BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02580.1
Length=2291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470218 jgi|Araly1|470218|fgenesh2_kg.1__172__AT1G02580.1 2793 0.0
Ahg919137 jgi|Araly1|919137|scaffold_100418.1 414 1e-114
> Ahg470218 jgi|Araly1|470218|fgenesh2_kg.1__172__AT1G02580.1
Length=2229
Score = 2793 bits (1512), Expect = 0.0
Identities = 1793/1930 (93%), Gaps = 13/1930 (1%)
Strand=Plus/Plus
Query 353 TTTCTTGATGAAGATGTACCATTATTACCAAGTGTCAAGCTTCCAATTGTTGAGAAGCTA 412
||| || || |||| | ||||||||| ||||||||||| |||||| |||||||| |||||
Sbjct 306 TTT-TTAATAAAGAGGCACCATTATTTCCAAGTGTCAACCTTCCAGTTGTTGAGCAGCTA 364
Query 413 CCACGATCCATTACATGGGTCTTCACCAAAAGTAGCCAGCTGATGGCTGAAAGTGATTCT 472
||||||||| ||||||||||||||| |||||| | || |||||||||||||||||||||
Sbjct 365 CCACGATCCCTTACATGGGTCTTCATCAAAAG--G-CATCTGATGGCTGAAAGTGATTCT 421
Query 473 GTGATTGGTAAGAGACAAATCTATTATTTGAATGGTGAGGCACTAGAATTGAGCAGtgaa 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 422 GTGATTGGTAAGAGACAAATCTATTATTTGAATGGTGAGGCACTAGAATTGAGCAGCGAA 481
Query 533 gaagatgaggaagatgaagaagaagatgaggaagaaatcaagaaagaaaaatgcgaattt 592
||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 482 GAAGAAGAAGAAGATGAAGAAGAAGATGAGGAAGAAGCCAAGAAAGAAAAATGCGAATTT 541
Query 593 tctgaagatgTAGACCGATTTATATGGACGGTTGGGCAGGACTATGGTTTGGATGATCTG 652
|| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 542 TCCAAAGATGTAGACCGGTTTATATGGACGGTTGGGCAGGATTATGGTTTGGATGATCTG 601
Query 653 GTCGTGCGGCGTGCTCTCGCCAAGTACCTCGAAGTGGATGTTTCGGACATATTGGAAAGA 712
||||||| ||| ||||||||||||| |||||||||||| ||||| || ||||||||||||
Sbjct 602 GTCGTGCAGCGAGCTCTCGCCAAGTTCCTCGAAGTGGAAGTTTCCGATATATTGGAAAGA 661
Query 713 TACAATGAACTCAAGCTTAAGAATGATGGAACTGCTGGTGAGGCTTCTGATTTGACATCC 772
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 662 TACAATGAGCTCAAGCTTAAGAATGATGAAACTGTTGGTGAGGCTTCTGATTTGACATCC 721
Query 773 AAGACAATAACTACTGCTTTCCAGGATTTTGCTGATAGACGTCATTGCCGTCGTTGCATG 832
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 722 AAGACAATAACTACTGCTTTTCAGGATTTTGCTGATAGACGTCATTGCCGCCGTTGCTTG 781
Query 833 ATATTCGATTGTCATATGCATGAGAAGTATGAGCCCGAGTCTAGATCCAGCGAAGACAAA 892
||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 782 ATATTTGATTGTCATATGCATGAGAAGTTTGAGCCCGAGTTTAGACCCAGCGAAGACAAA 841
Query 893 TCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCAGTGAGCATTGTTACCTCAAGGTG 952
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 842 TCTGGTTTGTTTGAGAATGAAGATAGAGAACCATGCAGTGAGCATTGTTACCTCAAGGTG 901
Query 953 AGGAGTGTGACAGAAGCTGATCATGTGATGGATAATGATAACTCTATATCAAACAAGATT 1012
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
Sbjct 902 AGGAGTGTGACAGAAGCTGATCATGCGGTAGATAATGATAACTCTATATCAAACAAGAAT 961
