BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02575.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311362 jgi|Araly1|311362|fgenesh1_pm.C_scaffold_1000142 970 0.0
> Ahg311362 jgi|Araly1|311362|fgenesh1_pm.C_scaffold_1000142
Length=1281
Score = 970 bits (525), Expect = 0.0
Identities = 598/633 (94%), Gaps = 5/633 (1%)
Strand=Plus/Plus
Query 229 GGCAGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACTTTAATCCA 288
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GGCCGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACTTTAATCCA 710
Query 289 CAGTCTCTCAGGAAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACATCTGCTGGAT 348
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CAGTCTCTTAGGTAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACATCTGCTGGAT 770
Query 349 CGTTCTCTTCATCGCCCAAGCTTGTGCCTTTGGGATCAAAAGAACCATGAGCACGACCAT 408
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 771 CGTTCTCTTCATCGCCCAAGCTTGTGCCTTCGGAATCAAAAGAACCATGAGCACGACCAT 830
Query 409 GTCTATAAATCCAGACAAAAACTTGTTTCTTGCGACACATGAAAGATG-GATGTTGGTTA 467
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 831 GTCTATAAATCCAGACAAAAACTTGTTTCTTGCGACACATGAAAGATGTG-TGCTGGTTA 889
Query 468 GGGTTTTGTTCTTTTTGGGGCTACACGAAGTGATGCTGATGTGGTTTAGAGTCGTGGTTA 527
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGGTTTTGTTCGTTTTGGGGCTACACGAAGTGATGCTGATGTGGTTTAGAGTCGTGGTTA 949
Query 528 AGCCTGTGGTTGACAACACTATATATGGGGTCTACGTGGAGGAGAGGTGGTCCGAGAGAG 587
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 950 AGCCTGTGGTTGACAAAACTATATATGGGGTTTACGTGGAGGAGAGGTGGTCCGAGAGAG 1009
Query 588 CCGTTGTGGCAGTGACCTTTGGTATAATGTGGTGGTGGAGGCTAAGAGATGAGGTAGAAA 647
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1010 CCGTTGTGGCACTGACCTTTGGTCTAATGTGGTGGTGGAGGCTAAGAGATGAGGTAGAAA 1069
Query 648 GTCTTGTGGTGGTGGTTACGGCGGATAGACTTAACCTCCCCATTCGTTTGGAGGGTCTCA 707
||||||||||||||||||| | ||||| || | |||||||||||||||||| ||||||||
Sbjct 1070 GTCTTGTGGTGGTGGTTACAGAGGATAAACGTGACCTCCCCATTCGTTTGGTGGGTCTCA 1129
Query 708 ATTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAATTGGTTTAATGAAGATCTTCA 767
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1130 GTTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAATTGGTTTGGTGAAGATCTTCA 1189
Query 768 AAGGGTTTTTGGATTTTGTGAATACGTTGA-CTTTGAGCATTAAGAGGTCGAGAAAAGGC 826
||||||||||| |||||||||| | ||| | ||| || ||||| ||| ||||||||||||
Sbjct 1190 AAGGGTTTTTGTATTTTGTGAACATGTTAATCTT-GACCATTAGGAGATCGAGAAAAGGC 1248
Query 827 TGTGAATCATGTGTTTTTGATGAT-ATGTGTAA 858
|| ||||| |||||| |||||||| ||||||||
Sbjct 1249 TGCGAATCGTGTGTTGTTGATGATCATGTGTAA 1281
Score = 462 bits (250), Expect = 2e-129
Identities = 365/419 (87%), Gaps = 13/419 (3%)
Strand=Plus/Plus
Query 44 ATGGAACATGAAGAAACACAAAAGAACACAAGAAACAGCTGGTC-CCTGATTCGACCATT 102
|||||||||||||||||||| ||||||||||||| ||||||||| || | ||||||||||
Sbjct 1 ATGGAACATGAAGAAACACAGAAGAACACAAGAAGCAGCTGGTCACC-GCTTCGACCATT 59
Query 103 TCAAATGAtctccattagctttcttagcctcctcctccctctatctttcctctttctttc 162
||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||| |||||
Sbjct 60 TCAAATGATCTCCATTAGCCTTCTTAGTCTCCTTGTCCCTCTCTCTTTCCTCTTCCTTTC 119
Query 163 acgtctctctctct-atacctcctcaactccGGTCACCGTCTCCGGCGT-TTCCTCTGTT 220
|||||||||| | | | |||||||| |||| |||||| | |||||||| || || ||
Sbjct 120 ACGTCTCTCTGTTTCCT-CCTCCTCAGCTCCAGTCACCATTTCCGGCGTATT-GTCCCTT 177
Query 221 ATTCACCAGGCAGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACT 280
|||||||||| ||||||||||| |||||||| ||||||| ||| ||||| |||| ||||
Sbjct 178 CTTCACCAGGCCGATGTCGGAGTTTTATACACAATCTTGTCTCTTATCATAGTCTCCACT 237
Query 281 TTAATCCACAGTCTC-TCAGGAAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACAT 339
|||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 TTAATCCACAATCTCTTC-GGAAAACCAGAATGCTCTGTTCTCCATTCCTATCTCTACAT 296
Query 340 CTGCTGGATCGTTCTCTTCATCGCCCAAGCTTGTG-C-C-TTTGGGATCAAAAGAACCAT 396
||||||||| ||||||||||||| ||||||||||| | | ||||| ||| || |||||||
Sbjct 297 CTGCTGGATTGTTCTCTTCATCGTCCAAGCTTGTGTCGCCTTTGGAATCGAAGGAACCAT 356
Query 397 GAGCACGACCATGTCTATAAATC-CAGACAAAAACTTGTTTCTTGCGACACATGAAAGA 454
|||||||||| | |||||||| | ||||||||| ||||| ||||||| | || ||||||
Sbjct 357 GAGCACGACCGTTTCTATAAA-CACAGACAAAAGCTTGTCTCTTGCGGCTCAAGAAAGA 414
Score = 226 bits (122), Expect = 2e-58
Identities = 200/237 (84%), Gaps = 8/237 (3%)
Strand=Plus/Plus
Query 515 AGAGTCGTGGTTAAGCCTGTGGTTGACAACACTATATAT-GGGGTCTACGTGGAGG-AGA 572
||||| ||||||||||| ||||| ||| ||||| | | | ||||| ||| |||||| |||
Sbjct 412 AGAGTAGTGGTTAAGCCGGTGGTCGACGACACTGT-TTTCGGGGTTTACATGGAGGAAGA 470
Query 573 G-G-TGGTCCGAGAGAGCCGTTGTGGCAGTGACCTTTGGTATAATGTGGTGGTGGAGGCT 630
| | ||||| |||||| |||| ||||| ||||| |||||| |||||||||||||||||||
Sbjct 471 GAGATGGTCGGAGAGAACCGTCGTGGCGGTGACTTTTGGTCTAATGTGGTGGTGGAGGCT 530
Query 631 AAGAGATGAGGTAGAAAGTCTTGTGGTGGTGGTTACGGCGGATAGACTTAACCTCCCCAT 690
||||||||||||||||||||| | | |||||||| | | || || || || ||| | ||
Sbjct 531 AAGAGATGAGGTAGAAAGTCT-G-G-TGGTGGTTGCAGAGGTTAAACGTAGCCTTCTGAT 587
Query 691 TCGTTTGGAGGGTCTCAATTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAAT 747
| ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 588 ACATTTGGAGGGTCTCGATTTTGTAAACTGGTGGATGTATTACATCTGTGTTGGAAT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5