BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02580.1 Length=2291 Score E Sequences producing significant alignments: (Bits) Value Ahg470218 jgi|Araly1|470218|fgenesh2_kg.1__172__AT1G02580.1 2793 0.0 Ahg919137 jgi|Araly1|919137|scaffold_100418.1 414 1e-114 > Ahg470218 jgi|Araly1|470218|fgenesh2_kg.1__172__AT1G02580.1 Length=2229 Score = 2793 bits (1512), Expect = 0.0 Identities = 1793/1930 (93%), Gaps = 13/1930 (1%) Strand=Plus/Plus Query 353 TTTCTTGATGAAGATGTACCATTATTACCAAGTGTCAAGCTTCCAATTGTTGAGAAGCTA 412 ||| || || |||| | ||||||||| ||||||||||| |||||| |||||||| ||||| Sbjct 306 TTT-TTAATAAAGAGGCACCATTATTTCCAAGTGTCAACCTTCCAGTTGTTGAGCAGCTA 364 Query 413 CCACGATCCATTACATGGGTCTTCACCAAAAGTAGCCAGCTGATGGCTGAAAGTGATTCT 472 ||||||||| ||||||||||||||| |||||| | || ||||||||||||||||||||| Sbjct 365 CCACGATCCCTTACATGGGTCTTCATCAAAAG--G-CATCTGATGGCTGAAAGTGATTCT 421 Query 473 GTGATTGGTAAGAGACAAATCTATTATTTGAATGGTGAGGCACTAGAATTGAGCAGtgaa 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 422 GTGATTGGTAAGAGACAAATCTATTATTTGAATGGTGAGGCACTAGAATTGAGCAGCGAA 481 Query 533 gaagatgaggaagatgaagaagaagatgaggaagaaatcaagaaagaaaaatgcgaattt 592 ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 482 GAAGAAGAAGAAGATGAAGAAGAAGATGAGGAAGAAGCCAAGAAAGAAAAATGCGAATTT 541 Query 593 tctgaagatgTAGACCGATTTATATGGACGGTTGGGCAGGACTATGGTTTGGATGATCTG 652 || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 542 TCCAAAGATGTAGACCGGTTTATATGGACGGTTGGGCAGGATTATGGTTTGGATGATCTG 601 Query 653 GTCGTGCGGCGTGCTCTCGCCAAGTACCTCGAAGTGGATGTTTCGGACATATTGGAAAGA 712 ||||||| ||| ||||||||||||| |||||||||||| ||||| || |||||||||||| Sbjct 602 GTCGTGCAGCGAGCTCTCGCCAAGTTCCTCGAAGTGGAAGTTTCCGATATATTGGAAAGA 661 Query 713 TACAATGAACTCAAGCTTAAGAATGATGGAACTGCTGGTGAGGCTTCTGATTTGACATCC 772 |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 662 TACAATGAGCTCAAGCTTAAGAATGATGAAACTGTTGGTGAGGCTTCTGATTTGACATCC 721 Query 773 AAGACAATAACTACTGCTTTCCAGGATTTTGCTGATAGACGTCATTGCCGTCGTTGCATG 832 |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || Sbjct 722 AAGACAATAACTACTGCTTTTCAGGATTTTGCTGATAGACGTCATTGCCGCCGTTGCTTG 781 Query 833 ATATTCGATTGTCATATGCATGAGAAGTATGAGCCCGAGTCTAGATCCAGCGAAGACAAA 892 ||||| |||||||||||||||||||||| ||||||||||| |||| |||||||||||||| Sbjct 782 ATATTTGATTGTCATATGCATGAGAAGTTTGAGCCCGAGTTTAGACCCAGCGAAGACAAA 841 Query 893 TCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCAGTGAGCATTGTTACCTCAAGGTG 952 ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 842 TCTGGTTTGTTTGAGAATGAAGATAGAGAACCATGCAGTGAGCATTGTTACCTCAAGGTG 901 Query 953 AGGAGTGTGACAGAAGCTGATCATGTGATGGATAATGATAACTCTATATCAAACAAGATT 1012 ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| | Sbjct 902 AGGAGTGTGACAGAAGCTGATCATGCGGTAGATAATGATAACTCTATATCAAACAAGAAT 