BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02560.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918907 jgi|Araly1|918907|scaffold_100188.1 1607 0.0
> Ahg918907 jgi|Araly1|918907|scaffold_100188.1
Length=937
Score = 1607 bits (870), Expect = 0.0
Identities = 916/938 (98%), Gaps = 4/938 (0%)
Strand=Plus/Plus
Query 123 CAAATTGA-TAACAAGAA-AATGGCTCATGCTTGCGTCTCTACATCGGCTTCTTCTCTCA 180
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAATTGACCAACAAGAATAATGGCTCATGCTTGCGTCTCTACATCGGCTTCTTCTCTCA 60
Query 181 GATTCACAGCTGGATTCGTCTCCGCTAGTCCCAATGGCTCCTCTTTCGATTCTCCCAAGC 240
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 61 GATTCACAGCTGGATTCGTCTCCGCTAGTCCTAATGGTTCCTCTTTCGATTCTCCCAAGC 120
Query 241 TTTCTCTTCCTTTCGAGCCTCTCCGTTCAAGGAAGACGAATAAGTTAGTTAGCGATAGAA 300
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 121 TTTCTCTTCCTTTCGAGCCTCTTCGTTCAAGGAAGACGAAGAAGTTAGTTAGCGATAGAA 180
Query 301 AGAATTGGAAGAATTCAACTCCGAAAGCTGTATATTCCGGCAATCTCTGGACACCGGAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAATTGGAAGAATTCAACTCCGAAAGCTGTATATTCCGGCAATCTCTGGACACCGGAGA 240
Query 361 TTCCGTCTCCTCAAGGAGTTTGGTCCATTAGAGATGATTTACAAGTCCCTTCTTCGCCGT 420
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTCTTCTCCTCAAGGAGTTTGGTCCATTAGAGATGATTTACAAGTCCCTTCTTCGCCGT 300
Query 421 ATTTTCCTGCT-TATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAG 479
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTTTCCTG-TGTATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAG 359
Query 480 AGTATCATTAGTCAGCTCTTCCAATATAGGATTATTCGCTGTGGTGGTGCTGTGGATGAC 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTATCATTAGTCAGCTCTTCCAATATAGGATTATTCGCTGTGGTGGTGCTGTGGATGAT 419
Query 540 GATATGGCAAACATAATTGTAGCTCAACTCCTGTATCTTGATGCTGTTGATCCTACTAAG 599
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 GATATGGCAAATATAATTGTAGCTCAACTTCTGTATCTTGATGCTGTTGATCCTACTAAG 479
Query 600 GATATTGTCATGTATGTTAATTCTCCTGGTGGATCAGTTACAGCTGGCATGGCTATATTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATATTGTCATGTATGTTAATTCTCCTGGTGGATCAGTTACAGCTGGCATGGCTATATTC 539
Query 660 GATACTATGAGGCACATCCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGT 719
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GATACTATGAGGCATATCCGGCCTGATGTGTCCACTGTTTGTGTCGGTCTAGCTGCTAGT 599
Query 720 ATGGGAGCTTTTCTGCTTAGTGCTGGAACCAAAGGAAAAAGATACAGTCTACCAAACTCA 779
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 600 ATGGGAGCTTTTCTGCTTAGTGCTGGAACCAAAGGGAAAAGATACAGTCTACCGAACTCA 659
Query 780 AGGATAATGATCCATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGATAATGATCCATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATT 719
Query 840 CAGGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATACCACACT 899
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 CAGGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCGTACCACACT 779
Query 900 GGTCAAAGCCTGGAGAAGATAAACCAGGACACAGACCGTGATTTCTTCATGAGTGCCAAA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 GGTCAAAGCCTGGAGAAGATAAACCAGGACACAGACCGTGATTTCTTCATGAGTGCTAAA 839
Query 960 GAAGCAAAAGAGTATGGACTTATCGACGGTGTTATCATGAACCCTCTTAAAGCTCTCCAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGCAAAAGAGTATGGACTTATCGACGGTGTTATCATGAACCCTCTTAAAGCTCTCCAG 899
Query 1020 CCACTTGCAGCAGCTTAATCGCCTAAAGGTAGTGGTTC 1057
|||||||||||||||||| ||||| |||||||||||||
Sbjct 900 CCACTTGCAGCAGCTTAAACGCCTGAAGGTAGTGGTTC 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5