Query 1013 GTGGTCTCAGATCCAAACAAC-ACTATGTGGACGCCTGTAGAGAAGGATCTTTACTTGAA 1071
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 962 GTGGTCTCAGATCCAAAC-ACAACTATGTGGACGCCTGTGGAGAAGGATCTTTACTTGAA 1020
Query 1072 AGGAATTGAGATATTTGGGAGAAACAGTTGTGATGTTGCATTAAACATACTTCGGGGGCT 1131
|||| || | || ||||||||||||||||||| | || |||||||||||| |||||||||
Sbjct 1021 AGGAGTTCAAATCTTTGGGAGAAACAGTTGTGCTATTACATTAAACATACATCGGGGGCT 1080
Query 1132 TAAGACGTGCCTAGAGATTTACAATTACATGCGCGAACAAGATCAATGTACTATGTCATT 1191
||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1081 TAAGACGTGTCTAGAGGTTTACAATTACATGCTTGAACAAGATCAATGTACTATGTCATT 1140
Query 1192 AGACCTTAACAAAACTACACAAAGACACAATCAGGTTACCAAAAAAGTATCTCGAAAAAG 1251
|| |||| ||||||||||| ||| | | |||||||||| ||||||||||||||||||| |
Sbjct 1141 AGTCCTTCACAAAACTACAAAAACAAAGAATCAGGTTAACAAAAAAGTATCTCGAAAAGG 1200
Query 1252 TAGTAGGTCGGTCCGCAAAAAATCGAGACTCCGAAAATATGCTCGTTATCCGCCTGCTTT 1311
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1201 TACTAGGTCGGTCCGCAAAAAATCCAGACTCCGAAAATATGCTCGTTATCCGCCTGCTTT 1260
Query 1312 AAAGAAAACAACTAGTGGAGAAGCTAAGTTTTATAAGCACTACACACCATGCACTTGCAA 1371
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1261 GAAGAAAACAACTAATGGAGAAGCTAAGTTTTATAAGCACTACTCACCATGCACTTGCAA 1320
Query 1372 GTCAAAATGTGGACAGCAATGCCCTTGTTTAACTCACGAAAATTGCTGCGAGAAATATTG 1431
||||||||||||| | |||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1321 GTCAAAATGTGGATATCAATGCCCTTGTTTAACTAATGAAAATTGCTGTGAGAAATATTG 1380
Query 1432 CGGGTGCTCAAAGGATTGCAACAATCGCTTTGGAGGATGTAATTGTGCAATTGGCCAATG 1491
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CGGGTGCCCGAAGGATTGCAACAATCGCTTTGGAGGATGTAATTGTGCAATTGGCCAATG 1440
Query 1492 CACAAATC-GACAATGTCCTTGTTTTGCTGCTAATCGTGAATGCGATCCAGATCTTTGTC 1550
|||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1441 CACAAA-CAGACAATGTCCTTGCTTTGCTGCTAATCGTGAATGTGATCCAGATCTATGTC 1499
Query 1551 GGAGTTGTCCTCTTAGCTGTGGAGATGGCACTCTTGGTGAGACACCAGTGCAAATCCAAT 1610
||||||||||||||||||||||||||||| ||||||||||| || ||| |||||| ||||
Sbjct 1500 GGAGTTGTCCTCTTAGCTGTGGAGATGGCTCTCTTGGTGAGCCATCAGAGCAAATACAAT 1559
Query 1611 GCAAGAACATGCAATTCCTCCTTCAAACCAATAAAAAGATTCTCATTGGAAAGTCTGATG 1670
||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||| |||
Sbjct 1560 GCAAGAACATGCATTTCCTCCTTAAAAAAAATAAGAAGATTCTCATTGGAAAGTCTAATG 1619
Query 1671 TTCATGGATGGGGTGCATTTACATGGGACTCTCTTAAAAAGAATGAGTATCTCGGAGAAT 1730
||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 1620 TTCATGGATGGGGTGCATTTACACCGGACTCTCTTAAAAAGAATGAGTTTCTAGGAGAAT 1679
Query 1731 ATACTGGAGAACTGATCACTCATGATGAAGCTAATGAGCGTGGGAGAATAGAAGATCGGA 1790
||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct 1680 ATACTGGAGAACTGATCACTCATGAGGAAGCAAATGAGCGTGGGAGAGTAGAAGATCGGA 1739