961 Query 1013 GTGGTCTCAGATCCAAACAAC-ACTATGTGGACGCCTGTAGAGAAGGATCTTTACTTGAA 1071 |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 962 GTGGTCTCAGATCCAAAC-ACAACTATGTGGACGCCTGTGGAGAAGGATCTTTACTTGAA 1020 Query 1072 AGGAATTGAGATATTTGGGAGAAACAGTTGTGATGTTGCATTAAACATACTTCGGGGGCT 1131 |||| || | || ||||||||||||||||||| | || |||||||||||| ||||||||| Sbjct 1021 AGGAGTTCAAATCTTTGGGAGAAACAGTTGTGCTATTACATTAAACATACATCGGGGGCT 1080 Query 1132 TAAGACGTGCCTAGAGATTTACAATTACATGCGCGAACAAGATCAATGTACTATGTCATT 1191 ||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 1081 TAAGACGTGTCTAGAGGTTTACAATTACATGCTTGAACAAGATCAATGTACTATGTCATT 1140 Query 1192 AGACCTTAACAAAACTACACAAAGACACAATCAGGTTACCAAAAAAGTATCTCGAAAAAG 1251 || |||| ||||||||||| ||| | | |||||||||| ||||||||||||||||||| | Sbjct 1141 AGTCCTTCACAAAACTACAAAAACAAAGAATCAGGTTAACAAAAAAGTATCTCGAAAAGG 1200 Query 1252 TAGTAGGTCGGTCCGCAAAAAATCGAGACTCCGAAAATATGCTCGTTATCCGCCTGCTTT 1311 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1201 TACTAGGTCGGTCCGCAAAAAATCCAGACTCCGAAAATATGCTCGTTATCCGCCTGCTTT 1260 Query 1312 AAAGAAAACAACTAGTGGAGAAGCTAAGTTTTATAAGCACTACACACCATGCACTTGCAA 1371 ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1261 GAAGAAAACAACTAATGGAGAAGCTAAGTTTTATAAGCACTACTCACCATGCACTTGCAA 1320 Query 1372 GTCAAAATGTGGACAGCAATGCCCTTGTTTAACTCACGAAAATTGCTGCGAGAAATATTG 1431 ||||||||||||| | |||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 1321 GTCAAAATGTGGATATCAATGCCCTTGTTTAACTAATGAAAATTGCTGTGAGAAATATTG 1380 Query 1432 CGGGTGCTCAAAGGATTGCAACAATCGCTTTGGAGGATGTAATTGTGCAATTGGCCAATG 1491 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CGGGTGCCCGAAGGATTGCAACAATCGCTTTGGAGGATGTAATTGTGCAATTGGCCAATG 1440 Query 1492 CACAAATC-GACAATGTCCTTGTTTTGCTGCTAATCGTGAATGCGATCCAGATCTTTGTC 1550 |||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| |||| Sbjct 1441 CACAAA-CAGACAATGTCCTTGCTTTGCTGCTAATCGTGAATGTGATCCAGATCTATGTC 1499 Query 1551 GGAGTTGTCCTCTTAGCTGTGGAGATGGCACTCTTGGTGAGACACCAGTGCAAATCCAAT 1610 ||||||||||||||||||||||||||||| ||||||||||| || ||| |||||| |||| Sbjct 1500 GGAGTTGTCCTCTTAGCTGTGGAGATGGCTCTCTTGGTGAGCCATCAGAGCAAATACAAT 1559 Query 1611 GCAAGAACATGCAATTCCTCCTTCAAACCAATAAAAAGATTCTCATTGGAAAGTCTGATG 1670 ||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||| ||| Sbjct 1560 GCAAGAACATGCATTTCCTCCTTAAAAAAAATAAGAAGATTCTCATTGGAAAGTCTAATG 1619 Query 1671 TTCATGGATGGGGTGCATTTACATGGGACTCTCTTAAAAAGAATGAGTATCTCGGAGAAT 1730 ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| Sbjct 1620 TTCATGGATGGGGTGCATTTACACCGGACTCTCTTAAAAAGAATGAGTTTCTAGGAGAAT 1679 Query 1731 ATACTGGAGAACTGATCACTCATGATGAAGCTAATGAGCGTGGGAGAATAGAAGATCGGA 1790 ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| Sbjct 1680 