTGCTGCGATCGCT 620
Query 601 GATGTGGTGACTTGCTCTGACGCGTTCGCTGAGTCGTCGGAGCTTGAGTCGCCGATGGCT 660
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 621 GATGTGGTGACTTGCTCGGACGCGTTCACTGAGTCGTCGGAGCTTGAGTCGCCGATGGTT 680
Query 661 AACGTTGATGATTTTCTTAAGAAACTTTGTAGCAATGTCTTGGCTATTTCTCAGATGATC 720
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 681 AACGTTGATGCTTTTCTTAAGAAGCTTTGTAGTAATGTCTTGGCTATTTCTCAGATGATC 740
Query 721 CACATGTAA 729
|| ||||||
Sbjct 741 CATATGTAA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5