Query 1791 TTGGTTCTTCCTACCTCTTTACCTTGAATGATCAGCTCGAAATCGATGCTCGCCGTAAAG 1850
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1740 TTGGTTCTTCATACCTCTTTACCTTGAATGATCAGCTCGAAATCGATGCTCGCCGTTATG 1799
Query 1851 GAAACGAGTTCAAATTTCTCAATCACTCAGCAAGACCTAACTGCTACGCCAAGTTGATGA 1910
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GAAACAAGTTCAAATTTCTCAATCACTCAGCAAGACCTAACTGCTACGCCAAGTTGATGA 1859
Query 1911 TTGTGAGAGGAGATCAGAGGATTGGTCTATTTGCGGAGAGAGCAATCGAAGAAGGTGAGG 1970
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 1860 TTGTGAGAGGAGATCAGAGGATTGGTCTATTTGCAGAGAGAGCAATCGAACAAAATGAGG 1919
Query 1971 AGCTTTTCTTCGACTACTGCTATGGACCAGAACATGCGGATTGGTCGCGTGGTCGAGAAC 2030
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1920 AGCTTTTCTTCGACTACTGCTATGGACCAGAGCATGCGGATTGGTCTCGTGGTCGAGAAC 1979
Query 2031 CTAGAAAGACTGGTGCTTCTAAAAGGTCTAAGGAAGCCCGTCCAGCTCGTTAGTTTTTGA 2090
|||||||||||||||||||||||||||||||||||||||||||| || | ||| ||| ||
Sbjct 1980 CTAGAAAGACTGGTGCTTCTAAAAGGTCTAAGGAAGCCCGTCCATCTAGATAGATTTGGA 2039
Query 2091 TCTGAGGAGAAGCAGCAATTCAAGCAGTCCtttttttATGTTATGGTA-TATCAATTAAT 2149
||||||||||||||||||| ||||||||| |||||| | ||||||||| ||||||| |||
Sbjct 2040 TCTGAGGAGAAGCAGCAATACAAGCAGTCGTTTTTTAAAGTTATGGTAATATCAATAAAT 2099
Query 2150 AATGTAATGCTATTTTGTGTTACTAAACCAAAACTTAAGTTTCTGttttatttgttttag 2209
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2100 AATGTAATGCTATTTTGTGTTACTAAACCAAAACTTAAGTTTCTGTTTAATTTGTTTCAG 2159
Query 2210 ggtgttttgttt-gtat--catatgtgtcttaa-ctttcaaagttttctttttGTATTTC 2265
||| |||||||| || | |||||||||||||| || |||||||||| ||||||||||||
Sbjct 2160 GGTTTTTTGTTTTGTTTGTCATATGTGTCTTAAGCTCTCAAAGTTTTATTTTTGTATTTC 2219
Query 2266 AATTTAAAAA 2275
|||| |||||
Sbjct 2220 AATTAAAAAA 2229
Score = 440 bits (238), Expect = 2e-122
Identities = 288/311 (93%), Gaps = 8/311 (3%)
Strand=Plus/Plus
Query 1 AGGCGAGTGGTTAATGGAGAAGGAAAACCATGAGGACGATGGTGAGGGTTTGCCACCCGA 60
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 AGGCGAGTGGTTAATGGAGAAGGACAACCATGAGGACGATGGTGAGGATTTGCCACCCGA 60
Query 61 -ACTAAATCAGATAAAAGAGCAAATCGAAAAGGAGAGATTTCTGCATATCAAGAGAAA-A 118
| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 61 TA-TAAATCAGATAAAAGAGCAAATCGAAGAGGAGAGATTTCTGCATATCAAGA-AAACA 118
Query 119 TTCGAGCTGAGATACATTCCAAGTGTGGCTACTCATGCTTCACACCATCAATCGTTTGAC 178
||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 119 TTCGAGCTGAGATGCATTCCAAGTGTAGCTGCTCATGCTTCACACCATCAATCGTTTGAC 178
Query 179 TTAAACCAGCCCGCT-GCAGAGGATGATAATGGAGGAGACAACAAATCACTT-TTGTCGA 236
|||||||||||| || |||||||||||||||| ||||||||||||| ||||| || || |
Sbjct 179 TTAAACCAGCCC-CTTGCAGAGGATGATAATGAAGGAGACAACAAAACACTTCTT-TCTA 236