ATACTGGAGAACTGATCACTCATGAGGAAGCAAATGAGCGTGGGAGAGTAGAAGATCGGA 1739 Query 1791 TTGGTTCTTCCTACCTCTTTACCTTGAATGATCAGCTCGAAATCGATGCTCGCCGTAAAG 1850 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1740 TTGGTTCTTCATACCTCTTTACCTTGAATGATCAGCTCGAAATCGATGCTCGCCGTTATG 1799 Query 1851 GAAACGAGTTCAAATTTCTCAATCACTCAGCAAGACCTAACTGCTACGCCAAGTTGATGA 1910 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1800 GAAACAAGTTCAAATTTCTCAATCACTCAGCAAGACCTAACTGCTACGCCAAGTTGATGA 1859 Query 1911 TTGTGAGAGGAGATCAGAGGATTGGTCTATTTGCGGAGAGAGCAATCGAAGAAGGTGAGG 1970 |||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| Sbjct 1860 TTGTGAGAGGAGATCAGAGGATTGGTCTATTTGCAGAGAGAGCAATCGAACAAAATGAGG 1919 Query 1971 AGCTTTTCTTCGACTACTGCTATGGACCAGAACATGCGGATTGGTCGCGTGGTCGAGAAC 2030 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1920 AGCTTTTCTTCGACTACTGCTATGGACCAGAGCATGCGGATTGGTCTCGTGGTCGAGAAC 1979 Query 2031 CTAGAAAGACTGGTGCTTCTAAAAGGTCTAAGGAAGCCCGTCCAGCTCGTTAGTTTTTGA 2090 |||||||||||||||||||||||||||||||||||||||||||| || | ||| ||| || Sbjct 1980 CTAGAAAGACTGGTGCTTCTAAAAGGTCTAAGGAAGCCCGTCCATCTAGATAGATTTGGA 2039 Query 2091 TCTGAGGAGAAGCAGCAATTCAAGCAGTCCtttttttATGTTATGGTA-TATCAATTAAT 2149 ||||||||||||||||||| ||||||||| |||||| | ||||||||| ||||||| ||| Sbjct 2040 TCTGAGGAGAAGCAGCAATACAAGCAGTCGTTTTTTAAAGTTATGGTAATATCAATAAAT 2099 Query 2150 AATGTAATGCTATTTTGTGTTACTAAACCAAAACTTAAGTTTCTGttttatttgttttag 2209 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 2100 AATGTAATGCTATTTTGTGTTACTAAACCAAAACTTAAGTTTCTGTTTAATTTGTTTCAG 2159 Query 2210 ggtgttttgttt-gtat--catatgtgtcttaa-ctttcaaagttttctttttGTATTTC 2265 ||| |||||||| || | |||||||||||||| || |||||||||| |||||||||||| Sbjct 2160 GGTTTTTTGTTTTGTTTGTCATATGTGTCTTAAGCTCTCAAAGTTTTATTTTTGTATTTC 2219 Query 2266 AATTTAAAAA 2275 |||| ||||| Sbjct 2220 AATTAAAAAA 2229 Score = 440 bits (238), Expect = 2e-122 Identities = 288/311 (93%), Gaps = 8/311 (3%) Strand=Plus/Plus Query 1 AGGCGAGTGGTTAATGGAGAAGGAAAACCATGAGGACGATGGTGAGGGTTTGCCACCCGA 60 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1 AGGCGAGTGGTTAATGGAGAAGGACAACCATGAGGACGATGGTGAGGATTTGCCACCCGA 60 Query 61 -ACTAAATCAGATAAAAGAGCAAATCGAAAAGGAGAGATTTCTGCATATCAAGAGAAA-A 118 | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | Sbjct 61 TA-TAAATCAGATAAAAGAGCAAATCGAAGAGGAGAGATTTCTGCATATCAAGA-AAACA 118 Query 119 TTCGAGCTGAGATACATTCCAAGTGTGGCTACTCATGCTTCACACCATCAATCGTTTGAC 178 ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 119 TTCGAGCTGAGATGCATTCCAAGTGTAGCTGCTCATGCTTCACACCATCAATCGTTTGAC 178 Query 179 TTAAACCAGCCCGCT-GCAGAGGATGATAATGGAGGAGACAACAAATCACTT-TTGTCGA 236 |||||||||||| || |||||||||||||||| ||||||||||||| ||||| || || | Sbjct 179 TTAAACCAGCCC-CTTGCAGAGGATGATAATGAAGGAGACAACAAAACACTTCTT-TCTA 236 Query 237 