BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02630.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470221 jgi|Araly1|470221|fgenesh2_kg.1__175__AT1G02630.1 1941 0.0
> Ahg470221 jgi|Araly1|470221|fgenesh2_kg.1__175__AT1G02630.1
Length=1320
Score = 1941 bits (1051), Expect = 0.0
Identities = 1159/1211 (96%), Gaps = 7/1211 (1%)
Strand=Plus/Plus
Query 4 CAAAGTAGTGAGATCAAGAGAGA-AAAAAGGGGAGTTACAATGGTTGATGAGAAAGTGAT 62
||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct 2 CAAAGTAGTGAGATCAAGAGAGAGAAAAAAAGGAGCTACAATGGTTGATGAGAAAGTAAG 61
Query 63 TGTTGATGAAGTTGAGACAAGAGACGCTTATAGAGTTGCGTACGTGATCCATTTCTTGTT 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TGTTGATGAAGTTGAGACAAGAGACGCTTATAGAGTTGCGTACGTGATCCATTTCTTGTT 121
Query 123 GGGTGCTGGTAGTTTAATACCATGGAACGCTTTGATCACTGCCGTTGATTACTTTGGCTA 182
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 122 GGGGGCTGGTAGTTTAATACCATGGAACGCTTTGATCACAGCCGTTGATTACTTTGGCTA 181
Query 183 CTTGTACCCGGACAAGCATGTAGAGAAGACTTTCACTGTGGCTTACATGAGCTGTTCGGT 242
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 182 CTTGTACCCGGACAAGCATGTAGAGAAGACTTTCACCGTGGCTTACATGAGCTGCTCGGT 241
Query 243 TCTTGTTTTGGTTTTGATGATGACTTGGAACACAAGGATGAGCTACAGAGTGAGGATGAA 302
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 242 CCTTGTTTTGGTTTTGATGATGACTTGGAACACAAGGCTGAGCTATAGAGTGAGGATGAA 301
Query 303 CTTGGGGTTTTCCATGTTCATCATCGCCATGATGATTTCTCCCCTT-ATAGATTGGGTCT 361
|||||||||||||||||||||||| ||||||||||||||| || || ||||||||||| |
Sbjct 302 CTTGGGGTTTTCCATGTTCATCATTGCCATGATGATTTCT-CCTTTCATAGATTGGGTTT 360
Query 362 GGAAAGGTGAAAAGGGTGAGAATGTTTCTTACATGTTGATGGTTGGATCAGTCGT-ACTC 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 361 GGAAAGGTGAAAAGGGTGAGAATGTTTCTTACAAATTGATGGTTGGATCAGTCGTGA-TC 419
Query 421 TGTGGTTTAGCTGATGGAGTGGTTGGAGGAAGTTTGATTGGTTCAGCCGGAAAGCTTCCT 480
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 420 TGTGGTTTAGCTGATGGATTGGTCGGAGGAAGTTTGATTGGTTCAGCTGGAAAGCTTCCT 479
Query 481 AGACAGTACATGCAAGCAATTTTTGCCGGCACTGCCTCTTCAGGTATTATCATCTCCCTC 540
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 AGACAGTACATGCAAGCCATTTTTGCCGGCACTGCCTCTTCAGGTATTATTATCTCCCTC 539
Query 541 CTTAGGATTGCGACTAAAGCTTCGCTGCCACAAACACCGCAGGGGATGCGAACCAGTGCT 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTTAGGATTGCAACTAAAGCTTCGCTGCCACAAACACCGCAGGGGATGCGAACCAGTGCT 599
Query 601 CATTCCTATTTCATAGTCAGCTCTACCATCCTCCTATGTTGCTTCATTTCTTGTAACGTG 660
||||||||||| ||||| || |||||||||||| ||||||||||||||| ||||||||||
Sbjct 600 CATTCCTATTTTATAGTTAGTTCTACCATCCTCGTATGTTGCTTCATTTGTTGTAACGTG 659
Query 661 CTACACAAGCTACCAGTAATGCAACAACACCTCAAGTTTCATCAACCTTTGCATTCGACT 720
|| |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 660 CTCCACAAGTTACCAGTAATGCAACAACACCTCAAATTTCATCAACCTTTGCACTCGACT 719
Query 721 CTGACAATATGGATGGTTGGGAGGAAAATCAAGTGGCCAGCTTCGGGTATGCTAATAAT- 779
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 CTGACAATATGGATGGTTGGGAGGAAGATCAAGTGGCCAGCTTCGGGTATGCTAATAATA 779
Query 780 CTACTCTGTTACCTTATCGATATTTCCAGGATTTATAGCTGAGAATTTGAAGTCCCAACT 839
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 C-ACACCGTTACCTTATCGATATTTCCAGGATTTATAGCTGAGAATTTGAAGTCCCAACT 838
Query 840 TCTCCAAAGTTGGTATCCCATTTTGCTCATCACTGTGTACAACATATCGGATTTCGTAGG 899
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TCTCCAAAGTTGGTATCCTATTTTGCTCATCACTGTGTACAACATCTCGGATTTCGTAGG 898
Query 900 CAAGTCACTCACCGCACTCTATCTATGGCAAAGTATAAAATCGGCTACATGGGCTTGTAT 959
|||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 899 CAAGTCACTCACTGCACTCTATGTATGGCAGAGTATAAAATCGGCTACATGGGCTTGTAT 958
Query 960 CGTTAGGCTTCTCTTTTATCCTCTTTTCTCTGCATGTCTACGTGGACCAAAATGGTTAAG 1019
||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 959 CGTGAGGCTTCTGTTTTATCCTCTTTTCTCTGCGTGTCTACGTGGACCGCAATGGTTAAG 1018
Query 1020 AACAGAAGTGCCAGTGGTTGTCTTGACGTTCATGCTAGGTCTTACCAACGGCTACCTCAC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AACAGAAGTGCCAGTGGTTGTCTTGACGTTCATGCTAGGTCTTACCAACGGCTACCTCAC 1078
Query 1080 TAGCGTGCTCATGATCATGGCTCCCAAAACGGTTCATGCATCAGAAGCAGAACTTGCAGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TAGCGTGCTCATGATCATGGCTCCCAAAACGGTTCATGCATCAGAAGCAGAACTTGCAGC 1138
Query 1140 CATCTTCATGGTTGTTTTTCTAGGACTAGGTCTTGTTTGTGGCTCTGTTATTGGTTGGCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CATCTTCATGGTTGTTTTTCTAGGACTAGGTCTTGTTTGTGGCTCTGTTATTGGTTGGCT 1198
Query 1200 CTGGCTCATCT 1210
|||||||||||
Sbjct 1199 CTGGCTCATCT 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5