BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02610.1

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg909919 jgi|Araly1|909919|Al_scaffold_0001_173                    1077    0.0  


> Ahg909919 jgi|Araly1|909919|Al_scaffold_0001_173
Length=663

 Score = 1077 bits (583),  Expect = 0.0
 Identities = 639/666 (96%), Gaps = 3/666 (0%)
 Strand=Plus/Plus

Query  141  ATGGGAGATGTAGTTTTGTTCATAGATGAAACATATTTGAAATCGAGTTTTAATCGCTGT  200
            |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1    ATGGGAGAAGTAGTATTGTTCATAGATGAAACATATTGGAAATCGAGTTTTAATCGCTGT  60

Query  201  AGAATCTGTCACGAAGAAGAAGCTGAGAGCTACTTTGAAGCTCCTTGTTCTTGTTCAGGA  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGAATCTGTCACGAAGAAGAAGCTGAGAGCTACTTTGAAGCTCCTTGTTCTTGTTCAGGA  120

Query  261  ACCATCAAGTTCGCTCACAGAGATTGCATACAACGATGGTGTGATGAGAAAGGAAACACA  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACCATCAAGTTCGCTCACAGAGATTGCATACAACGATGGTGTGATGAGAAAGGAAACACA  180

Query  321  ATTTGTGAAATTTGTCTCCAGGAGTATAAACCTGGATACACCACAACTTCAAAACCATCT  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTTGTGAAATTTGTCTCCAGGAGTATAAACCTGGATACACCACAACTTCAAAACCATCT  240

Query  381  CGATTTATTGAAACAGCAGTCACAATCAGAGATAATTTACACATAATGagaagagaaaat  440
            ||| | |||||| ||| |||||||||||||||||||||||||| |  ||| |||||||||
Sbjct  241  CGACTGATTGAAGCAGGAGTCACAATCAGAGATAATTTACACACAGCGAGGAGAGAAAAT  300

Query  441  ggaagaagaagaagaaatagaagattagtgaatagagaagaatcagattttcaagaatGC  500
            ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGA-G--GAAGAAGAAATAGAAGATTAGTGAATAGAGAAGAATCAGATTTTCAAGAATGC  357

Query  501  AACTCTGGTGTTGATAGAGGCGCCTCTTGTTGTAGATACTTGGCTCTCATTTTTTCGGTT  560
            |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct  358  AACTCTGGTGTTCATAGAGGCGCCTCTTGTTGTAGATTCTTGGCTCTCATTTTTTCGGTG  417

Query  561  ATTTTGTTGATAAAGCATGCATTTGATGCGGTTTATGGAACTGAAGAGTATCCCTATACA  620
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  GTTTTGTTGATAAAGCATGCATTTGATGCGGTTTATGGAACTGAAGAGTATCCCTATACA  477

Query  621  ATATTCACGGTCTTAACATTGAAGGCTATAGGCATACTATTACCAATGCTCGTTATCATT  680
            |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  478  ATATTCACTGTATTAACATTGAAGGCCATAGGCATACTATTGCCAATGCTCGTTATCATT  537

Query  681  CGAACCATCACAGCTATTCAAAGGAGTCTCCGATATCAAATTCTCGAATCAGAAGAAGAT  740
            ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  538  CGAACCATCGCAGCTATTCAGAGGAGTCTCCGATATCAAATTCTCGAATCTGAAGAAGAT  597

Query  741  ACATTGAGCTCTGAAGAAGAAGATCATGGTTTGGAGGAGGAAGAGCAACAACAACATATA  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  598  ACATTGAGCTCTGAAGAAGAAGATCATGGTTTGGAGGAGGAAGAGCAACAACAACATTTG  657

Query  801  GCTTGA  806
            ||||||
Sbjct  658  GCTTGA  663



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34768100304


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5