GAATGCAAAACCCACTTCGTCATTTCAGTGCCTCATCTGATTATAATTCTTACGAAGATC 296 |||||||||||||||||| |||||||||||||| |||||||| | || |||||||||||| Sbjct 237 GAATGCAAAACCCACTTCATCATTTCAGTGCCTTATCTGATTCTGATACTTACGAAGATC 296 Query 297 AAGGTTATGTT 307 |||||| |||| Sbjct 297 AAGGTTGTGTT 307 > Ahg919137 jgi|Araly1|919137|scaffold_100418.1 Length=619 Score = 414 bits (224), Expect = 1e-114 Identities = 283/312 (91%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 1126 GGGGCTTAAGACGTGCCTAGAGATTTACAATTACATGCGCGAACAAGATCAATGTACTAT 1185 |||| ||||||||||||||||| |||||||||||||| | ||||| |||||| ||||| | Sbjct 278 GGGGATTAAGACGTGCCTAGAGGTTTACAATTACATGTGTGAACATGATCAACGTACTGT 337 Query 1186 GTCATTAGACCTTAACAAAACTACACAAAGACACAATCAGGTTACCAAAAAAGTATCTCG 1245 ||||||||||||||||||| ||| | ||| |||||| ||||||| ||||||||||||||| Sbjct 338 GTCATTAGACCTTAACAAACCTAGAGAAAAACACAAGCAGGTTAACAAAAAAGTATCTCG 397 Query 1246 AAAAAGTAGTAGGTCGGTCCGCAAAAAATCGAGACTCCGAAAATATGCTCGTTATCCGCC 1305 ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||| Sbjct 398 AAAAAGTAGTAGGTCAGTCCGCAAAAAATCCAGACTTGGAAAATATGCTCGTTGTCCGCC 457 Query 1306 TGCTTTAAAGAAAACAACTAGTGGAGAAGCTAAGTTTTATAAGCACTACACACCATGCAC 1365 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 458 TGCTTTAAAGAAAACAACTAATGGAGAAGCTCAGTTTTATAAGCACTACACACCATGCAC 517 Query 1366 TTGCA-AGTCAAAATGTGGACAGCAATGCCCTTGTTTAACTCACGAAAATTGCTGCGAGA 1424 |||| | |||||||||||| | |||| ||||||||||||| | |||||||| ||||||| Sbjct 518 TTGCGCA-TCAAAATGTGGAGATCAATCCCCTTGTTTAACTAATGAAAATTGTTGCGAGA 576 Query 1425 AATATTGCGGGT 1436 |||||||||||| Sbjct 577 AATATTGCGGGT 588 Score = 316 bits (171), Expect = 3e-85 Identities = 228/254 (90%), Gaps = 9/254 (4%) Strand=Plus/Plus Query 706 GGAAAGATACAATGAACTCAAGCTTAAGAATGATGGAACTGCTGGTGAGGCTTCTGATTT 765 |||||||| |||||| || |||||||||||||||||||| | |||||||||||||||||| Sbjct 26 GGAAAGATTCAATGAGCTTAAGCTTAAGAATGATGGAACAGTTGGTGAGGCTTCTGATTT 85 Query 766 GACATCCAAGACAATAACTACTGCTTTCCAGGATTTTGCTGATAGACGTCATTGCCGTCG 825 |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 86 CACATCCAAGATAATAACTACTGCTTTTCAGAATTTTGCTGATAGACGTCATTGCCGTCG 145 Query 826 TTGCATGATATTCGATTGTCATATGCATGAGAAGTATGAGCC--CGAGT-CTA-GA-TC- 879 |||| ||||||| ||||||||||||||||||||||||||||| | | | || | | Sbjct 146 TTGCTTGATATTTGATTGTCATATGCATGAGAAGTATGAGCCAACCATTGCTTTGGCTTT 205 Query 880 -CAG--CGAAGACAAATCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCAGTGAGCA 936 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 206 TCAGAGCGAAGACAAATCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCACTGAGCA 265 Query 937 TTGTTACCTCAAGG 950 |||||||||||||| Sbjct 266 TTGTTACCTCAAGG 279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86274404925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5