Query 237 GAATGCAAAACCCACTTCGTCATTTCAGTGCCTCATCTGATTATAATTCTTACGAAGATC 296
|||||||||||||||||| |||||||||||||| |||||||| | || ||||||||||||
Sbjct 237 GAATGCAAAACCCACTTCATCATTTCAGTGCCTTATCTGATTCTGATACTTACGAAGATC 296
Query 297 AAGGTTATGTT 307
|||||| ||||
Sbjct 297 AAGGTTGTGTT 307
> Ahg919137 jgi|Araly1|919137|scaffold_100418.1
Length=619
Score = 414 bits (224), Expect = 1e-114
Identities = 283/312 (91%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 1126 GGGGCTTAAGACGTGCCTAGAGATTTACAATTACATGCGCGAACAAGATCAATGTACTAT 1185
|||| ||||||||||||||||| |||||||||||||| | ||||| |||||| ||||| |
Sbjct 278 GGGGATTAAGACGTGCCTAGAGGTTTACAATTACATGTGTGAACATGATCAACGTACTGT 337
Query 1186 GTCATTAGACCTTAACAAAACTACACAAAGACACAATCAGGTTACCAAAAAAGTATCTCG 1245
||||||||||||||||||| ||| | ||| |||||| ||||||| |||||||||||||||
Sbjct 338 GTCATTAGACCTTAACAAACCTAGAGAAAAACACAAGCAGGTTAACAAAAAAGTATCTCG 397
Query 1246 AAAAAGTAGTAGGTCGGTCCGCAAAAAATCGAGACTCCGAAAATATGCTCGTTATCCGCC 1305
||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 398 AAAAAGTAGTAGGTCAGTCCGCAAAAAATCCAGACTTGGAAAATATGCTCGTTGTCCGCC 457
Query 1306 TGCTTTAAAGAAAACAACTAGTGGAGAAGCTAAGTTTTATAAGCACTACACACCATGCAC 1365
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 458 TGCTTTAAAGAAAACAACTAATGGAGAAGCTCAGTTTTATAAGCACTACACACCATGCAC 517
Query 1366 TTGCA-AGTCAAAATGTGGACAGCAATGCCCTTGTTTAACTCACGAAAATTGCTGCGAGA 1424
|||| | |||||||||||| | |||| ||||||||||||| | |||||||| |||||||
Sbjct 518 TTGCGCA-TCAAAATGTGGAGATCAATCCCCTTGTTTAACTAATGAAAATTGTTGCGAGA 576
Query 1425 AATATTGCGGGT 1436
||||||||||||
Sbjct 577 AATATTGCGGGT 588
Score = 316 bits (171), Expect = 3e-85
Identities = 228/254 (90%), Gaps = 9/254 (4%)
Strand=Plus/Plus
Query 706 GGAAAGATACAATGAACTCAAGCTTAAGAATGATGGAACTGCTGGTGAGGCTTCTGATTT 765
|||||||| |||||| || |||||||||||||||||||| | ||||||||||||||||||
Sbjct 26 GGAAAGATTCAATGAGCTTAAGCTTAAGAATGATGGAACAGTTGGTGAGGCTTCTGATTT 85
Query 766 GACATCCAAGACAATAACTACTGCTTTCCAGGATTTTGCTGATAGACGTCATTGCCGTCG 825
|||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 86 CACATCCAAGATAATAACTACTGCTTTTCAGAATTTTGCTGATAGACGTCATTGCCGTCG 145
Query 826 TTGCATGATATTCGATTGTCATATGCATGAGAAGTATGAGCC--CGAGT-CTA-GA-TC- 879
|||| ||||||| ||||||||||||||||||||||||||||| | | | || | |
Sbjct 146 TTGCTTGATATTTGATTGTCATATGCATGAGAAGTATGAGCCAACCATTGCTTTGGCTTT 205
Query 880 -CAG--CGAAGACAAATCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCAGTGAGCA 936
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 206 TCAGAGCGAAGACAAATCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCACTGAGCA 265
Query 937 TTGTTACCTCAAGG 950
||||||||||||||
Sbjct 266 TTGTTACCTCAAGG 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86274404925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5